MD03G1227300.v1.1

Metallothionein-like protein type 3-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
31295027 .. 31296549
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1227300.v1.1.491

Sequence Viewer

Length: 201 bp
ATGTCGGGGAAGTGCGACAACTGCGACTGCGCTGACAGCACCCAGTGCGTGAAGAAGGGAAACAGCTACGACTTGGTGATCGTTGAGACTGAGAACCGCTCCATGGACACCGTCTTCGTGGATGCTCCTGCCGCCGAGCACGACGGAAAGTGCAAGTGTGGCACAGGCTGCTCATGTGTGAGCTGCACCTGTGGTCACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

67

Amino Acids

6.93

Weight (kDa)

4.78

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016672)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15353 AT3G15353
fragaria_vesca FvH4_3g20030
malus_domestica MD03G1227300.v1.1 MD03G1227500.v1.1 MD11G1246800.v1.1
prunus_persica Prupe.4G181500_v2.0.a1 Prupe.4G181500_v2.0.a1
pyrus_communis pycom03g17510
rosa_chinensis RchiOBHm_Chr5g0033741
rosa_roxburghii Rroxscaffold_1G00046400
rosa_rugosa Rorug05G0141700
rosa_samantha Rh5BG233600
rosa_wichuraiana Rw5G021580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 99
AciI CCGC 2 cut(s) 97, 132
AdeI CACNNNGTG 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 103
AluBI AGCT 2 cut(s) 66, 183
AluI AGCT 2 cut(s) 66, 183
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 168, 183
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspLEI GCGC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 155, 170
BcoDI GTCTC 1 cut(s) 80
BisI GCNGC 3 cut(s) 132, 169, 184
BlsI GCNGC 3 cut(s) 133, 170, 185
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 106
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 155, 170
BsgI GTGCAG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 2 cut(s) 97, 132
BspCNI CTCAG 1 cut(s) 82
BsrBI CCGCTC 1 cut(s) 99
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 112
BstAPI GCANNNNNTGC 2 cut(s) 45, 168
BstDEI CTNAG 1 cut(s) 90
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 127
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 6 cut(s) 21, 36, 45, 131, 159, 168
BstV1I GCAGC 2 cut(s) 155, 170
BstV2I GAAGAC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 50
CfoI GCGC 1 cut(s) 32
CviAII CATG 2 cut(s) 103, 174
CviJI RGCY 3 cut(s) 66, 168, 183
CviKI_1 RGCY 3 cut(s) 66, 168, 183
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
DraIII CACNNNGTG 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 106, 177
FaiI YATR 2 cut(s) 104, 175
FatI CATG 2 cut(s) 102, 173
Fnu4HI GCNGC 3 cut(s) 132, 169, 184
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 132, 169, 184
GlaI GCGC 1 cut(s) 31
GluI GCNGC 3 cut(s) 132, 169, 184
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 106, 177
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HphI GGTGA 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 153, 186
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 36, 45, 131, 159, 168
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 2 cut(s) 106, 177
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 2 cut(s) 104, 130
LpnPI CCDG 3 cut(s) 56, 141, 150
Lsp1109I GCAGC 2 cut(s) 155, 170
LweI GCATC 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 80
MbiI CCGCTC 1 cut(s) 99
MboI GATC 1 cut(s) 78
MboII GAAGA 2 cut(s) 64, 106
MhlI GDGCHC 1 cut(s) 141
MwoI GCNNNNNNNGC 6 cut(s) 21, 36, 45, 131, 159, 168
NcoI CCATGG 1 cut(s) 102
NdeII GATC 1 cut(s) 78
NlaIII CATG 2 cut(s) 106, 177
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 194
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 133, 170, 185
PsyI GACNNNGTC 1 cut(s) 110
SatI GCNGC 3 cut(s) 132, 169, 184
Sau3AI GATC 1 cut(s) 78
SduI GDGCHC 1 cut(s) 141
SetI ASST 3 cut(s) 68, 185, 191
SfaNI GCATC 1 cut(s) 112
SsiI CCGC 2 cut(s) 97, 132
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 112
TauI GCSGC 1 cut(s) 134
TscAI CASTG 1 cut(s) 50
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 168, 183
Tsp45I GTSAC 1 cut(s) 194
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 50
Tth111I GACNNNGTC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.