Prupe.4G177000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015294
Physical Location & Seq
Reverse (-)
10499549 .. 10500632
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G177000.1

Sequence Viewer

Length: 723 bp
ATGGAAAACCGCCGGCTAAAGAGCACCTCCGGCGACACATTCTCCTTTCCGAGCACTCCGATCCACGAGCAAGACTCCGATTTCGAATTCGGATGCTTCACCCCTGACTCAGCCTCCAGCACTGATCCCTGCAAAGACTCCCCTGCAGACCATTTGTTCTTCAATGGCAGGCTCTTACCACATGCCTTCCCATTTCAACCAATTAGCAACGGTTTTATGGGTGTCGATAGTAATTCTCGGAGAACAAGCCGGACGAGCAGCATTAGCAGCAAGGACTCTCTCATGTCCTCAAGAAGCAATAGCACCAACAGCAGGAGCAGCAGCTGCAGCAGCAGCGCAAGGACAAGCTCAAGCGACAACTCTGAGAGGAAATTGGTGCACCAAAACAAATTGGGTTCTAGAGCTTCATCAGATAGATACAAAGGAAACAGAGCTAATAATCTCGGAGGTGGACAAGTTTATGGTTCTTCTCAGAGATGGCAATTCATAACAGCTGTGCCTGTACCGGCTTCTTTAAGCCGTGACAATTCTCGGAAGAAGGCGAAAGTGGATCAGCTTGAAGGGAAGGAGAAACCCATCAAAGGGAAGAGAAAAGGCCGGGTGAAGACGGTGGTGGTCCGCCGGAGTTTTGGCCGGAGGTTTTTCCGGTGGCTTGTTTGGACCTGCAGAAAGTGTCACGCAATGGAACCGTCCAACAAAAGTAGTGATCATGTAATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.74

Weight (kDa)

10.4

Isoelectric Point (pI)

