Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Reverse (-)

27116371 .. 27117626

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGAGGCAAACTTGGAAAGAAAAGATGCTCAACAAGAATGCTGATGAAGTTGAAGATGACTCGGACGAAGATGAGACTAGTGGCCACGGTAGCGGGTTGATCAGCATAAGATTTGAAGAAAATGAGAAGCACAAGGTCAAGGCAGCTGGGAGTACTGGAAAAAAATCAGGATCCAGTAGCGGAGGTGGAGGAGGAGCGTCTTCAGCACCGAGTTGTCAAGCAGATAGGTGTGGTGCTGATTTGGGTGATGCAAAGATCTACCATCGCCGCCATAAGGTTTGTGAGTTTCACTCCAAGGCAGCTATTGTGGTCGTCTCCGGGGCTCGACAGAGGTTTTGTCAGCAATGCAGCAGGTTCCATGAGCTAGCTGAGTTTGATGAAGCAAAGAGAAGCTGTCGCCGACGTTTGGCGGGTCACAATGAGAGGCGCCGCAAGAGCTCAGGTGAACCTTATGGAGAGGGCTCAAGCCGCCGGGGTGGTATCAGTCATCAATACCGATCAGAAAGTACTCAGGCTACTACTAAACATCATATGGCATCCCCAGCCCCGGGAAACACTGCTAATTCCAAGCATTTCCAGATCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

197

Amino Acids

21.45

Weight (kDa)

9.18

Isoelectric Point (pI)

