Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001946

Physical Location & Seq

Genomic Coordinates Reverse (-)

26253102 .. 26256998

Gene Structure 3897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G294100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGTGTCTCCGATACGCATTGGAAATATTAGGAACCCCAATGAGAAAATGCGGCTTGTTGTCACAGTCTTCGTTGGAATTGTACTAGGCTTCTTTTTAGGAGTTTCATTTCCAACACTCTATTTGACTAAGATGAATCTTCCATCCAGCCTTTTTCCTTCCATTGATCTTTCGTACATAGAGGACAAGTACTCCGGGTTTTCAACCCAAGCACTATTGAATGCCTGGTCTTCTTTGAAGGGCAACACAGACAACTCCGCAAGATATGTATCTAATGAGGAGGCGAAGATTTGGGTTCCAACAAATCCTCGAGGTGCTGAAAGCCTACCCCCAGGCATCATTGCATCTGAGTCAGATTTCTATCTTCGCCGACTATGGGGTCTGCCCAGTGAGGACTTAATCATCAAGCCGAAGTATCTTGTAACCTTTACCGTAGGCTATGCTCAGAAAAATAATGTCGATGCAGCAGTGAAAAAGTTCTCAAAGAATTTCACCATTCTGTTGTTTCACTACGATGGGCGGACAAGTGAATGGGATGAATTTGAGTGGTCAAAGCGGGCTATCCATGTGAGCATTCAGAAGCAAACTAAATGGTGGTATGCCAAGCGGTTTTTGCATCCTGATATTGTGGCACCCTACGACTACATATTTGTTTGGGATGAGGATCTTGGTGTGGAGCACTTCAATGCGGAGGAATACATAAAATTGGTAAGGAAATATGGTTTGGAAATATCTCAGCCTGGTTTAGAACCAAATAATGGGCTCACATGGCAAATGACGAAGCGGAGAGGTGATAGTGAAGTTCACATGCTGACAGAGGAGAAACCTGGTTGGTGTAATGATCCGCATTTGCCACCATGTGCAGCGTTTGTTGAAATTATGGCACCTGTGTTTTCTCGGGATGCATGGCGTTGTGTTTGGCACATGATTCAGAATGACCTGGTCCATGGCTGGGGTCTGGATTTTGCTCTTAGACAATGCGTAGAGCCTGCACATAAGAAAATAGGAGTCGTGGATGCACAGTGGATTGTCCATCAAGGTGTTCCATCACTCGGGAACCAAGGGCAAGCAGAGCGTGGAAGAGCACCATGGGAAGGGGTGAGGGAGAGGTGCAGGAGAGAATGGACAATGTTTCAAGCACGAATGACCAGAGCAGAGAAATCATATTTTGAGGCAATGGGAGTTGATCCTCCAAATTCAACAGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

404

Amino Acids

46.35

Weight (kDa)

