FvH4_6g51770

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001946
Physical Location & Seq
Forward (+)
38315812 .. 38320039
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51770.t6

Sequence Viewer

Length: 1215 bp
ATGGGGAGTCCTACACGATTGGGGAATATAAGAAAACCCAAAGAGAAAATGAAGTTTGTGGCAACGGCTCTTGTGTCGATTGTATTTGGCTTCTTTATAGGAGTGTCGTTTCCGACGATTTCGTTGACTAAGATGAATCTCCCATCCAGCCTTTTTCCTTCAATTGATCTCTCATACATAGAGGAGAAGTACTCGGGGTTCTCAACCCAAGCACTGGTCGATGCCTGGTCTTCTTTGAAGGAGAACAAACATGCCTCTGTAAAATACATCCCTAATGATGCAAAGATCTGGGTTCCAACAAATCCTCCAGGGGCAGAAAGACTACCCCCTGGCATTGTAGAATCTGAGTCAGATTTTTATCTTCGTCGATTGTGGGGTCTGCCCAGTGAGGACTTAACCATCAAGCCAAAGTATCTTGTTACCTTTACTGTAGGGTATGCTCAGAAAAAGAATATAAATGCAGCTGTTAAAAAGTTCTCAGAGAACTTCACAATTGTTTTATTTCACTATGATGGTCGAACAAGTGAATGGGACGAGTTTGAGTGGTCAAAGCGGGCTATCCATGTGAGCATTCAGAAGCAAACTAAATGGTGGTACGCCAAGCGTTTTTTGCATCCTGACATTGTGGCATCATATGAATACATATTTATTTGGGATGAAGATCTCGGTGTGGAGCACTTCAACGCAGAGGAATACATAAAATTAGTAAGGAAACATGGGTTGGAAATATCACAGCCCGGTTTAGAACCAAATAATGGGCTAACATGGCAGATGACAAAGCGGAGAGGTGATAGTCAAGTTCACATGCAGACAGAGGAGAAACCTGGTTGGTGTAACGACCCGCATTTGCCACCCTGTGCAGCGTTTGTAGAAATTATGGCCCCTGTGTTTTCTCGGGATGCATGGCGTTGTGTTTGGCATATGATTCAGAATGATCTGGTCCATGGTTGGGGTCTGGATTTTGCGCTTAGACGCTGTGTAGAGCCTGCACATGAGAAAATAGGAGTCGTCGATGCACAGTGGATTGTCCATCAAAGTGTTCCTTCACTTGGGAACCAGGGGCAAGCAGAGAGTGGGAGAGCGCCATGGGAAGGGGTGAGGGAGAGGTGCAGAAGAGAATGGACTATGTTTCAAGCACGAATGGCTGGTGCAGAGAAAGCATATTTTGAGGAAATGGGAATTGATACCCCAAATTCAAAGCACGTTAGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

405

Amino Acids

46.45

Weight (kDa)

