Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Reverse (-)

28495112 .. 28496655

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1236000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGGGGATGAGTAAATTGGACTCGGACAAGCAGATGAAGGAGAAGCCGCATGTGGTGGTGGTGGTGAAGAAGGAGGAGGAGGAATTTGATGATGAGCTGCAAGTGGACAGGATGAAGAAGGGTAAGAGATCGTTGTCGTCATCATCAGGAGGAGGAGGAGGTGCAATGAGACGGTGTCAGGCAGACAGGTGCACAGCTGATCTGAGCGATGAAAAGAAATATCACAGAAAGCATAAGGTTTGTGACCTTCATTCCAAGTCTCAGGTTGTGCTTGTCTCTGGCCTCCACCAAAGGTTTTGCCAGCAATGCAGCAGATTTCATGAGATATCAGAATTTGACGACACCAAACGGAGCTGTCGTAGCCGTTTGTCAGGACACAATGAACGACGAAGGAAGAATCCAGCCGAGTCTCATGCTGTGGAAGGCTCAAGCCGCAATGTTGGTACAAGGACTCAGTCCACTCACAAGCACTTCCAAATCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009911 GO:0010228 GO:0010229 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

163

Amino Acids

18.55

Weight (kDa)

9.48

Isoelectric Point (pI)

66.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	60 - 133	4.2e-31	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	50, 436
AcsI	RAATTY	2 cut(s)	86, 335
AfaI	GTAC	1 cut(s)	448
AluBI	AGCT	3 cut(s)	100, 200, 357
AluI	AGCT	3 cut(s)	100, 200, 357
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	4 cut(s)	166, 267, 283, 417
Alw44I	GTGCAC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	283
ApaLI	GTGCAC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	100, 312
ApoI	RAATTY	2 cut(s)	86, 335
AsuHPI	GGTGA	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	87, 324
BceAI	ACGGC	1 cut(s)	351
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BcoDI	GTCTC	4 cut(s)	166, 267, 283, 417
BisI	GCNGC	4 cut(s)	50, 101, 313, 436
BlsI	GCNGC	4 cut(s)	51, 102, 314, 437
BpuEI	CTTGAG	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bse3DI	GCAATG	3 cut(s)	174, 314, 445
BseGI	GGATG	2 cut(s)	15, 120
BseMI	GCAATG	3 cut(s)	174, 314, 445
BseMII	CTCAG	3 cut(s)	197, 278, 470
BseRI	GAGGAG	5 cut(s)	92, 95, 168, 171, 174
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	87, 324
BshFI	GGCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	197
BsmAI	GTCTC	4 cut(s)	166, 267, 283, 417
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	131, 202
BspACI	CCGC	2 cut(s)	50, 436
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	3 cut(s)	198, 277, 469
BspHI	TCATGA	1 cut(s)	322
BsrDI	GCAATG	3 cut(s)	174, 314, 445
BssMI	GATC	2 cut(s)	131, 202
Bst4CI	ACNGT	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	3 cut(s)	206, 264, 456
BstF5I	GGATG	2 cut(s)	15, 120
BstKTI	GATC	2 cut(s)	134, 205
BstMAI	GTCTC	4 cut(s)	166, 267, 283, 417
BstMBI	GATC	2 cut(s)	131, 202
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 363, 435
BstNSI	RCATGY	1 cut(s)	56
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	87, 324
BsuRI	GGCC	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	15, 120
Cac8I	GCNNGC	1 cut(s)	305
CciI	TCATGA	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	3 cut(s)	53, 323, 416
CviJI	RGCY	9 cut(s)	49, 100, 200, 285, 357, 366, 407, 429, 435
CviKI_1	RGCY	9 cut(s)	49, 100, 200, 285, 357, 366, 407, 429, 435
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	3 cut(s)	206, 264, 456
DpnI	GATC	2 cut(s)	133, 204
DpnII	GATC	2 cut(s)	131, 202
Eco32I	GATATC	1 cut(s)	330
EcoRV	GATATC	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	3 cut(s)	56, 326, 419
FaiI	YATR	4 cut(s)	54, 237, 324, 417
FatI	CATG	3 cut(s)	52, 322, 415
Fnu4HI	GCNGC	4 cut(s)	50, 101, 313, 436
FokI	GGATG	2 cut(s)	22, 127
Fsp4HI	GCNGC	4 cut(s)	50, 101, 313, 436
GluI	GCNGC	4 cut(s)	50, 101, 313, 436
HaeIII	GGCC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	56, 326, 419
HinfI	GANTC	4 cut(s)	23, 400, 410, 454
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	3 cut(s)	109, 195, 462
Hpy188I	TCNGA	3 cut(s)	28, 207, 334
Hpy188III	TCNNGA	3 cut(s)	150, 323, 375
Hpy8I	GTNNAC	3 cut(s)	109, 195, 462
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	6 cut(s)	34, 67, 115, 260, 387, 419
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	4 cut(s)	103, 167, 195, 312
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 363, 435
HpyF3I	CTNAG	3 cut(s)	206, 264, 456
Hsp92II	CATG	3 cut(s)	56, 326, 419
Kzo9I	GATC	2 cut(s)	131, 202
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	9 cut(s)	97, 135, 167, 175, 251, 267, 317, 360, 417
Lsp1109I	GCAGC	2 cut(s)	87, 324
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	133, 204
MboI	GATC	2 cut(s)	131, 202
MboII	GAAGA	3 cut(s)	82, 130, 409
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	3 cut(s)	17, 86, 335
MlyI	GAGTC	3 cut(s)	17, 419, 448
MnlI	CCTC	8 cut(s)	70, 73, 76, 146, 149, 152, 155, 296
MspA1I	CMGCKG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	309, 363, 435
NdeII	GATC	2 cut(s)	131, 202
NlaIII	CATG	3 cut(s)	56, 326, 419
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	56
PagI	TCATGA	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	400
PflFI	GACNNNGTC	2 cut(s)	177, 457
PkrI	GCNGC	4 cut(s)	51, 102, 314, 437
PleI	GAGTC	3 cut(s)	17, 418, 448
PpsI	GAGTC	3 cut(s)	17, 418, 448
PsyI	GACNNNGTC	2 cut(s)	177, 457
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SatI	GCNGC	4 cut(s)	50, 101, 313, 436
Sau3AI	GATC	2 cut(s)	131, 202
SchI	GAGTC	3 cut(s)	17, 419, 448
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	9 cut(s)	102, 166, 194, 202, 243, 252, 270, 299, 359
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	3 cut(s)	17, 86, 335
SsiI	CCGC	2 cut(s)	50, 436
TaaI	ACNGT	1 cut(s)	177
TasI	AATT	3 cut(s)	17, 86, 335
TauI	GCSGC	2 cut(s)	52, 438
TfiI	GAWTC	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	100, 312
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	6 cut(s)	53, 131, 228, 242, 311, 399
TspGWI	ACGGA	1 cut(s)	367
Tth111I	GACNNNGTC	2 cut(s)	177, 457
VneI	GTGCAC	1 cut(s)	193
XapI	RAATTY	2 cut(s)	86, 335
XceI	RCATGY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.