7.17

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27470 AT3G27470 AT3G27470 AT3G27470 AT3G27470
fragaria_vesca	FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770
malus_domestica	MD09G1022800.v1.1 MD17G1022000.v1.1
prunus_persica	Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1
pyrus_communis	pycom111g01910 pycom17g01910
rosa_chinensis	RchiOBHm_Chr2g0127631 RchiOBHm_Chr2g0173331
rosa_laevigata	RLG00000018948 RLG00000022179
rosa_multiflora	Rmu_co8312885.1_g000001 Rmu_sc0010961.1_g000004 Rmu_sc0033776.1_g000002 Rmu_ssc0000200.1_g000010
rosa_roxburghii	Rroxscaffold_2G00079050 Rroxscaffold_2G00116590 Rroxscaffold_2G00116600
rosa_rugosa	Rorug02G0272400 Rorug02G0567400 Rorug02G0567500
rosa_samantha	Rh2AG324300 Rh2AG647700 Rh2BG658200 Rh2CG311800 Rh2CG623700 Rh2DG351800 Rh2DG672000
rosa_wichuraiana	Rw2G026330 Rw2G053170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	378
AbsI	CCTCGAGG	1 cut(s)	309
AccB1I	GGYRCC	2 cut(s)	631, 883
AccB7I	CCANNNNNTGG	1 cut(s)	758
AciI	CCGC	8 cut(s)	52, 258, 520, 556, 607, 689, 784, 845
AclWI	GGATC	3 cut(s)	672, 836, 1181
AcsI	RAATTY	3 cut(s)	487, 539, 1195
AdeI	CACNNNGTG	1 cut(s)	860
AfaI	GTAC	3 cut(s)	84, 176, 191
AfiI	CCNNNNNNNGG	5 cut(s)	376, 758, 952, 1052, 1094
AgsI	TTSAA	7 cut(s)	204, 220, 238, 685, 875, 1136, 1200
AjnI	CCWGG	5 cut(s)	224, 331, 739, 826, 939
AjuI	GAANNNNNNNTTGG	2 cut(s)	707, 739
AluBI	AGCT	1 cut(s)	1205
AluI	AGCT	1 cut(s)	1205
Alw21I	GWGCWC	2 cut(s)	681, 1087
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	3 cut(s)	672, 836, 1181
Ama87I	CYCGRG	3 cut(s)	309, 897, 1052
ApeKI	GCWGC	2 cut(s)	464, 863
ApoI	RAATTY	3 cut(s)	487, 539, 1195
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
Asp700I	GAANNNNTTC	1 cut(s)	476
AspS9I	GGNCC	1 cut(s)	943
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	3 cut(s)	484, 803, 1111
AvaI	CYCGRG	3 cut(s)	309, 897, 1052
AvaII	GGWCC	1 cut(s)	943
BanI	GGYRCC	2 cut(s)	631, 883
BanII	GRGCYC	1 cut(s)	765
BbsI	GAAGAC	2 cut(s)	61, 222
Bbv12I	GWGCWC	2 cut(s)	681, 1087
BbvI	GCAGC	2 cut(s)	476, 875
BccI	CCATC	4 cut(s)	151, 509, 1041, 1054
BciT130I	CCWGG	5 cut(s)	226, 333, 741, 828, 941
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	3 cut(s)	53, 465, 864
BlsI	GCNGC	3 cut(s)	54, 466, 865
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	6 cut(s)	196, 226, 333, 741, 828, 941
Bme18I	GGWCC	1 cut(s)	943
BmeT110I	CYCGRG	3 cut(s)	309, 897, 1052
BmgT120I	GGNCC	1 cut(s)	943
BmiI	GGNNCC	5 cut(s)	35, 297, 633, 885, 1058
BmrFI	CCNGG	6 cut(s)	196, 226, 333, 741, 828, 941
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	6 cut(s)	345, 353, 451, 625, 892, 1006
BmuI	ACTGGG	1 cut(s)	381
BpiI	GAAGAC	2 cut(s)	61, 222
BpuMI	CCSGG	1 cut(s)	196
BsaBI	GATNNNNATC	3 cut(s)	268, 360, 663
BsaJI	CCNNGG	4 cut(s)	331, 946, 1060, 1088
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	5 cut(s)	376, 758, 952, 1052, 1094
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	2 cut(s)	339, 1182
Bse8I	GATNNNNATC	3 cut(s)	268, 360, 663
BseBI	CCWGG	5 cut(s)	226, 333, 741, 828, 941
BseDI	CCNNGG	4 cut(s)	331, 946, 1060, 1088
BseGI	GGATG	6 cut(s)	143, 541, 616, 664, 907, 1021
BseJI	GATNNNNATC	3 cut(s)	268, 360, 663
BseLI	CCNNNNNNNGG	5 cut(s)	376, 758, 952, 1052, 1094
BseMI	GCAATG	2 cut(s)	339, 1182
BseMII	CTCAG	3 cut(s)	339, 458, 749
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	2 cut(s)	293, 833
BseXI	GCAGC	2 cut(s)	476, 875
BseYI	CCCAGC	1 cut(s)	951
BsgI	GTGCAG	3 cut(s)	882, 975, 1132
BshNI	GGYRCC	2 cut(s)	631, 883
BsiHKAI	GWGCWC	2 cut(s)	681, 1087
BsiHKCI	CYCGRG	3 cut(s)	309, 897, 1052