7.7

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 96 - 324 3.6e-121 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 214, 755
AciI CCGC 3 cut(s) 553, 781, 842
AcsI RAATTY 1 cut(s) 1192
AdeI CACNNNGTG 1 cut(s) 857
AfaI GTAC 2 cut(s) 191, 596
AfiI CCNNNNNNNGG 5 cut(s) 214, 755, 949, 1049, 1091
AgsI TTSAA 5 cut(s) 162, 238, 682, 1133, 1197
AjnI CCWGG 5 cut(s) 224, 307, 328, 823, 1056
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AluBI AGCT 1 cut(s) 464
AluI AGCT 1 cut(s) 464
Alw21I GWGCWC 1 cut(s) 678
Ama87I CYCGRG 2 cut(s) 193, 894
AoxI GGCC 2 cut(s) 879, 1209
ApeKI GCWGC 2 cut(s) 461, 860
ApoI RAATTY 1 cut(s) 1192
AspLEI GCGC 2 cut(s) 967, 1084
AspS9I GGNCC 3 cut(s) 880, 940, 1209
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 2 cut(s) 800, 1108
AvaI CYCGRG 2 cut(s) 193, 894
AvaII GGWCC 1 cut(s) 940
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 678
BbvI GCAGC 2 cut(s) 473, 872
BccI CCATC 4 cut(s) 151, 407, 506, 1038
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 5 cut(s) 226, 309, 330, 825, 1058
BcnI CCSGG 1 cut(s) 738
BfaI CTAG 1 cut(s) 1213
BfmI CTRYAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 1085
BglII AGATCT 2 cut(s) 285, 661
BisI GCNGC 2 cut(s) 462, 861
BlsI GCNGC 2 cut(s) 463, 862
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 6 cut(s) 226, 309, 330, 738, 825, 1058
Bme18I GGWCC 1 cut(s) 940
BmeT110I CYCGRG 2 cut(s) 193, 894
BmgT120I GGNCC 3 cut(s) 880, 940, 1209
BmiI GGNNCC 3 cut(s) 294, 882, 1055
BmrFI CCNGG 6 cut(s) 226, 309, 330, 738, 825, 1058
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 6 cut(s) 211, 268, 622, 638, 889, 1003
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 738
BsaBI GATNNNNATC 2 cut(s) 357, 660
BsaJI CCNNGG 5 cut(s) 308, 328, 943, 1057, 1085
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 5 cut(s) 214, 755, 949, 1049, 1091
Bse1I ACTGG 2 cut(s) 219, 384
Bse8I GATNNNNATC 2 cut(s) 357, 660
BseBI CCWGG 5 cut(s) 226, 309, 330, 825, 1058
BseDI CCNNGG 5 cut(s) 308, 328, 943, 1057, 1085
BseGI GGATG 5 cut(s) 143, 267, 613, 661, 904
BseJI GATNNNNATC 2 cut(s) 357, 660
BseLI CCNNNNNNNGG 5 cut(s) 214, 755, 949, 1049, 1091
BseMII CTCAG 3 cut(s) 336, 455, 492
BseNI ACTGG 2 cut(s) 219, 384
BseRI GAGGAG 2 cut(s) 197, 830
BseXI GCAGC 2 cut(s) 473, 872
BsgI GTGCAG 4 cut(s) 879, 972, 1129, 1170
BshFI GGCC 2 cut(s) 881, 1211
BsiHKAI GWGCWC 1 cut(s) 678
BsiHKCI CYCGRG 2 cut(s) 193, 894
BsiSI CCGG 1 cut(s) 738
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 5 cut(s) 214, 755, 949, 1049, 1091
BsmFI GGGAC 1 cut(s) 545
BsmI GAATGC 1 cut(s) 570
BsnI GGCC 2 cut(s) 881, 1211
BsoBI CYCGRG 2 cut(s) 193, 894
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 4 cut(s) 166, 285, 661, 934
Bsp19I CCATGG 2 cut(s) 943, 1085
BspACI CCGC 3 cut(s) 553, 781, 842
BspANI GGCC 2 cut(s) 881, 1211
BspCNI CTCAG 3 cut(s) 337, 454, 491
BspLI GGNNCC 3 cut(s) 294, 882, 1055
BsrI ACTGG 2 cut(s) 219, 384
BssECI CCNNGG 5 cut(s) 308, 328, 943, 1057, 1085
BssMI GATC 4 cut(s) 166, 285, 661, 934
BssT1I CCWWGG 2 cut(s) 943, 1085
Bst2UI CCWGG 5 cut(s) 226, 309, 330, 825, 1058
