Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Reverse (-)

10508967 .. 10510314

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G177200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGGCTAAGAGCTTTGAAGGAAGGCAAAGTTGGAAAGAGAAGGTGAACAAGGATGTTGTTGATGAAGTGGAGGATGACTCGGAGGAAGAGGAGTCTGGTGGTGGTTTGATGCTGAGATTTGAAGAGAATGAGAAGCAGAAGAAAGCTGGAAGAAGAGGATCTGGTGGTGGAGGTGGAGTGTCTCCACCATGTTGTCAAGCAGAGAGGTGTGGTGCTGATTTTGTTGAGGCCAAGAGGTACTACCGCCGCCATAAGGTCTGTGAGTTTCATTCAAAGGCGCCCGTTGTCATGGTTTCCGGCCTTCGACAGCGTTTCTGTCAGCAATGCAGCAGGTTCCATGAGCTAACCGAGTTCGACGAAGCAAAGAGGAGCTGTCGCCGGCGTTTGGCCGGCCACAATGAGCGGCGCCGCAAGAGCTCTGGTGAACCTTATGGAGAAGGCTCAAGCCGAAGAGGGGTTGCTTCCAAGCAATTCCAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

163

Amino Acids

18.48

Weight (kDa)

9.14

Isoelectric Point (pI)