63.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53163 AT3G15250
fragaria_vesca FvH4_3g19630
malus_domestica MD03G1230800.v1.1
prunus_persica Prupe.4G177000_v2.0.a1
pyrus_communis pycom11g22350
rosa_chinensis RchiOBHm_Chr5g0032821
rosa_laevigata RLG00000033431
rosa_multiflora Rmu_sc0000986.1_g000045
rosa_roxburghii Rroxscaffold_1G00047230
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG226700 Rh5BG227800 Rh5CG255700 Rh5DG232600
rosa_wichuraiana Rw5G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 671
AciI CCGC 2 cut(s) 10, 619
AclWI GGATC 3 cut(s) 55, 119, 558
AcoI YGGCCR 1 cut(s) 631
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 504
AfiI CCNNNNNNNGG 3 cut(s) 312, 581, 582
AgsI TTSAA 3 cut(s) 163, 197, 560
AluBI AGCT 6 cut(s) 324, 348, 404, 434, 494, 556
AluI AGCT 6 cut(s) 324, 348, 404, 434, 494, 556
Alw21I GWGCWC 3 cut(s) 26, 56, 381
Alw44I GTGCAC 1 cut(s) 377
AlwI GGATC 3 cut(s) 55, 119, 558
AlwNI CAGNNNCTG 1 cut(s) 324
AoxI GGCC 2 cut(s) 595, 631
ApaLI GTGCAC 1 cut(s) 377
ApeKI GCWGC 8 cut(s) 258, 267, 318, 321, 324, 327, 330, 333
ApoI RAATTY 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AseI ATTAAT 1 cut(s) 717
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 616, 660
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 2 cut(s) 91, 613
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 2 cut(s) 616, 660
BaeGI GKGCMC 1 cut(s) 381
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 611
Bbv12I GWGCWC 3 cut(s) 26, 56, 381
BbvI GCAGC 8 cut(s) 270, 279, 311, 330, 333, 339, 342, 345
BccI CCATC 2 cut(s) 471, 584
BceAI ACGGC 1 cut(s) 504
BclI TGATCA 1 cut(s) 706
BcnI CCSGG 1 cut(s) 599
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 3 cut(s) 144, 325, 664
BfuAI ACCTGC 1 cut(s) 671
BisI GCNGC 8 cut(s) 259, 268, 319, 322, 325, 328, 331, 334
BlsI GCNGC 8 cut(s) 260, 269, 320, 323, 326, 329, 332, 335
Bme1390I CCNGG 1 cut(s) 599
Bme18I GGWCC 2 cut(s) 616, 660
BmgT120I GGNCC 2 cut(s) 616, 660
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 1 cut(s) 599
BmsI GCATC 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 611
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpmI CTGGAG 1 cut(s) 100
Bpu14I TTCGAA 1 cut(s) 84
BpuEI CTTGAG 2 cut(s) 274, 334
BpuMI CCSGG 1 cut(s) 599
BsaWI WCCGGW 1 cut(s) 645
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 581, 582
Bse118I RCCGGY 2 cut(s) 12, 505
Bse3DI GCAATG 1 cut(s) 687
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 3 cut(s) 312, 581, 582
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 3 cut(s) 123, 354, 485
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 8 cut(s) 270, 279, 311, 330, 333, 339, 342, 345
BshFI GGCC 2 cut(s) 597, 633
BsiHKAI GWGCWC 3 cut(s) 26, 56, 381
BsiSI CCGG 8 cut(s) 13, 30, 250, 506, 598, 622, 634, 646
BslI CCNNNNNNNGG 3 cut(s) 312, 581, 582
BsnI GGCC 2 cut(s) 597, 633
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 3 cut(s) 26, 56, 381
Bsp143I GATC 4 cut(s) 60, 124, 550, 706
BspACI CCGC 2 cut(s) 10, 619
BspANI GGCC 2 cut(s) 597, 633
BspCNI CTCAG 3 cut(s) 122, 355, 484
BspLI GGNNCC 1 cut(s) 687
BspMAI CTGCAG 3 cut(s) 148, 329, 668
BspMI ACCTGC 1 cut(s) 671
BspPI GGATC 3 cut(s) 55, 119, 558
BspT104I TTCGAA 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 2 cut(s) 12, 505
BssAI RCCGGY 2 cut(s) 12, 505
BssMI GATC 4 cut(s) 60, 124, 550, 706
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst4CI ACNGT 3 cut(s) 212, 610, 690
Bst6I CTCTTC 1 cut(s) 581
BstAPI GCANNNNNTGC 1 cut(s) 324
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 14, 170
BstDEI CTNAG 3 cut(s) 109, 363, 471
BstF5I GGATG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 4 cut(s) 63, 127, 553, 709
BstMBI GATC 4 cut(s) 60, 124, 550, 706
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 597
BstSFI CTRYAG 3 cut(s) 144, 325, 664
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 8 cut(s) 270, 279, 311, 330, 333, 339, 342, 345
BstV2I GAAGAC 1 cut(s) 611
BsuRI GGCC 2 cut(s) 597, 633
BtsCI GGATG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 671
Cac8I GCNNGC 2 cut(s) 14, 170
CaiI CAGNNNCTG 1 cut(s) 324
CfoI GCGC 1 cut(s) 338
Cfr10I RCCGGY 2 cut(s) 12, 505
Cfr13I GGNCC 2 cut(s) 616, 660