Bst4CI ACNGT 2 cut(s) 430, 1020
Bst6I CTCTTC 1 cut(s) 1108
BstC8I GCNNGC 3 cut(s) 555, 987, 1065
BstDEI CTNAG 5 cut(s) 129, 345, 441, 478, 968
BstDSI CCRYGG 2 cut(s) 943, 1085
BstF5I GGATG 5 cut(s) 143, 267, 613, 661, 904
BstH2I RGCGCY 1 cut(s) 1085
BstHHI GCGC 2 cut(s) 967, 1084
BstKTI GATC 4 cut(s) 169, 288, 664, 937
BstMBI GATC 4 cut(s) 166, 285, 661, 934
BstMWI GCNNNNNNNGC 4 cut(s) 610, 766, 1142, 1157
BstNI CCWGG 5 cut(s) 226, 309, 330, 825, 1058
BstNSI RCATGY 2 cut(s) 254, 808
BstSCI CCNGG 6 cut(s) 224, 307, 328, 736, 823, 1056
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 473, 872
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 285, 661
BstYI RGATCY 2 cut(s) 285, 661
BsuRI GGCC 2 cut(s) 881, 1211
BtgI CCRYGG 2 cut(s) 943, 1085
BtsCI GGATG 5 cut(s) 143, 267, 613, 661, 904
BtsIMutI CAGTG 3 cut(s) 212, 391, 1025
Cac8I GCNNGC 3 cut(s) 555, 987, 1065
CfoI GCGC 2 cut(s) 967, 1084
Cfr13I GGNCC 3 cut(s) 880, 940, 1209
CseI GACGC 1 cut(s) 981
CsiI ACCWGGT 1 cut(s) 823
Csp6I GTAC 2 cut(s) 190, 595
CviAII CATG 9 cut(s) 251, 563, 716, 765, 805, 903, 944, 992, 1086
CviQI GTAC 2 cut(s) 190, 595
DdeI CTNAG 5 cut(s) 129, 345, 441, 478, 968
DpnI GATC 4 cut(s) 168, 287, 663, 936
DpnII GATC 4 cut(s) 166, 285, 661, 934
DraIII CACNNNGTG 1 cut(s) 857
Eam1104I CTCTTC 1 cut(s) 1108
EarI CTCTTC 1 cut(s) 1108
Eco130I CCWWGG 2 cut(s) 943, 1085
Eco47I GGWCC 1 cut(s) 940
Eco88I CYCGRG 2 cut(s) 193, 894
EcoO109I RGGNCCY 1 cut(s) 1209
EcoRII CCWGG 5 cut(s) 224, 307, 328, 823, 1056
EcoT14I CCWWGG 2 cut(s) 943, 1085
EcoT22I ATGCAT 1 cut(s) 904
ErhI CCWWGG 2 cut(s) 943, 1085
FaeI CATG 9 cut(s) 254, 566, 719, 768, 808, 906, 947, 995, 1089
FalI AAGNNNNNCTT 2 cut(s) 1027, 1059
FaqI GGGAC 1 cut(s) 545
FatI CATG 9 cut(s) 250, 562, 715, 764, 804, 902, 943, 991, 1085
FauI CCCGC 2 cut(s) 546, 849
FauNDI CATATG 2 cut(s) 634, 921
Fnu4HI GCNGC 2 cut(s) 462, 861
FokI GGATG 5 cut(s) 130, 254, 600, 668, 911
Fsp4HI GCNGC 2 cut(s) 462, 861
FspBI CTAG 1 cut(s) 1213
GlaI GCGC 2 cut(s) 966, 1083
GluI GCNGC 2 cut(s) 462, 861
GsuI CTGGAG 1 cut(s) 291
HaeII RGCGCY 1 cut(s) 1085
HaeIII GGCC 2 cut(s) 881, 1211
HapII CCGG 1 cut(s) 738
HgaI GACGC 1 cut(s) 981
HhaI GCGC 2 cut(s) 967, 1084
Hin1II CATG 9 cut(s) 254, 566, 719, 768, 808, 906, 947, 995, 1089
Hin6I GCGC 2 cut(s) 965, 1082
HinP1I GCGC 2 cut(s) 965, 1082
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 6 cut(s) 7, 136, 341, 347, 925, 1005
HpaII CCGG 1 cut(s) 738
HphI GGTGA 2 cut(s) 800, 1108
Hpy166II GTNNAC 2 cut(s) 126, 802
Hpy188I TCNGA 7 cut(s) 114, 346, 352, 444, 481, 576, 930
Hpy188III TCNNGA 3 cut(s) 617, 896, 956
Hpy8I GTNNAC 2 cut(s) 126, 802
Hpy99I CGWCG 3 cut(s) 118, 369, 1013
HpyAV CCTTC 4 cut(s) 168, 232, 1053, 1085
HpyCH4III ACNGT 2 cut(s) 430, 1020
HpyCH4IV ACGT 1 cut(s) 1203
HpyF10VI GCNNNNNNNGC 4 cut(s) 610, 766, 1142, 1157
HpyF3I CTNAG 5 cut(s) 129, 345, 441, 478, 968
HpySE526I ACGT 1 cut(s) 1203
Hsp92II CATG 9 cut(s) 254, 566, 719, 768, 808, 906, 947, 995, 1089
HspAI GCGC 2 cut(s) 965, 1082
Kzo9I GATC 4 cut(s) 166, 285, 661, 934
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 2 cut(s) 473, 872
