Rroxscaffold_1G00047230

MAP kinase kinase kinase kinase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015294
Physical Location & Seq
Forward (+)
66769473 .. 66770625
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047230.1

Sequence Viewer

Length: 789 bp
ATGGAAAACGGCCAGAAAAAGAGCTCCTCCGGCGACACATTCTCCTTCCCGAGCACACCGGTCCGCAACCAAGACTCCGAAGACTTCGAATTCGGCTGCTACACACCCGACTCTGCCTCCAGTGACCCCTGCAAGGACTCCCCAGCAGATCATTTGTTCTTCAATGGCAAACTCCTACCTCATGCCTTCCCTTGTCAACCAAACAATAATGGCATGCTACTTGTCGTTGATCACTCTCGTCGCACAAGCCGAACGAACAGCATTAGCAGCAAGGACTCGCTTTCGCTCATGTCCTCAAGAAGCAATAGCACTAACAGTAGAAGCAGCACTAGCAGTTGCAGCAGCAGCGCAAGGACAAGTTCAAGTGACAATTCTGAGAGGAAGTTGATGCATCATCATCACTACAGCAGAACGGCACCGTTTAGATCATCGGACAGATACAAAACCGGAGGTGAAAAAGTGGAGATTGCTGCAGCTGGGAAAGGAAAACCCAACAAAGCAAAGAAGAAAAGGAAGGTGAAGACGGTTGTGGTCCGGCGCCGGAGGCTCTGCCGGAAGTTTTTCCGGTGGCTGGTTTCGGCCTGCATAAAGTGTCACGCAATGGAGCCATCCAAGAAAAGTGATGTTGTTGATCATGCAAAAGATGGGAATCATCTTAATATCAAAGAGAGAAACAGAGAGGAGATCCTGAGTGAGAGTGAGAGAGTGGAGAAACTGAGGACCACACCCACTTGGATACTAATGGTTCCTACAAACTCACCTAGAAAAGAGGGTTGTGAGTTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.49

Weight (kDa)

9.71

Isoelectric Point (pI)

