Rw5G021580

Metallothionein-like protein type 3-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
29159495 .. 29161164
1670 bp
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UTR
Exon/CDS
Intron
Rw5G021580.1

Sequence Viewer

Length: 192 bp
ATGTCTGGAAAGTGCGGCAACTGTGACTGCTCTGACGCTTCCCAGTGCACCAAGAAGGGAAACAGTTTGGTCATTGTTGAGACTGAGAAGAGCTACGACACTGTTGTTATGGATGCACCAGCTGCCGAGAACGGCGGAAAATGCAAATGCGGCACCACCTGCTCTTGCATCGACTGCAAATGTGGAAATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

6.46

Weight (kDa)

5.09

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016672)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15353 AT3G15353
fragaria_vesca FvH4_3g20030
malus_domestica MD03G1227300.v1.1 MD03G1227500.v1.1 MD11G1246800.v1.1
prunus_persica Prupe.4G181500_v2.0.a1 Prupe.4G181500_v2.0.a1
pyrus_communis pycom03g17510
rosa_chinensis RchiOBHm_Chr5g0033741
rosa_roxburghii Rroxscaffold_1G00046400
rosa_rugosa Rorug05G0141700
rosa_samantha Rh5BG233600
rosa_wichuraiana Rw5G021580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 3 cut(s) 15, 135, 150
AluBI AGCT 2 cut(s) 93, 122
AluI AGCT 2 cut(s) 93, 122
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 74
Alw44I GTGCAC 1 cut(s) 46
ApaLI GTGCAC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 167
BisI GCNGC 3 cut(s) 16, 123, 151
BlsI GCNGC 3 cut(s) 17, 124, 152
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 2 cut(s) 103, 177
BmuI ACTGGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 50
BspACI CCGC 3 cut(s) 15, 135, 150
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 152
BsrI ACTGG 1 cut(s) 43
Bst4CI ACNGT 3 cut(s) 23, 65, 103
Bst6I CTCTTC 1 cut(s) 83
BstAPI GCANNNNNTGC 3 cut(s) 122, 159, 174
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 74
BstMWI GCNNNNNNNGC 5 cut(s) 122, 141, 150, 159, 174
BstSLI GKGCMC 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 50, 99
BveI ACCTGC 1 cut(s) 167
CseI GACGC 1 cut(s) 44
CviJI RGCY 2 cut(s) 93, 122
CviKI_1 RGCY 2 cut(s) 93, 122
DdeI CTNAG 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 150
FaiI YATR 1 cut(s) 110
Fnu4HI GCNGC 3 cut(s) 16, 123, 151
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 3 cut(s) 16, 123, 151
GluI GCNGC 3 cut(s) 16, 123, 151
HgaI GACGC 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 3 cut(s) 23, 65, 103
HpyCH4V TGCA 5 cut(s) 48, 116, 144, 168, 177
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 141, 150, 159, 174
HpyF3I CTNAG 1 cut(s) 84
LguI GCTCTTC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 56, 132, 172
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 2 cut(s) 103, 177
MaeIII GTNAC 1 cut(s) 23
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 1 cut(s) 187
MseI TTAA 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 122
MwoI GCNNNNNNNGC 5 cut(s) 122, 141, 150, 159, 174
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 23
PaqCI CACCTGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 17, 124, 152
PspN4I GGNNCC 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 190
SatI GCNGC 3 cut(s) 16, 123, 151
SduI GDGCHC 1 cut(s) 50
SetI ASST 3 cut(s) 95, 124, 161
SfaNI GCATC 2 cut(s) 103, 177
SgeI CNNG 7 cut(s) 18, 55, 64, 131, 139, 171, 177
Sse9I AATT 1 cut(s) 187
SsiI CCGC 3 cut(s) 15, 135, 150
TaaI ACNGT 3 cut(s) 23, 65, 103
TaqI TCGA 1 cut(s) 171
TasI AATT 1 cut(s) 187
TauI GCSGC 2 cut(s) 18, 153
Tru1I TTAA 1 cut(s) 190
Tru9I TTAA 1 cut(s) 190
TscAI CASTG 2 cut(s) 50, 106
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 23
TspRI CASTG 2 cut(s) 50, 106
VneI GTGCAC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.