59.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	73 - 146	5.5e-32	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AccB1I	GGYRCC	1 cut(s)	429
AciI	CCGC	6 cut(s)	96, 183, 271, 413, 433, 472
AclWI	GGATC	2 cut(s)	168, 181
AcoI	YGGCCR	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	2 cut(s)	157, 511
AfiI	CCNNNNNNNGG	4 cut(s)	277, 409, 550, 551
AgsI	TTSAA	2 cut(s)	56, 119
AhlI	ACTAGT	1 cut(s)	80
AluBI	AGCT	7 cut(s)	149, 305, 367, 371, 396, 441, 588
AluI	AGCT	7 cut(s)	149, 305, 367, 371, 396, 441, 588
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	2 cut(s)	71, 322
AlwI	GGATC	2 cut(s)	168, 181
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	3 cut(s)	146, 302, 351
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspLEI	GCGC	1 cut(s)	432
AsuC2I	CCSGG	4 cut(s)	322, 476, 551, 552
AsuHPI	GGTGA	2 cut(s)	260, 458
AsuNHI	GCTAGC	1 cut(s)	367
AvaI	CYCGRG	1 cut(s)	550
BalI	TGGCCA	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	429
BanII	GRGCYC	3 cut(s)	328, 443, 467
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	3 cut(s)	158, 314, 363
BccI	CCATC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	4 cut(s)	322, 476, 551, 552
BcoDI	GTCTC	2 cut(s)	71, 322
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	2 cut(s)	81, 368
BfoI	RGCGCY	1 cut(s)	433
BfuAI	ACCTGC	1 cut(s)	345
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	6 cut(s)	147, 271, 303, 352, 433, 472
BlsI	GCNGC	6 cut(s)	148, 272, 304, 353, 434, 473
BmcAI	AGTACT	2 cut(s)	157, 511
Bme1390I	CCNGG	4 cut(s)	322, 476, 551, 552
BmeT110I	CYCGRG	1 cut(s)	550
BmiI	GGNNCC	3 cut(s)	175, 359, 431
BmrFI	CCNGG	4 cut(s)	322, 476, 551, 552
BmsI	GCATC	3 cut(s)	18, 241, 548
BmtI	GCTAGC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bpu10I	CCTNAGC	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	451
BpuMI	CCSGG	4 cut(s)	322, 476, 551, 552
BsaHI	GRCGYC	1 cut(s)	430
BsaJI	CCNNGG	6 cut(s)	88, 297, 321, 475, 549, 550
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 409, 550, 551
Bse1I	ACTGG	2 cut(s)	163, 177
Bse3DI	GCAATG	1 cut(s)	353
BseDI	CCNNGG	6 cut(s)	88, 297, 321, 475, 549, 550
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	4 cut(s)	277, 409, 550, 551
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	3 cut(s)	363, 456, 527
BseNI	ACTGG	2 cut(s)	163, 177
BseRI	GAGGAG	2 cut(s)	207, 210
BseXI	GCAGC	3 cut(s)	158, 314, 363
BseYI	CCCAGC	2 cut(s)	149, 544
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	443
BsiHKCI	CYCGRG	1 cut(s)	550
BsiSI	CCGG	3 cut(s)	321, 475, 551
BslI	CCNNNNNNNGG	4 cut(s)	277, 409, 550, 551
BsmAI	GTCTC	2 cut(s)	71, 322
BsmBI	CGTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	550
Bsp1286I	GDGCHC	3 cut(s)	328, 443, 467
Bsp143I	GATC	5 cut(s)	102, 173, 258, 500, 582
BspACI	CCGC	6 cut(s)	96, 183, 271, 413, 433, 472
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	364, 455, 526
BspLI	GGNNCC	3 cut(s)	175, 359, 431
BspMI	ACCTGC	1 cut(s)	345
BspOI	GCTAGC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	168, 181
BspT107I	GGYRCC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	353
BsrI	ACTGG	2 cut(s)	163, 177
BssECI	CCNNGG	6 cut(s)	88, 297, 321, 475, 549, 550
BssMI	GATC	5 cut(s)	102, 173, 258, 500, 582
BssNI	GRCGYC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	3 cut(s)	372, 442, 513
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	539
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	5 cut(s)	105, 176, 261, 503, 585
BstMAI	GTCTC	2 cut(s)	71, 322
BstMBI	GATC	5 cut(s)	102, 173, 258, 500, 582
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 206, 438, 471, 545
BstSCI	CCNGG	4 cut(s)	320, 474, 549, 550
BstV1I	GCAGC	3 cut(s)	158, 314, 363
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	2 cut(s)	173, 258
BstYI	RGATCY	2 cut(s)	173, 258
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	539
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	558
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	1 cut(s)	432
Cfr9I	CCCGGG	1 cut(s)	550
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	156, 510
CviAII	CATG	1 cut(s)	362
CviQI	GTAC	2 cut(s)	156, 510
DdeI	CTNAG	3 cut(s)	372, 442, 513
DinI	GGCGCC	1 cut(s)	431
DpnI	GATC	5 cut(s)	104, 175, 260, 502, 584