65.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53163 AT3G15250
fragaria_vesca FvH4_3g19630
malus_domestica MD03G1230800.v1.1
prunus_persica Prupe.4G177000_v2.0.a1
pyrus_communis pycom11g22350
rosa_chinensis RchiOBHm_Chr5g0032821
rosa_laevigata RLG00000033431
rosa_multiflora Rmu_sc0000986.1_g000045
rosa_roxburghii Rroxscaffold_1G00047230
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG226700 Rh5BG227800 Rh5CG255700 Rh5DG232600
rosa_wichuraiana Rw5G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 415, 537
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 679
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 538
AfiI CCNNNNNNNGG 2 cut(s) 133, 571
AgeI ACCGGT 1 cut(s) 58
AgsI TTSAA 2 cut(s) 163, 363
AluBI AGCT 2 cut(s) 24, 476
AluI AGCT 2 cut(s) 24, 476
Alw21I GWGCWC 2 cut(s) 26, 56
AlwI GGATC 1 cut(s) 679
Ama87I CYCGRG 1 cut(s) 49
AoxI GGCC 2 cut(s) 10, 579
ApeKI GCWGC 8 cut(s) 96, 267, 324, 339, 342, 345, 470, 473
ApoI RAATTY 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AsiGI ACCGGT 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 560
AspLEI GCGC 2 cut(s) 350, 540
AspS9I GGNCC 3 cut(s) 61, 532, 720
AsuHPI GGTGA 3 cut(s) 464, 529, 750
AsuII TTCGAA 1 cut(s) 87
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 3 cut(s) 61, 532, 720
BanI GGYRCC 2 cut(s) 415, 537
BanII GRGCYC 1 cut(s) 26
BbsI GAAGAC 2 cut(s) 87, 527
Bbv12I GWGCWC 2 cut(s) 26, 56
BbvI GCAGC 8 cut(s) 83, 279, 336, 351, 354, 357, 457, 485
BccI CCATC 2 cut(s) 616, 638
BceAI ACGGC 2 cut(s) 25, 429
BciVI GTATCC 1 cut(s) 729
BclI TGATCA 2 cut(s) 229, 631
BfaI CTAG 2 cut(s) 330, 762
BfmI CTRYAG 2 cut(s) 403, 471
BfoI RGCGCY 1 cut(s) 541
BfuI GTATCC 1 cut(s) 729
BisI GCNGC 8 cut(s) 97, 268, 325, 340, 343, 346, 471, 474
BlsI GCNGC 8 cut(s) 98, 269, 326, 341, 344, 347, 472, 475
Bme18I GGWCC 3 cut(s) 61, 532, 720
BmeT110I CYCGRG 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 61, 532, 720
BmiI GGNNCC 4 cut(s) 417, 539, 606, 747
BmsI GCATC 2 cut(s) 378, 400
BpiI GAAGAC 2 cut(s) 87, 527
BpmI CTGGAG 1 cut(s) 103
Bpu14I TTCGAA 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 538
BsaWI WCCGGW 3 cut(s) 58, 446, 564
BsaXI ACNNNNNCTCC 6 cut(s) 26, 56, 59, 89, 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 571
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 606
Bse8I GATNNNNATC 1 cut(s) 648
BseGI GGATG 1 cut(s) 608
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 133, 571
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 3 cut(s) 366, 680, 707
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 2 cut(s) 16, 695
BseXI GCAGC 8 cut(s) 83, 279, 336, 351, 354, 357, 457, 485
BseYI CCCAGC 2 cut(s) 142, 476
BshFI GGCC 2 cut(s) 12, 581
BshNI GGYRCC 2 cut(s) 415, 537
BshTI ACCGGT 1 cut(s) 58
BsiHKAI GWGCWC 2 cut(s) 26, 56
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 7 cut(s) 30, 59, 447, 535, 541, 553, 565
BslI CCNNNNNNNGG 2 cut(s) 133, 571
BsnI GGCC 2 cut(s) 12, 581
BsoBI CYCGRG 1 cut(s) 49
Bsp119I TTCGAA 1 cut(s) 87
Bsp1286I GDGCHC 2 cut(s) 26, 56
Bsp143I GATC 5 cut(s) 148, 229, 425, 631, 684