Csp6I GTAC 1 cut(s) 503
CviAII CATG 3 cut(s) 182, 283, 710
CviQI GTAC 1 cut(s) 503
DdeI CTNAG 3 cut(s) 109, 363, 471
DpnI GATC 4 cut(s) 62, 126, 552, 708
DpnII GATC 4 cut(s) 60, 124, 550, 706
EaeI YGGCCR 1 cut(s) 631
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
EciI GGCGGA 1 cut(s) 608
Eco47I GGWCC 2 cut(s) 616, 660
EcoRI GAATTC 1 cut(s) 86
FaeI CATG 3 cut(s) 185, 286, 713
FaiI YATR 6 cut(s) 183, 218, 284, 462, 488, 711
FatI CATG 3 cut(s) 181, 282, 709
FbaI TGATCA 1 cut(s) 706
Fnu4HI GCNGC 8 cut(s) 259, 268, 319, 322, 325, 328, 331, 334
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 8 cut(s) 259, 268, 319, 322, 325, 328, 331, 334
FspBI CTAG 1 cut(s) 399
GlaI GCGC 1 cut(s) 337
GluI GCNGC 8 cut(s) 259, 268, 319, 322, 325, 328, 331, 334
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 2 cut(s) 597, 633
HapII CCGG 8 cut(s) 13, 30, 250, 506, 598, 622, 634, 646
HhaI GCGC 1 cut(s) 338
Hin1II CATG 3 cut(s) 185, 286, 713
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 4 cut(s) 74, 107, 137, 275
HpaII CCGG 8 cut(s) 13, 30, 250, 506, 598, 622, 634, 646
HphI GGTGA 2 cut(s) 91, 613
Hpy166II GTNNAC 2 cut(s) 379, 452
Hpy188III TCNNGA 2 cut(s) 291, 399
Hpy8I GTNNAC 2 cut(s) 379, 452
HpyAV CCTTC 4 cut(s) 196, 532, 554, 559
HpyCH4III ACNGT 3 cut(s) 212, 610, 690
HpyCH4V TGCA 5 cut(s) 132, 146, 327, 379, 666
HpyF3I CTNAG 3 cut(s) 109, 363, 471
Hsp92II CATG 3 cut(s) 185, 286, 713
HspAI GCGC 1 cut(s) 336
KroI GCCGGC 1 cut(s) 12
KroNI GCCGGC 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 4 cut(s) 60, 124, 550, 706
LmnI GCTCC 1 cut(s) 315
Lsp1109I GCAGC 8 cut(s) 270, 279, 311, 330, 333, 339, 342, 345
LweI GCATC 1 cut(s) 83
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 521, 674
MalI GATC 4 cut(s) 62, 126, 552, 708
MboI GATC 4 cut(s) 60, 124, 550, 706
MboII GAAGA 5 cut(s) 151, 459, 547, 598, 616
MhlI GDGCHC 3 cut(s) 26, 56, 381
MluCI AATT 9 cut(s) 86, 201, 232, 371, 389, 482, 526, 714, 718
MlyI GAGTC 4 cut(s) 68, 101, 131, 269
MmeI TCCRAC 1 cut(s) 717
MnlI CCTC 6 cut(s) 37, 124, 298, 360, 440, 630
MroNI GCCGGC 1 cut(s) 12
MseI TTAA 3 cut(s) 515, 717, 721
MspA1I CMGCKG 2 cut(s) 324, 494
MspI CCGG 8 cut(s) 13, 30, 250, 506, 598, 622, 634, 646
MspR9I CCNGG 1 cut(s) 599
NaeI GCCGGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 599
NdeII GATC 4 cut(s) 60, 124, 550, 706
NgoMIV GCCGGC 1 cut(s) 12
NlaIII CATG 3 cut(s) 185, 286, 713
NlaIV GGNNCC 1 cut(s) 687
NmuCI GTSAC 2 cut(s) 521, 674
NspI RCATGY 1 cut(s) 185
NspV TTCGAA 1 cut(s) 84
PacI TTAATTAA 1 cut(s) 721
PdiI GCCGGC 1 cut(s) 14
PkrI GCNGC 8 cut(s) 260, 269, 320, 323, 326, 329, 332, 335
PleI GAGTC 4 cut(s) 68, 101, 131, 269
PpsI GAGTC 4 cut(s) 68, 101, 131, 269
PshBI ATTAAT 1 cut(s) 717
PspN4I GGNNCC 1 cut(s) 687
PspPI GGNCC 2 cut(s) 616, 660
PstI CTGCAG 3 cut(s) 148, 329, 668
PstNI CAGNNNCTG 1 cut(s) 324
PvuII CAGCTG 2 cut(s) 324, 494
RsaI GTAC 1 cut(s) 504
RsaNI GTAC 1 cut(s) 503
SaqAI TTAA 3 cut(s) 515, 717, 721
SatI GCNGC 8 cut(s) 259, 268, 319, 322, 325, 328, 331, 334
Sau3AI GATC 4 cut(s) 60, 124, 550, 706
Sau96I GGNCC 2 cut(s) 616, 660
SchI GAGTC 4 cut(s) 68, 101, 131, 269
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 3 cut(s) 26, 56, 381
SfaNI GCATC 1 cut(s) 83
SfcI CTRYAG 3 cut(s) 144, 325, 664
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 2 cut(s) 616, 660
SmlI CTYRAG 2 cut(s) 289, 349
SmoI CTYRAG 2 cut(s) 289, 349
Sse9I AATT 9 cut(s) 86, 201, 232, 371, 389, 482, 526, 714, 718
SsiI CCGC 2 cut(s) 10, 619
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 597
TaaI ACNGT 3 cut(s) 212, 610, 690
TaqI TCGA 2 cut(s) 84, 225
TasI AATT 9 cut(s) 86, 201, 232, 371, 389, 482, 526, 714, 718
Tru1I TTAA 3 cut(s) 515, 717, 721
Tru9I TTAA 3 cut(s) 515, 717, 721
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 2 cut(s) 521, 674
TseI GCWGC 8 cut(s) 258, 267, 318, 321, 324, 327, 330, 333
Tsp45I GTSAC 2 cut(s) 521, 674
TspDTI ATGAA 2 cut(s) 396, 475
TspRI CASTG 1 cut(s) 127
VneI GTGCAC 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 616, 660
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 1 cut(s) 86
XbaI TCTAGA 1 cut(s) 398
XceI RCATGY 1 cut(s) 185
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.