Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016672

Physical Location & Seq

Genomic Coordinates Forward (+)

18641512 .. 18642710

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTGTGAGGATAGCAGACCAAGCCCTCCATTATCAAGATTCCTTTGGACGTTTCTCGGGAGACGTGTGCTTCCCTCATGCCTCGAGGCCCCCACCTACACCTTACTGTCCACTGTAGGCCCCACCTCCCAGCAACTAGCACCCTTGCTCCTGCCCTCTCCGTGCATCTATAAATTCAGGACGATAGTGCAGATTGGAGATACAGCAAGCAAAACCCTAAAACACACTTCAGTTCCAAGTTCTAAGTTCATCTGCAACATGTCGGGCAAGTGCGACAACTGCGACTGTGCTGACAGCTCCCAGTGCACGAAGAAGCGAAACAGCTACGACTTGGTGATCGTTGAGACTGAGAACCGCTCCATGGACACCGTCGTCGTGGATGCTCCTGCCGCCGAGAACGACGGAAAGTGCAAGTGTGGCACAGTCTGCTTATGTGTGAACTGCACCTGTGGTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallothio_2

Protein Analysis

153

Amino Acids

16.53

Weight (kDa)

7.9

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15353 AT3G15353
fragaria_vesca	FvH4_3g20030
malus_domestica	MD03G1227300.v1.1 MD03G1227500.v1.1 MD11G1246800.v1.1
prunus_persica	Prupe.4G181500_v2.0.a1 Prupe.4G181500_v2.0.a1
pyrus_communis	pycom03g17510
rosa_chinensis	RchiOBHm_Chr5g0033741
rosa_roxburghii	Rroxscaffold_1G00046400
rosa_rugosa	Rorug05G0141700
rosa_samantha	Rh5BG233600
rosa_wichuraiana	Rw5G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AbsI	CCTCGAGG	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	357
AciI	CCGC	2 cut(s)	355, 390
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	361
AflIII	ACRYGT	2 cut(s)	64, 258
AjiI	CACGTC	1 cut(s)	65
AluBI	AGCT	2 cut(s)	297, 324
AluI	AGCT	2 cut(s)	297, 324
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	2 cut(s)	55, 338
Alw44I	GTGCAC	1 cut(s)	304
Ama87I	CYCGRG	2 cut(s)	56, 83
AoxI	GGCC	2 cut(s)	87, 118
ApaLI	GTGCAC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	88, 119
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	2 cut(s)	56, 83
BaeGI	GKGCMC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	308
BcoDI	GTCTC	2 cut(s)	55, 338
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
BmeT110I	CYCGRG	2 cut(s)	56, 83
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	88, 119
BmiI	GGNNCC	2 cut(s)	90, 121
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	2 cut(s)	174, 370
BmuI	ACTGGG	1 cut(s)	295
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BsaJI	CCNNGG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	308
BseYI	CCCAGC	1 cut(s)	129
BsgI	GTGCAG	2 cut(s)	209, 427
BshFI	GGCC	2 cut(s)	89, 120
BsiHKAI	GWGCWC	1 cut(s)	308
BsiHKCI	CYCGRG	2 cut(s)	56, 83
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	55, 338
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	89, 120
BsoBI	CYCGRG	2 cut(s)	56, 83
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	2 cut(s)	355, 390
BspANI	GGCC	2 cut(s)	89, 120
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	90, 121
BsrBI	CCGCTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	360
Bst4CI	ACNGT	5 cut(s)	108, 115, 287, 370, 424
BstAPI	GCANNNNNTGC	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	243, 348
BstDSI	CCRYGG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	2 cut(s)	55, 338
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 279, 303, 389, 417, 426
BstNSI	RCATGY	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	89, 120
BtgI	CCRYGG	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	111, 308
Cac8I	GCNNGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	88, 119
CviAII	CATG	3 cut(s)	78, 259, 361
CviJI	RGCY	5 cut(s)	24, 89, 120, 297, 324
CviKI_1	RGCY	5 cut(s)	24, 89, 120, 297, 324
DdeI	CTNAG	2 cut(s)	243, 348
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	2 cut(s)	56, 83
EcoO109I	RGGNCCY	2 cut(s)	88, 119
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	3 cut(s)	81, 262, 364
FaiI	YATR	5 cut(s)	79, 171, 260, 362, 433
FatI	CATG	3 cut(s)	77, 258, 360
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	390
GsaI	CCCAGC	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	89, 120
Hin1II	CATG	3 cut(s)	81, 262, 364
HinfI	GANTC	1 cut(s)	39
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	3 cut(s)	111, 306, 439
Hpy188III	TCNNGA	3 cut(s)	36, 58, 178
Hpy8I	GTNNAC	3 cut(s)	111, 306, 439
Hpy99I	CGWCG	3 cut(s)	374, 377, 404
HpyCH4III	ACNGT	5 cut(s)	108, 115, 287, 370, 424
HpyCH4IV	ACGT	2 cut(s)	50, 64
HpyCH4V	TGCA	6 cut(s)	165, 190, 255, 306, 411, 444
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 279, 303, 389, 417, 426
HpyF3I	CTNAG	2 cut(s)	243, 348
HpySE526I	ACGT	2 cut(s)	50, 64
Hsp92II	CATG	3 cut(s)	81, 262, 364
Kzo9I	GATC	1 cut(s)	336
LmnI	GCTCC	4 cut(s)	153, 302, 362, 388
LpnPI	CCDG	5 cut(s)	143, 163, 164, 314, 399
LweI	GCATC	2 cut(s)	174, 370
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	2 cut(s)	50, 64
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	1 cut(s)	338
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	1 cut(s)	173
MnlI	CCTC	6 cut(s)	36, 79, 85, 92, 136, 166
MwoI	GCNNNNNNNGC	6 cut(s)	21, 279, 303, 389, 417, 426
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	3 cut(s)	81, 262, 364
NlaIV	GGNNCC	2 cut(s)	90, 121
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	452
NspI	RCATGY	1 cut(s)	262
PaeR7I	CTCGAG	1 cut(s)	83
PciI	ACATGT	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	391
PscI	ACATGT	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	90, 121
PspPI	GGNCC	2 cut(s)	88, 119
PspXI	VCTCGAGB	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	368
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	2 cut(s)	88, 119
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	8 cut(s)	53, 67, 98, 104, 128, 299, 326, 449
SfaNI	GCATC	2 cut(s)	174, 370
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	2 cut(s)	355, 390
SspMI	CTAG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	5 cut(s)	108, 115, 287, 370, 424
TaiI	ACGT	2 cut(s)	53, 67
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	173
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	39
TscAI	CASTG	2 cut(s)	118, 308
TseFI	GTSAC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	238
TspGWI	ACGGA	2 cut(s)	150, 417
TspRI	CASTG	2 cut(s)	118, 308
Tth111I	GACNNNGTC	1 cut(s)	368
VneI	GTGCAC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	83
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.