Rh5BG233600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
27735616 .. 27736883
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG233600.1

Sequence Viewer

Length: 297 bp
ATGTCTGGAAAGTGCGGCAACTGTGACTGCTCTGACGCTTCCCAGTGCACGATCATAATAACTTTTGATCTCTCTGAAATTGCAGCAAGAAGGGAAACAGTTTGGTCATTGTTGAGACTGAGAAGAGCTACGACACTGTTGTTATGGATGCACCAGCTGCCGAGAACGGCGGAAAATGCAAATGCGGCACCACCTGCTCTTGCATCGACTGCAAATGTGGAAATTAAGTCCCCTATTCACGACCAATGGCTGCCATATAACTATGTGGTGATAAAAATTGTGGAGTCTCGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.98

Weight (kDa)

7.69

Isoelectric Point (pI)

72.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016672)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15353 AT3G15353
fragaria_vesca FvH4_3g20030
malus_domestica MD03G1227300.v1.1 MD03G1227500.v1.1 MD11G1246800.v1.1
prunus_persica Prupe.4G181500_v2.0.a1 Prupe.4G181500_v2.0.a1
pyrus_communis pycom03g17510
rosa_chinensis RchiOBHm_Chr5g0033741
rosa_roxburghii Rroxscaffold_1G00046400
rosa_rugosa Rorug05G0141700
rosa_samantha Rh5BG233600
rosa_wichuraiana Rw5G021580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 187
AciI CCGC 3 cut(s) 15, 170, 185
AluBI AGCT 2 cut(s) 128, 157
AluI AGCT 2 cut(s) 128, 157
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 2 cut(s) 109, 291
Alw44I GTGCAC 1 cut(s) 46
ApaLI GTGCAC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 83, 157, 250
AsuHPI GGTGA 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 3 cut(s) 95, 144, 237
BceAI ACGGC 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 109, 291
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 5 cut(s) 16, 84, 158, 186, 251
BlsI GCNGC 5 cut(s) 17, 85, 159, 187, 252
BmiI GGNNCC 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 2 cut(s) 138, 212
BmuI ACTGGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 3 cut(s) 95, 144, 237
BshNI GGYRCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 50
BslFI GGGAC 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 109, 291
BsmFI GGGAC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 51, 67
BspACI CCGC 3 cut(s) 15, 170, 185
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 202
BspQI GCTCTTC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 43
BssMI GATC 2 cut(s) 51, 67
Bst4CI ACNGT 3 cut(s) 23, 100, 138
Bst6I CTCTTC 1 cut(s) 118
BstAPI GCANNNNNTGC 3 cut(s) 157, 194, 209
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 2 cut(s) 54, 70
BstMAI GTCTC 2 cut(s) 109, 291
BstMBI GATC 2 cut(s) 51, 67
BstMWI GCNNNNNNNGC 5 cut(s) 157, 176, 185, 194, 209
BstSLI GKGCMC 1 cut(s) 50
BstV1I GCAGC 3 cut(s) 95, 144, 237
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 50, 134
BveI ACCTGC 1 cut(s) 202
CseI GACGC 1 cut(s) 44
CviJI RGCY 3 cut(s) 128, 157, 250
CviKI_1 RGCY 3 cut(s) 128, 157, 250
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 53, 69
DpnII GATC 2 cut(s) 51, 67
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
EciI GGCGGA 1 cut(s) 185
FaiI YATR 5 cut(s) 56, 145, 256, 258, 264
FaqI GGGAC 1 cut(s) 214
Fnu4HI GCNGC 5 cut(s) 16, 84, 158, 186, 251
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 5 cut(s) 16, 84, 158, 186, 251
GluI GCNGC 5 cut(s) 16, 84, 158, 186, 251
HgaI GACGC 1 cut(s) 44
HinfI GANTC 1 cut(s) 284
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 34, 76
Hpy188III TCNNGA 2 cut(s) 6, 239
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 3 cut(s) 23, 100, 138
HpyCH4V TGCA 6 cut(s) 48, 83, 151, 179, 203, 212
HpyF10VI GCNNNNNNNGC 5 cut(s) 157, 176, 185, 194, 209
HpyF3I CTNAG 1 cut(s) 119
Kzo9I GATC 2 cut(s) 51, 67
LguI GCTCTTC 1 cut(s) 118
LpnPI CCDG 3 cut(s) 56, 167, 207
Lsp1109I GCAGC 3 cut(s) 95, 144, 237
LweI GCATC 2 cut(s) 138, 212
MaeIII GTNAC 1 cut(s) 23
MalI GATC 2 cut(s) 53, 69
MboI GATC 2 cut(s) 51, 67
MboII GAAGA 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 3 cut(s) 78, 222, 276
MlyI GAGTC 1 cut(s) 293
MseI TTAA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 157
MwoI GCNNNNNNNGC 5 cut(s) 157, 176, 185, 194, 209
NdeII GATC 2 cut(s) 51, 67
NlaIV GGNNCC 1 cut(s) 189
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 23
PaqCI CACCTGC 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 118
PkrI GCNGC 5 cut(s) 17, 85, 159, 187, 252
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 5 cut(s) 16, 84, 158, 186, 251
Sau3AI GATC 2 cut(s) 51, 67
SchI GAGTC 1 cut(s) 293
SduI GDGCHC 1 cut(s) 50
SetI ASST 3 cut(s) 130, 159, 196
SfaNI GCATC 2 cut(s) 138, 212
SgeI CNNG 9 cut(s) 18, 55, 61, 99, 166, 174, 206, 212, 251
Sse9I AATT 3 cut(s) 78, 222, 276
SsiI CCGC 3 cut(s) 15, 170, 185
TaaI ACNGT 3 cut(s) 23, 100, 138
TaqI TCGA 1 cut(s) 206
TasI AATT 3 cut(s) 78, 222, 276
TauI GCSGC 2 cut(s) 18, 188
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 50, 141
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 3 cut(s) 83, 157, 250
Tsp45I GTSAC 1 cut(s) 23
TspRI CASTG 2 cut(s) 50, 141
VneI GTGCAC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.