BspACI CCGC 1 cut(s) 64
BspANI GGCC 2 cut(s) 12, 581
BspCNI CTCAG 3 cut(s) 367, 681, 708
BspLI GGNNCC 4 cut(s) 417, 539, 606, 747
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 1 cut(s) 679
BspT104I TTCGAA 1 cut(s) 87
BspT107I GGYRCC 2 cut(s) 415, 537
BsrDI GCAATG 1 cut(s) 606
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 58
BssMI GATC 5 cut(s) 148, 229, 425, 631, 684
BssNI GRCGYC 1 cut(s) 538
Bst4CI ACNGT 3 cut(s) 317, 420, 526
BstACI GRCGYC 1 cut(s) 538
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 215, 583
BstDEI CTNAG 3 cut(s) 375, 689, 716
BstF5I GGATG 1 cut(s) 608
BstH2I RGCGCY 1 cut(s) 541
BstHHI GCGC 2 cut(s) 350, 540
BstKTI GATC 5 cut(s) 151, 232, 428, 634, 687
BstMBI GATC 5 cut(s) 148, 229, 425, 631, 684
BstMWI GCNNNNNNNGC 6 cut(s) 30, 267, 330, 339, 345, 544
BstNSI RCATGY 1 cut(s) 217
BstSFI CTRYAG 2 cut(s) 403, 471
BstV1I GCAGC 8 cut(s) 83, 279, 336, 351, 354, 357, 457, 485
BstV2I GAAGAC 2 cut(s) 87, 527
BstX2I RGATCY 1 cut(s) 684
BstYI RGATCY 1 cut(s) 684
BsuI GTATCC 1 cut(s) 729
BsuRI GGCC 2 cut(s) 12, 581
BtsCI GGATG 1 cut(s) 608
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 215, 583
CfoI GCGC 2 cut(s) 350, 540
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 3 cut(s) 61, 532, 720
CpoI CGGWCCG 1 cut(s) 61
CspAI ACCGGT 1 cut(s) 58
CspI CGGWCCG 1 cut(s) 61
CviAII CATG 4 cut(s) 182, 214, 289, 635
CviJI RGCY 9 cut(s) 12, 24, 96, 249, 476, 547, 571, 581, 607
CviKI_1 RGCY 9 cut(s) 12, 24, 96, 249, 476, 547, 571, 581, 607
DdeI CTNAG 3 cut(s) 375, 689, 716
DinI GGCGCC 1 cut(s) 539
DpnI GATC 5 cut(s) 150, 231, 427, 633, 686
DpnII GATC 5 cut(s) 148, 229, 425, 631, 684
EaeI YGGCCR 1 cut(s) 10
Ecl136II GAGCTC 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 26
Eco47I GGWCC 3 cut(s) 61, 532, 720
Eco53kI GAGCTC 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 539
EheI GGCGCC 1 cut(s) 539
FaeI CATG 4 cut(s) 185, 217, 292, 638
FaiI YATR 5 cut(s) 183, 215, 290, 587, 636
FatI CATG 4 cut(s) 181, 213, 288, 634
FbaI TGATCA 2 cut(s) 229, 631
Fnu4HI GCNGC 8 cut(s) 97, 268, 325, 340, 343, 346, 471, 474
FokI GGATG 1 cut(s) 595
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 8 cut(s) 97, 268, 325, 340, 343, 346, 471, 474
FspBI CTAG 2 cut(s) 330, 762
GlaI GCGC 2 cut(s) 349, 539
GluI GCNGC 8 cut(s) 97, 268, 325, 340, 343, 346, 471, 474
GsaI CCCAGC 2 cut(s) 146, 480
GsuI CTGGAG 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 541
HaeIII GGCC 2 cut(s) 12, 581
HapII CCGG 7 cut(s) 30, 59, 447, 535, 541, 553, 565
HhaI GCGC 2 cut(s) 350, 540
Hin1I GRCGYC 1 cut(s) 538
Hin1II CATG 4 cut(s) 185, 217, 292, 638
Hin6I GCGC 2 cut(s) 348, 538
HinP1I GCGC 2 cut(s) 348, 538
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HinfI GANTC 5 cut(s) 74, 110, 137, 275, 649
HpaII CCGG 7 cut(s) 30, 59, 447, 535, 541, 553, 565
HphI GGTGA 3 cut(s) 464, 529, 750
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 3 cut(s) 79, 376, 433
Hpy188III TCNNGA 3 cut(s) 49, 297, 688
Hpy8I GTNNAC 1 cut(s) 197
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 3 cut(s) 55, 196, 508