LweI GCATC 6 cut(s) 211, 268, 622, 638, 889, 1003
MabI ACCWGGT 1 cut(s) 823
MaeI CTAG 1 cut(s) 1213
MaeII ACGT 1 cut(s) 1203
MaeIII GTNAC 2 cut(s) 418, 833
MalI GATC 4 cut(s) 168, 287, 663, 936
MboI GATC 4 cut(s) 166, 285, 661, 934
MboII GAAGA 4 cut(s) 222, 353, 671, 1125
MfeI CAATTG 2 cut(s) 162, 492
MflI RGATCY 2 cut(s) 285, 661
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 6 cut(s) 162, 492, 701, 873, 1179, 1192
MlyI GAGTC 3 cut(s) 16, 356, 1014
MmeI TCCRAC 3 cut(s) 137, 320, 702
Mph1103I ATGCAT 1 cut(s) 904
MseI TTAA 2 cut(s) 395, 468
MslI CAYNNNNRTG 2 cut(s) 510, 1035
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 1 cut(s) 738
MspR9I CCNGG 6 cut(s) 226, 309, 330, 738, 825, 1058
MunI CAATTG 2 cut(s) 162, 492
Mva1269I GAATGC 1 cut(s) 570
MvaI CCWGG 5 cut(s) 226, 309, 330, 825, 1058
MwoI GCNNNNNNNGC 4 cut(s) 610, 766, 1142, 1157
NciI CCSGG 1 cut(s) 738
NcoI CCATGG 2 cut(s) 943, 1085
NdeI CATATG 2 cut(s) 634, 921
NdeII GATC 4 cut(s) 166, 285, 661, 934
NlaIII CATG 9 cut(s) 254, 566, 719, 768, 808, 906, 947, 995, 1089
NlaIV GGNNCC 3 cut(s) 294, 882, 1055
NsiI ATGCAT 1 cut(s) 904
NspI RCATGY 2 cut(s) 254, 808
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 570
PfeI GAWTC 3 cut(s) 136, 341, 925
PflMI CCANNNNNTGG 2 cut(s) 214, 755
PkrI GCNGC 2 cut(s) 463, 862
PleI GAGTC 3 cut(s) 15, 355, 1013
PpsI GAGTC 3 cut(s) 15, 355, 1013
Psp6I CCWGG 5 cut(s) 224, 307, 328, 823, 1056
PspGI CCWGG 5 cut(s) 224, 307, 328, 823, 1056
PspN4I GGNNCC 3 cut(s) 294, 882, 1055
PspPI GGNCC 3 cut(s) 880, 940, 1209
PsrI GAACNNNNNNTAC 2 cut(s) 182, 214
PsuI RGATCY 2 cut(s) 285, 661
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 2 cut(s) 191, 596
RsaNI GTAC 2 cut(s) 190, 595
RseI CAYNNNNRTG 2 cut(s) 510, 1035
SaqAI TTAA 2 cut(s) 395, 468
SatI GCNGC 2 cut(s) 462, 861
Sau3AI GATC 4 cut(s) 166, 285, 661, 934
Sau96I GGNCC 3 cut(s) 880, 940, 1209
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 3 cut(s) 16, 356, 1014
ScrFI CCNGG 6 cut(s) 226, 309, 330, 738, 825, 1058
SduI GDGCHC 1 cut(s) 678
SetI ASST 6 cut(s) 425, 466, 790, 826, 1109, 1206
SexAI ACCWGGT 1 cut(s) 823
SfaNI GCATC 6 cut(s) 211, 268, 622, 638, 889, 1003
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 1 cut(s) 940
SmiMI CAYNNNNRTG 2 cut(s) 510, 1035
Sse9I AATT 6 cut(s) 162, 492, 701, 873, 1179, 1192
SsiI CCGC 3 cut(s) 553, 781, 842
SspMI CTAG 1 cut(s) 1213
StyD4I CCNGG 6 cut(s) 224, 307, 328, 736, 823, 1056
StyI CCWWGG 2 cut(s) 943, 1085
TaaI ACNGT 2 cut(s) 430, 1020
TaiI ACGT 1 cut(s) 1206
TaqI TCGA 5 cut(s) 77, 219, 367, 517, 1011
TasI AATT 6 cut(s) 162, 492, 701, 873, 1179, 1192
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 3 cut(s) 136, 341, 925
Tru1I TTAA 2 cut(s) 395, 468
Tru9I TTAA 2 cut(s) 395, 468
TscAI CASTG 3 cut(s) 219, 391, 1025
TseI GCWGC 2 cut(s) 461, 860
TspDTI ATGAA 4 cut(s) 65, 149, 651, 672
TspRI CASTG 3 cut(s) 219, 391, 1025
Van91I CCANNNNNTGG 2 cut(s) 214, 755
VpaK11BI GGWCC 1 cut(s) 940
XapI RAATTY 1 cut(s) 1192
XceI RCATGY 2 cut(s) 254, 808
XspI CTAG 1 cut(s) 1213
ZrmI AGTACT 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.