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	5 cut(s)	376, 758, 952, 1052, 1094
BsmAI	GTCTC	1 cut(s)	12
BsmI	GAATGC	2 cut(s)	226, 573
BsoBI	CYCGRG	3 cut(s)	309, 897, 1052
Bsp1286I	GDGCHC	3 cut(s)	681, 765, 1087
Bsp143I	GATC	4 cut(s)	166, 664, 841, 1186
Bsp19I	CCATGG	2 cut(s)	946, 1088
BspACI	CCGC	8 cut(s)	52, 258, 520, 556, 607, 689, 784, 845
BspCNI	CTCAG	3 cut(s)	340, 457, 748
BspLI	GGNNCC	5 cut(s)	35, 297, 633, 885, 1058
BspPI	GGATC	3 cut(s)	672, 836, 1181
BspQI	GCTCTTC	1 cut(s)	1075
BspT107I	GGYRCC	2 cut(s)	631, 883
BsrDI	GCAATG	2 cut(s)	339, 1182
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	4 cut(s)	331, 946, 1060, 1088
BssMI	GATC	4 cut(s)	166, 664, 841, 1186
BssT1I	CCWWGG	3 cut(s)	946, 1060, 1088
Bst2UI	CCWGG	5 cut(s)	226, 333, 741, 828, 941
Bst4CI	ACNGT	3 cut(s)	67, 433, 1023
Bst6I	CTCTTC	1 cut(s)	1075
BstC8I	GCNNGC	3 cut(s)	558, 990, 1068
BstDEI	CTNAG	5 cut(s)	129, 348, 444, 735, 971
BstDSI	CCRYGG	2 cut(s)	946, 1088
BstF5I	GGATG	6 cut(s)	143, 541, 616, 664, 907, 1021
BstKTI	GATC	4 cut(s)	169, 667, 844, 1189
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	166, 664, 841, 1186
BstMWI	GCNNNNNNNGC	3 cut(s)	613, 769, 1072
BstNI	CCWGG	5 cut(s)	226, 333, 741, 828, 941
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	6 cut(s)	194, 224, 331, 739, 826, 939
BstV1I	GCAGC	2 cut(s)	476, 875
BstV2I	GAAGAC	2 cut(s)	61, 222
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BtgI	CCRYGG	2 cut(s)	946, 1088
BtsCI	GGATG	6 cut(s)	143, 541, 616, 664, 907, 1021
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	3 cut(s)	394, 474, 1028
Cac8I	GCNNGC	3 cut(s)	558, 990, 1068
Cfr13I	GGNCC	1 cut(s)	943
CsiI	ACCWGGT	2 cut(s)	826, 939
Csp6I	GTAC	3 cut(s)	83, 175, 190
CviAII	CATG	8 cut(s)	566, 768, 808, 858, 906, 925, 947, 1089
CviQI	GTAC	3 cut(s)	83, 175, 190
DdeI	CTNAG	5 cut(s)	129, 348, 444, 735, 971
DpnI	GATC	4 cut(s)	168, 666, 843, 1188
DpnII	GATC	4 cut(s)	166, 664, 841, 1186
DraIII	CACNNNGTG	1 cut(s)	860
DrdI	GACNNNNNNGTC	1 cut(s)	378
DseDI	GACNNNNNNGTC	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	1075
EarI	CTCTTC	1 cut(s)	1075
EciI	GGCGGA	1 cut(s)	535
Eco130I	CCWWGG	3 cut(s)	946, 1060, 1088
Eco24I	GRGCYC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	943
Eco88I	CYCGRG	3 cut(s)	309, 897, 1052
EcoRII	CCWGG	5 cut(s)	224, 331, 739, 826, 939
EcoT14I	CCWWGG	3 cut(s)	946, 1060, 1088
EcoT22I	ATGCAT	1 cut(s)	907
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	3 cut(s)	946, 1060, 1088
FaeI	CATG	8 cut(s)	569, 771, 811, 861, 909, 928, 950, 1092
FatI	CATG	8 cut(s)	565, 767, 807, 857, 905, 924, 946, 1088
FauI	CCCGC	1 cut(s)	549
Fnu4HI	GCNGC	3 cut(s)	53, 465, 864
FokI	GGATG	6 cut(s)	130, 548, 603, 671, 914, 1028
FriOI	GRGCYC	1 cut(s)	765
Fsp4HI	GCNGC	3 cut(s)	53, 465, 864
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	3 cut(s)	53, 465, 864
GsaI	CCCAGC	1 cut(s)	955
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	8 cut(s)	569, 771, 811, 861, 909, 928, 950, 1092
HinfI	GANTC	4 cut(s)	136, 350, 928, 1008
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	3 cut(s)	484, 803, 1111
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	6 cut(s)	12, 349, 355, 447, 579, 933
Hpy188III	TCNNGA	4 cut(s)	620, 899, 959, 1054
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	3 cut(s)	168, 232, 1088
HpyCH4III	ACNGT	3 cut(s)	67, 433, 1023
HpyCH4V	TGCA	8 cut(s)	344, 464, 616, 863, 905, 992, 1019, 1113
HpyF10VI	GCNNNNNNNGC	3 cut(s)	613, 769, 1072
HpyF3I	CTNAG	5 cut(s)	129, 348, 444, 735, 971
Hsp92II	CATG	8 cut(s)	569, 771, 811, 861, 909, 928, 950, 1092
Kzo9I	GATC	4 cut(s)	166, 664, 841, 1186