HpyCH4III ACNGT 3 cut(s) 317, 420, 526
HpyCH4V TGCA 6 cut(s) 132, 339, 391, 473, 585, 638
HpyF10VI GCNNNNNNNGC 6 cut(s) 30, 267, 330, 339, 345, 544
HpyF3I CTNAG 3 cut(s) 375, 689, 716
Hsp92I GRCGYC 1 cut(s) 538
Hsp92II CATG 4 cut(s) 185, 217, 292, 638
HspAI GCGC 2 cut(s) 348, 538
KasI GGCGCC 1 cut(s) 537
Ksp22I TGATCA 2 cut(s) 229, 631
Kzo9I GATC 5 cut(s) 148, 229, 425, 631, 684
LmnI GCTCC 2 cut(s) 29, 604
Lsp1109I GCAGC 8 cut(s) 83, 279, 336, 351, 354, 357, 457, 485
LweI GCATC 2 cut(s) 378, 400
MaeI CTAG 2 cut(s) 330, 762
MaeIII GTNAC 3 cut(s) 122, 365, 593
MalI GATC 5 cut(s) 150, 231, 427, 633, 686
MboI GATC 5 cut(s) 148, 229, 425, 631, 684
MboII GAAGA 4 cut(s) 92, 151, 517, 532
MflI RGATCY 1 cut(s) 684
MhlI GDGCHC 2 cut(s) 26, 56
MluCI AATT 2 cut(s) 89, 370
Mly113I GGCGCC 1 cut(s) 538
MlyI GAGTC 4 cut(s) 68, 104, 131, 269
Mph1103I ATGCAT 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 560
MseI TTAA 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 7 cut(s) 30, 59, 447, 535, 541, 553, 565
MwoI GCNNNNNNNGC 6 cut(s) 30, 267, 330, 339, 345, 544
NarI GGCGCC 1 cut(s) 538
NdeII GATC 5 cut(s) 148, 229, 425, 631, 684
NlaIII CATG 4 cut(s) 185, 217, 292, 638
NlaIV GGNNCC 4 cut(s) 417, 539, 606, 747
NmuCI GTSAC 3 cut(s) 122, 365, 593
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 1 cut(s) 217
NspV TTCGAA 1 cut(s) 87
PaeI GCATGC 1 cut(s) 217
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 1 cut(s) 649
PinAI ACCGGT 1 cut(s) 58
PkrI GCNGC 8 cut(s) 98, 269, 326, 341, 344, 347, 472, 475
PleI GAGTC 4 cut(s) 68, 104, 131, 269
PluTI GGCGCC 1 cut(s) 541
PpsI GAGTC 4 cut(s) 68, 104, 131, 269
Psp124BI GAGCTC 1 cut(s) 26
PspFI CCCAGC 2 cut(s) 142, 476
PspN4I GGNNCC 4 cut(s) 417, 539, 606, 747
PspPI GGNCC 3 cut(s) 61, 532, 720
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 684
PvuII CAGCTG 1 cut(s) 476
Rsr2I CGGWCCG 1 cut(s) 61
RsrII CGGWCCG 1 cut(s) 61
SacI GAGCTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 8 cut(s) 97, 268, 325, 340, 343, 346, 471, 474
Sau3AI GATC 5 cut(s) 148, 229, 425, 631, 684
Sau96I GGNCC 3 cut(s) 61, 532, 720
SchI GAGTC 4 cut(s) 68, 104, 131, 269
SduI GDGCHC 2 cut(s) 26, 56
SetI ASST 6 cut(s) 26, 181, 454, 478, 519, 763
SfaNI GCATC 2 cut(s) 378, 400
SfcI CTRYAG 2 cut(s) 403, 471
SfoI GGCGCC 1 cut(s) 539
SfuI TTCGAA 1 cut(s) 87
SinI GGWCC 3 cut(s) 61, 532, 720
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SphI GCATGC 1 cut(s) 217
Sse9I AATT 2 cut(s) 89, 370
SsiI CCGC 1 cut(s) 64
SspDI GGCGCC 1 cut(s) 537
SspMI CTAG 2 cut(s) 330, 762
SstI GAGCTC 1 cut(s) 26
TaaI ACNGT 3 cut(s) 317, 420, 526
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 89, 370
TfiI GAWTC 1 cut(s) 649
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 3 cut(s) 122, 365, 593
TseI GCWGC 8 cut(s) 96, 267, 324, 339, 342, 345, 470, 473
Tsp45I GTSAC 3 cut(s) 122, 365, 593
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 3 cut(s) 61, 532, 720
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 2 cut(s) 330, 762
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.