Rroxscaffold_2G00116590

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001946
Physical Location & Seq
Reverse (-)
43846709 .. 43850785
4077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00116590.1

Sequence Viewer

Length: 240 bp
ATGCAGACAGAGGAGAAACCTGGTTGGTGTAATGATCCGCATTTGCCGCCCTGTGCAGCGTTTGTAGAAATTATGGCGCCTGTGTTTTCTCGGGATGCATGGTGTTGTGTTTGGCATATGATTCAGAATGACCTGGTCCATGGTTGGGGTCTGGATTTTGCTCTTAGACGCTGTGTAGAGCCTGCACATGAGATAGCACAGTGGATTGTCCATCAAGGTGTTCCTTCACTTCTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

79

Amino Acids

9.05

Weight (kDa)

5.29

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 3 - 78 3e-33 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 2 cut(s) 38, 47
AclWI GGATC 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 145
AjnI CCWGG 2 cut(s) 19, 132
AlwI GGATC 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 219
BciT130I CCWGG 2 cut(s) 21, 134
BfaI CTAG 1 cut(s) 238
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 2 cut(s) 47, 57
BlsI GCNGC 2 cut(s) 48, 58
Bme1390I CCNGG 2 cut(s) 21, 134
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 2 cut(s) 21, 134
BmsI GCATC 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseBI CCWGG 2 cut(s) 21, 134
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 68
BsgI GTGCAG 2 cut(s) 75, 168
BshNI GGYRCC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 2 cut(s) 38, 47
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 21, 134
Bst4CI ACNGT 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 2 cut(s) 21, 134
BstSCI CCNGG 2 cut(s) 19, 132
BstV1I GCAGC 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 177
CsiI ACCWGGT 2 cut(s) 19, 132
CviAII CATG 3 cut(s) 99, 140, 188
CviJI RGCY 1 cut(s) 181
CviKI_1 RGCY 1 cut(s) 181
DdeI CTNAG 1 cut(s) 164
DinI GGCGCC 1 cut(s) 78
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 19, 132
EcoT14I CCWWGG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 100
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 3 cut(s) 102, 143, 191
FaiI YATR 6 cut(s) 74, 100, 117, 119, 141, 189
FatI CATG 3 cut(s) 98, 139, 187
FauNDI CATATG 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 47, 57
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 47, 57
FspBI CTAG 1 cut(s) 238
GlaI GCGC 1 cut(s) 78
GluI GCNGC 2 cut(s) 47, 57
HaeII RGCGCY 1 cut(s) 80
HgaI GACGC 1 cut(s) 177
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 3 cut(s) 102, 143, 191
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HinfI GANTC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 92, 152
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 4 cut(s) 4, 56, 98, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 164
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 3 cut(s) 102, 143, 191
HspAI GCGC 1 cut(s) 77
KasI GGCGCC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 8 cut(s) 6, 33, 64, 93, 119, 137, 146, 195
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 1 cut(s) 85
MabI ACCWGGT 2 cut(s) 19, 132
MaeI CTAG 1 cut(s) 238
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MluCI AATT 1 cut(s) 69
Mly113I GGCGCC 1 cut(s) 77
MnlI CCTC 1 cut(s) 4
Mph1103I ATGCAT 1 cut(s) 100
MslI CAYNNNNRTG 1 cut(s) 216
MspR9I CCNGG 2 cut(s) 21, 134
MvaI CCWGG 2 cut(s) 21, 134
MwoI GCNNNNNNNGC 1 cut(s) 46
NarI GGCGCC 1 cut(s) 77
NcoI CCATGG 1 cut(s) 139
NdeI CATATG 1 cut(s) 117
NdeII GATC 1 cut(s) 34
NlaIII CATG 3 cut(s) 102, 143, 191
NlaIV GGNNCC 1 cut(s) 78
NsiI ATGCAT 1 cut(s) 100
PfeI GAWTC 1 cut(s) 121
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 48, 58
PluTI GGCGCC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 19, 132
PspGI CCWGG 2 cut(s) 19, 132
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 136
PsyI GACNNNGTC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 216
SatI GCNGC 2 cut(s) 47, 57
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 21, 134
SetI ASST 3 cut(s) 22, 135, 220
SexAI ACCWGGT 2 cut(s) 19, 132
SfaNI GCATC 1 cut(s) 85
SfoI GGCGCC 1 cut(s) 78
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 1 cut(s) 69
SsiI CCGC 2 cut(s) 38, 47
SspDI GGCGCC 1 cut(s) 76
SspMI CTAG 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 19, 132
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 201
TasI AATT 1 cut(s) 69
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 1 cut(s) 121
TscAI CASTG 1 cut(s) 206
TseI GCWGC 1 cut(s) 56
TspRI CASTG 1 cut(s) 206
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 136
XspI CTAG 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.