FvH4_3g20030

Metallothionein-like protein type 3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
13176492 .. 13177331
840 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20030.t1

Sequence Viewer

Length: 192 bp
ATGTCTGGAAAGTGCGACAGCTGTGACTGCTCTGACGTTTCCCAGTGCACGAAGAAGGGAAACAGCTTGGTCATTGTTGAGACCGAGAAGAGCTACGACACTGTTGTCATGGATGCACCAACCGCCGAGAACGGCGGAAAGTGCAAATGCGGCACCACCTGCTCTTGCATCGACTGCAAGTGTGGACATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

6.58

Weight (kDa)

5.07

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016672)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15353 AT3G15353
fragaria_vesca FvH4_3g20030
malus_domestica MD03G1227300.v1.1 MD03G1227500.v1.1 MD11G1246800.v1.1
prunus_persica Prupe.4G181500_v2.0.a1 Prupe.4G181500_v2.0.a1
pyrus_communis pycom03g17510
rosa_chinensis RchiOBHm_Chr5g0033741
rosa_roxburghii Rroxscaffold_1G00046400
rosa_rugosa Rorug05G0141700
rosa_samantha Rh5BG233600
rosa_wichuraiana Rw5G021580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
AasI GACNNNNNNGTC 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 3 cut(s) 123, 135, 150
AluBI AGCT 3 cut(s) 21, 66, 93
AluI AGCT 3 cut(s) 21, 66, 93
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 74
Alw44I GTGCAC 1 cut(s) 46
ApaLI GTGCAC 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 167
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 2 cut(s) 103, 177
BmuI ACTGGG 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 74
Bso31I GGTCTC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 50
BspACI CCGC 3 cut(s) 123, 135, 150
BspLI GGNNCC 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 83
BstAPI GCANNNNNTGC 2 cut(s) 159, 174
BstF5I GGATG 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 74
BstMWI GCNNNNNNNGC 6 cut(s) 27, 122, 141, 150, 159, 174
BstSLI GKGCMC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 50, 99
BveI ACCTGC 1 cut(s) 167
CviAII CATG 1 cut(s) 109
CviJI RGCY 3 cut(s) 21, 66, 93
CviKI_1 RGCY 3 cut(s) 21, 66, 93
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 74
FaeI CATG 1 cut(s) 112
FaiI YATR 1 cut(s) 110
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 48, 185
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 2 cut(s) 48, 185
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 5 cut(s) 48, 116, 144, 168, 177
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 122, 141, 150, 159, 174
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 112
LguI GCTCTTC 1 cut(s) 83
LpnPI CCDG 2 cut(s) 56, 172
LweI GCATC 2 cut(s) 103, 177
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 23
MboII GAAGA 2 cut(s) 64, 100
MhlI GDGCHC 1 cut(s) 50
MseI TTAA 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 21
MwoI GCNNNNNNNGC 6 cut(s) 27, 122, 141, 150, 159, 174
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 23
PaqCI CACCTGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 190
SatI GCNGC 1 cut(s) 151
SduI GDGCHC 1 cut(s) 50
SetI ASST 5 cut(s) 23, 39, 68, 95, 161
SfaNI GCATC 2 cut(s) 103, 177
SgeI CNNG 9 cut(s) 18, 55, 61, 79, 97, 121, 139, 171, 177
SsiI CCGC 3 cut(s) 123, 135, 150
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 171
TaqII GACCGA 1 cut(s) 98
TauI GCSGC 1 cut(s) 153
Tru1I TTAA 1 cut(s) 190
Tru9I TTAA 1 cut(s) 190
TscAI CASTG 2 cut(s) 50, 106
TseFI GTSAC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 23
TspRI CASTG 2 cut(s) 50, 106
VneI GTGCAC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.