Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016672

Physical Location & Seq

Genomic Coordinates Reverse (-)

5180642 .. 5181586

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15353.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTCAAGCAACTGCGGAAGCTGCGACTGTGCTGACAAGACCCAGTGCGTAAAGAAGGGAACCAGCTACACCTTCGACATCGTCGAGACTCAGGAGAGCTACAAGGAGGCCATGATCATGGACGTTGGTGCCGAGGAGAACAACGCAAATTGCAAGTGCAAGTGCGGCTCCTCTTGCAGCTGCGTCAACTGCACTTGCTGCCCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0006873 GO:0006875 GO:0006878 GO:0008150 GO:0008270 GO:0009987 GO:0019725 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_2

Protein Analysis

69

Amino Acids

7.37

Weight (kDa)

4.61

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15353 AT3G15353
fragaria_vesca	FvH4_3g20030
malus_domestica	MD03G1227300.v1.1 MD03G1227500.v1.1 MD11G1246800.v1.1
prunus_persica	Prupe.4G181500_v2.0.a1 Prupe.4G181500_v2.0.a1
pyrus_communis	pycom03g17510
rosa_chinensis	RchiOBHm_Chr5g0033741
rosa_roxburghii	Rroxscaffold_1G00046400
rosa_rugosa	Rorug05G0141700
rosa_samantha	Rh5BG233600
rosa_wichuraiana	Rw5G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AciI	CCGC	2 cut(s)	15, 165
AluBI	AGCT	4 cut(s)	21, 66, 99, 180
AluI	AGCT	4 cut(s)	21, 66, 99, 180
Alw26I	GTCTC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	4 cut(s)	21, 177, 180, 198
BanI	GGYRCC	1 cut(s)	128
BbvI	GCAGC	4 cut(s)	8, 167, 185, 189
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	80
BisI	GCNGC	5 cut(s)	22, 166, 178, 181, 199
BlsI	GCNGC	5 cut(s)	23, 167, 179, 182, 200
BmiI	GGNNCC	3 cut(s)	61, 130, 169
BmrI	ACTGGG	1 cut(s)	37
BmuI	ACTGGG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	2 cut(s)	149, 160
BseXI	GCAGC	4 cut(s)	8, 167, 185, 189
BsgI	GTGCAG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	110
BshNI	GGYRCC	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	2 cut(s)	15, 165
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	3 cut(s)	61, 130, 169
BspT107I	GGYRCC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 165, 174, 189, 198
BstV1I	GCAGC	4 cut(s)	8, 167, 185, 189
BstXI	CCANNNNNNTGG	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	50
CseI	GACGC	1 cut(s)	172
CviAII	CATG	2 cut(s)	112, 118
CviJI	RGCY	6 cut(s)	21, 66, 99, 110, 168, 180
CviKI_1	RGCY	6 cut(s)	21, 66, 99, 110, 168, 180
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
FaeI	CATG	2 cut(s)	115, 121
FaiI	YATR	2 cut(s)	113, 119
FatI	CATG	2 cut(s)	111, 117
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	5 cut(s)	22, 166, 178, 181, 199
Fsp4HI	GCNGC	5 cut(s)	22, 166, 178, 181, 199
GluI	GCNGC	5 cut(s)	22, 166, 178, 181, 199
HaeIII	GGCC	1 cut(s)	110
HgaI	GACGC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	115, 121
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	85, 92
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	49, 82
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	153, 159, 177, 192
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 165, 174, 189, 198
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	115, 121
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	3 cut(s)	56, 76, 77
Lsp1109I	GCAGC	4 cut(s)	8, 167, 185, 189
MaeII	ACGT	1 cut(s)	123
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	3 cut(s)	100, 127, 181
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	21, 165, 174, 189, 198
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	2 cut(s)	115, 121
NlaIV	GGNNCC	3 cut(s)	61, 130, 169
NmeAIII	GCCGAG	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 129
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	5 cut(s)	23, 167, 179, 182, 200
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PspN4I	GGNNCC	3 cut(s)	61, 130, 169
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	116
SatI	GCNGC	5 cut(s)	22, 166, 178, 181, 199
Sau3AI	GATC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	82
SetI	ASST	6 cut(s)	23, 68, 74, 101, 126, 182
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	2 cut(s)	15, 165
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	75, 84
TasI	AATT	1 cut(s)	148
TauI	GCSGC	1 cut(s)	168
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	4 cut(s)	21, 177, 180, 198
TspRI	CASTG	1 cut(s)	50
Tth111I	GACNNNGTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.