83.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	324
AccB1I	GGYRCC	2 cut(s)	280, 408
AccBSI	CCGCTC	1 cut(s)	406
AciI	CCGC	4 cut(s)	247, 250, 406, 412
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	2 cut(s)	390, 394
AcyI	GRCGYC	2 cut(s)	281, 409
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	256, 388, 457
AgsI	TTSAA	3 cut(s)	20, 125, 276
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
AluBI	AGCT	5 cut(s)	15, 149, 346, 375, 420
AluI	AGCT	5 cut(s)	15, 149, 346, 375, 420
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	169
AoxI	GGCC	4 cut(s)	231, 301, 390, 394
ApeKI	GCWGC	1 cut(s)	330
AspLEI	GCGC	2 cut(s)	283, 411
AsuHPI	GGTGA	2 cut(s)	58, 437
BanI	GGYRCC	2 cut(s)	280, 408
BanII	GRGCYC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	189
BfoI	RGCGCY	2 cut(s)	284, 412
BfuAI	ACCTGC	1 cut(s)	324
BisI	GCNGC	4 cut(s)	250, 331, 407, 412
BlsI	GCNGC	4 cut(s)	251, 332, 408, 413
BmiI	GGNNCC	3 cut(s)	282, 338, 410
BmsI	GCATC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpuEI	CTTGAG	1 cut(s)	430
BsaHI	GRCGYC	2 cut(s)	281, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 388, 457
Bse118I	RCCGGY	2 cut(s)	381, 392
Bse3DI	GCAATG	1 cut(s)	332
BseGI	GGATG	2 cut(s)	61, 82
BseLI	CCNNNNNNNGG	3 cut(s)	256, 388, 457
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	107
BseRI	GAGGAG	2 cut(s)	107, 385
BseXI	GCAGC	1 cut(s)	342
BshFI	GGCC	4 cut(s)	233, 303, 392, 396
BshNI	GGYRCC	2 cut(s)	280, 408
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	3 cut(s)	300, 382, 393
BslI	CCNNNNNNNGG	3 cut(s)	256, 388, 457
BsmAI	GTCTC	1 cut(s)	189
BsnI	GGCC	4 cut(s)	233, 303, 392, 396
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	2 cut(s)	161, 480
BspACI	CCGC	4 cut(s)	247, 250, 406, 412
BspANI	GGCC	4 cut(s)	233, 303, 392, 396
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	282, 338, 410
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	169
BspT107I	GGYRCC	2 cut(s)	280, 408
BsrBI	CCGCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	332
BsrFI	RCCGGY	2 cut(s)	381, 392
BssAI	RCCGGY	2 cut(s)	381, 392
BssMI	GATC	2 cut(s)	161, 480
BssNI	GRCGYC	2 cut(s)	281, 409
Bst6I	CTCTTC	4 cut(s)	84, 120, 151, 448
BstACI	GRCGYC	2 cut(s)	281, 409
BstC8I	GCNNGC	2 cut(s)	383, 394
BstDEI	CTNAG	2 cut(s)	9, 116
BstF5I	GGATG	2 cut(s)	61, 82
BstH2I	RGCGCY	2 cut(s)	284, 412
BstHHI	GCGC	2 cut(s)	283, 411
BstKTI	GATC	2 cut(s)	164, 483
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	2 cut(s)	161, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BsuRI	GGCC	4 cut(s)	233, 303, 392, 396
BtsCI	GGATG	2 cut(s)	61, 82
BveI	ACCTGC	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	383, 394
CfoI	GCGC	2 cut(s)	283, 411
Cfr10I	RCCGGY	2 cut(s)	381, 392
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	3 cut(s)	192, 292, 341
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	9, 116
DinI	GGCGCC	2 cut(s)	282, 410
DpnI	GATC	2 cut(s)	163, 482
DpnII	GATC	2 cut(s)	161, 480
EaeI	YGGCCR	2 cut(s)	390, 394
Eam1104I	CTCTTC	4 cut(s)	84, 120, 151, 448
EarI	CTCTTC	4 cut(s)	84, 120, 151, 448
Ecl136II	GAGCTC	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	422
EgeI	GGCGCC	2 cut(s)	282, 410
EheI	GGCGCC	2 cut(s)	282, 410
FaeI	CATG	3 cut(s)	195, 295, 344
FaiI	YATR	5 cut(s)	193, 255, 293, 342, 435
FatI	CATG	3 cut(s)	191, 291, 340
Fnu4HI	GCNGC	4 cut(s)	250, 331, 407, 412
FokI	GGATG	2 cut(s)	68, 89
FriOI	GRGCYC	1 cut(s)	422
FseI	GGCCGGCC	1 cut(s)	396
Fsp4HI	GCNGC	4 cut(s)	250, 331, 407, 412
GlaI	GCGC	2 cut(s)	282, 410
GluI	GCNGC	4 cut(s)	250, 331, 407, 412
HaeII	RGCGCY	2 cut(s)	284, 412
HaeIII	GGCC	4 cut(s)	233, 303, 392, 396
HapII	CCGG	3 cut(s)	300, 382, 393
HhaI	GCGC	2 cut(s)	283, 411
Hin1I	GRCGYC	2 cut(s)	281, 409
Hin1II	CATG	3 cut(s)	195, 295, 344
Hin6I	GCGC	2 cut(s)	281, 409
HinP1I	GCGC	2 cut(s)	281, 409
HinfI	GANTC	2 cut(s)	80, 95
HpaII	CCGG	3 cut(s)	300, 382, 393
HphI	GGTGA	2 cut(s)	58, 437
Hpy166II	GTNNAC	2 cut(s)	49, 428
Hpy188I	TCNGA	2 cut(s)	85, 485
Hpy188III	TCNNGA	1 cut(s)	478
Hpy8I	GTNNAC	2 cut(s)	49, 428
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	5 cut(s)	14, 18, 37, 314, 434
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	2 cut(s)	9, 116
Hsp92I	GRCGYC	2 cut(s)	281, 409
Hsp92II	CATG	3 cut(s)	195, 295, 344
HspAI	GCGC	2 cut(s)	281, 409
KasI	GGCGCC	2 cut(s)	280, 408
KroI	GCCGGC	2 cut(s)	381, 392
KroNI	GCCGGC	2 cut(s)	383, 394
Kzo9I	GATC	2 cut(s)	161, 480
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	8 cut(s)	84, 135, 150, 313, 319, 395, 406, 408
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	102
MalI	GATC	2 cut(s)	163, 482
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	2 cut(s)	161, 480
MboII	GAAGA	6 cut(s)	101, 137, 154, 165, 168, 465
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	1 cut(s)	473
Mly113I	GGCGCC	2 cut(s)	281, 409
MlyI	GAGTC	2 cut(s)	74, 104
MmeI	TCCRAC	1 cut(s)	14
MreI	CGCCGGCG	1 cut(s)	381
MroNI	GCCGGC	2 cut(s)	381, 392
MspI	CCGG	3 cut(s)	300, 382, 393
MwoI	GCNNNNNNNGC	1 cut(s)	417
NaeI	GCCGGC	2 cut(s)	383, 394
NarI	GGCGCC	2 cut(s)	281, 409
NdeII	GATC	2 cut(s)	161, 480
NgoMIV	GCCGGC	2 cut(s)	381, 392
NlaIII	CATG	3 cut(s)	195, 295, 344
NlaIV	GGNNCC	3 cut(s)	282, 338, 410
PdiI	GCCGGC	2 cut(s)	383, 394
PkrI	GCNGC	4 cut(s)	251, 332, 408, 413
PleI	GAGTC	2 cut(s)	74, 103
PluTI	GGCGCC	2 cut(s)	284, 412
PpsI	GAGTC	2 cut(s)	74, 103
Psp124BI	GAGCTC	1 cut(s)	422
PspN4I	GGNNCC	3 cut(s)	282, 338, 410
PsuI	RGATCY	1 cut(s)	161
RigI	GGCCGGCC	1 cut(s)	396
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SacI	GAGCTC	1 cut(s)	422
SatI	GCNGC	4 cut(s)	250, 331, 407, 412
Sau3AI	GATC	2 cut(s)	161, 480
SchI	GAGTC	2 cut(s)	74, 104
SduI	GDGCHC	1 cut(s)	422
SfaNI	GCATC	1 cut(s)	102
SfoI	GGCGCC	2 cut(s)	282, 410
SgrAI	CRCCGGYG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	1 cut(s)	473
SsiI	CCGC	4 cut(s)	247, 250, 406, 412
SspDI	GGCGCC	2 cut(s)	280, 408
SstI	GAGCTC	1 cut(s)	422
TaqI	TCGA	2 cut(s)	307, 357
TasI	AATT	1 cut(s)	473
TauI	GCSGC	3 cut(s)	252, 409, 414
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	2 cut(s)	81, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.