DpnII	GATC	5 cut(s)	102, 173, 258, 500, 582
EaeI	YGGCCR	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	3 cut(s)	328, 443, 467
Eco53kI	GAGCTC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	550
EcoICRI	GAGCTC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	3 cut(s)	328, 443, 467
EgeI	GGCGCC	1 cut(s)	431
EheI	GGCGCC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	1 cut(s)	365
FaiI	YATR	6 cut(s)	110, 276, 363, 456, 534, 536
FatI	CATG	1 cut(s)	361
FauI	CCCGC	2 cut(s)	89, 406
FauNDI	CATATG	1 cut(s)	534
FbaI	TGATCA	1 cut(s)	102
Fnu4HI	GCNGC	6 cut(s)	147, 271, 303, 352, 433, 472
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	3 cut(s)	328, 443, 467
Fsp4HI	GCNGC	6 cut(s)	147, 271, 303, 352, 433, 472
FspBI	CTAG	2 cut(s)	81, 368
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	6 cut(s)	147, 271, 303, 352, 433, 472
GsaI	CCCAGC	2 cut(s)	153, 548
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	3 cut(s)	321, 475, 551
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	430
Hin1II	CATG	1 cut(s)	365
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	3 cut(s)	321, 475, 551
HphI	GGTGA	2 cut(s)	260, 458
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	2 cut(s)	67, 505
Hpy188III	TCNNGA	2 cut(s)	171, 580
Hpy8I	GTNNAC	1 cut(s)	449
Hpy99I	CGWCG	1 cut(s)	408
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	254, 351
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 206, 438, 471, 545
HpyF3I	CTNAG	3 cut(s)	372, 442, 513
HpySE526I	ACGT	1 cut(s)	406
Hsp92I	GRCGYC	1 cut(s)	430
Hsp92II	CATG	1 cut(s)	365
HspAI	GCGC	1 cut(s)	430
KasI	GGCGCC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	5 cut(s)	102, 173, 258, 500, 582
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	3 cut(s)	158, 314, 363
LweI	GCATC	3 cut(s)	18, 241, 548
MaeI	CTAG	2 cut(s)	81, 368
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	5 cut(s)	104, 175, 260, 502, 584
MboI	GATC	5 cut(s)	102, 173, 258, 500, 582
MboII	GAAGA	4 cut(s)	68, 83, 131, 195
MflI	RGATCY	2 cut(s)	173, 258
MhlI	GDGCHC	3 cut(s)	328, 443, 467
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	1 cut(s)	565
MluNI	TGGCCA	1 cut(s)	87
Mly113I	GGCGCC	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	6 cut(s)	179, 185, 188, 327, 420, 454
Mox20I	TGGCCA	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	3 cut(s)	321, 475, 551
MspR9I	CCNGG	4 cut(s)	322, 476, 551, 552
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	5 cut(s)	93, 206, 438, 471, 545
NarI	GGCGCC	1 cut(s)	430
NciI	CCSGG	4 cut(s)	322, 476, 551, 552
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	5 cut(s)	102, 173, 258, 500, 582
NheI	GCTAGC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	365
NlaIV	GGNNCC	3 cut(s)	175, 359, 431
NmuCI	GTSAC	1 cut(s)	416
PctI	GAATGC	1 cut(s)	46
PkrI	GCNGC	6 cut(s)	148, 272, 304, 353, 434, 473
PleI	GAGTC	1 cut(s)	56
PluTI	GGCGCC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	443
PspFI	CCCAGC	2 cut(s)	149, 544
PspN4I	GGNNCC	3 cut(s)	175, 359, 431
PsuI	RGATCY	2 cut(s)	173, 258
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	157, 511
RsaNI	GTAC	2 cut(s)	156, 510
SacI	GAGCTC	1 cut(s)	443
SatI	GCNGC	6 cut(s)	147, 271, 303, 352, 433, 472
Sau3AI	GATC	5 cut(s)	102, 173, 258, 500, 582
ScaI	AGTACT	2 cut(s)	157, 511
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	4 cut(s)	322, 476, 551, 552
SduI	GDGCHC	3 cut(s)	328, 443, 467
SfaNI	GCATC	3 cut(s)	18, 241, 548
SfoI	GGCGCC	1 cut(s)	431
SmaI	CCCGGG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
SpeI	ACTAGT	1 cut(s)	80
Sse9I	AATT	1 cut(s)	565
SsiI	CCGC	6 cut(s)	96, 183, 271, 413, 433, 472
SspDI	GGCGCC	1 cut(s)	429
SspMI	CTAG	2 cut(s)	81, 368
SstI	GAGCTC	1 cut(s)	443
StyD4I	CCNGG	4 cut(s)	320, 474, 549, 550
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	328
TasI	AATT	1 cut(s)	565
TatI	WGTACW	2 cut(s)	155, 509
TauI	GCSGC	3 cut(s)	273, 435, 474
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	3 cut(s)	146, 302, 351
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	63, 396
TspMI	CCCGGG	1 cut(s)	550
TspRI	CASTG	1 cut(s)	565
XmaI	CCCGGG	1 cut(s)	550
XspI	CTAG	2 cut(s)	81, 368
ZrmI	AGTACT	2 cut(s)	157, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.