LguI	GCTCTTC	1 cut(s)	1075
LmnI	GCTCC	1 cut(s)	676
Lsp1109I	GCAGC	2 cut(s)	476, 875
LweI	GCATC	6 cut(s)	345, 353, 451, 625, 892, 1006
MabI	ACCWGGT	2 cut(s)	826, 939
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	61, 421
MalI	GATC	4 cut(s)	168, 666, 843, 1188
MboI	GATC	4 cut(s)	166, 664, 841, 1186
MboII	GAAGA	6 cut(s)	61, 131, 222, 298, 356, 1092
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	3 cut(s)	681, 765, 1087
MluCI	AATT	6 cut(s)	78, 487, 539, 704, 876, 1195
MlyI	GAGTC	2 cut(s)	359, 1017
MmeI	TCCRAC	3 cut(s)	55, 137, 323
Mph1103I	ATGCAT	1 cut(s)	907
MroXI	GAANNNNTTC	1 cut(s)	476
MseI	TTAA	1 cut(s)	398
MslI	CAYNNNNRTG	3 cut(s)	513, 684, 1038
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	6 cut(s)	196, 226, 333, 741, 828, 941
Mva1269I	GAATGC	2 cut(s)	226, 573
MvaI	CCWGG	5 cut(s)	226, 333, 741, 828, 941
MwoI	GCNNNNNNNGC	3 cut(s)	613, 769, 1072
NciI	CCSGG	1 cut(s)	196
NcoI	CCATGG	2 cut(s)	946, 1088
NdeII	GATC	4 cut(s)	166, 664, 841, 1186
NlaIII	CATG	8 cut(s)	569, 771, 811, 861, 909, 928, 950, 1092
NlaIV	GGNNCC	5 cut(s)	35, 297, 633, 885, 1058
NmuCI	GTSAC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	907
NspI	RCATGY	1 cut(s)	811
PaeR7I	CTCGAG	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	1075
PctI	GAATGC	2 cut(s)	226, 573
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	136, 928
PflFI	GACNNNGTC	1 cut(s)	941
PflMI	CCANNNNNTGG	1 cut(s)	758
PkrI	GCNGC	3 cut(s)	54, 466, 865
PleI	GAGTC	2 cut(s)	358, 1016
PpsI	GAGTC	2 cut(s)	358, 1016
Psp6I	CCWGG	5 cut(s)	224, 331, 739, 826, 939
PspFI	CCCAGC	1 cut(s)	951
PspGI	CCWGG	5 cut(s)	224, 331, 739, 826, 939
PspN4I	GGNNCC	5 cut(s)	35, 297, 633, 885, 1058
PspPI	GGNCC	1 cut(s)	943
PspXI	VCTCGAGB	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	664
PsyI	GACNNNGTC	1 cut(s)	941
RsaI	GTAC	3 cut(s)	84, 176, 191
RsaNI	GTAC	3 cut(s)	83, 175, 190
RseI	CAYNNNNRTG	3 cut(s)	513, 684, 1038
SapI	GCTCTTC	1 cut(s)	1075
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	3 cut(s)	53, 465, 864
Sau3AI	GATC	4 cut(s)	166, 664, 841, 1186
Sau96I	GGNCC	1 cut(s)	943
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	2 cut(s)	359, 1017
ScrFI	CCNGG	6 cut(s)	196, 226, 333, 741, 828, 941
SduI	GDGCHC	3 cut(s)	681, 765, 1087
SetI	ASST	9 cut(s)	316, 428, 793, 829, 889, 942, 1042, 1112, 1207
SexAI	ACCWGGT	2 cut(s)	826, 939
SfaNI	GCATC	6 cut(s)	345, 353, 451, 625, 892, 1006
Sfr274I	CTCGAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	943
SlaI	CTCGAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	3 cut(s)	513, 684, 1038
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	6 cut(s)	78, 487, 539, 704, 876, 1195
SsiI	CCGC	8 cut(s)	52, 258, 520, 556, 607, 689, 784, 845
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	6 cut(s)	194, 224, 331, 739, 826, 939
StyI	CCWWGG	3 cut(s)	946, 1060, 1088
TaaI	ACNGT	3 cut(s)	67, 433, 1023
TaqI	TCGA	2 cut(s)	310, 459
TasI	AATT	6 cut(s)	78, 487, 539, 704, 876, 1195
TatI	WGTACW	2 cut(s)	82, 189
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	136, 928
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	3 cut(s)	394, 474, 1028
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	464, 863
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	96, 149, 552
TspRI	CASTG	3 cut(s)	394, 474, 1028
Tth111I	GACNNNGTC	1 cut(s)	941
Van91I	CCANNNNNTGG	1 cut(s)	758
VpaK11BI	GGWCC	1 cut(s)	943
XapI	RAATTY	3 cut(s)	487, 539, 1195
XceI	RCATGY	1 cut(s)	811
XhoI	CTCGAG	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	1 cut(s)	86
ZrmI	AGTACT	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.