AT3G15370

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014349
Physical Location & Seq
Forward (+)
5190554 .. 5192197
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15370.2

Sequence Viewer

Length: 759 bp
ATGGATATGAAGGGAACATACTTAGTAACGGTTATTCTCTTGGTTAGTACGTTAAGTGTGGGGATGTGTTCTAACGGTTGGATAAGAGCTCATGCAACGTATTATGGTGTCAATGATAGCCCTGCTTCACTTGGAGGAGCTTGTGGGTATGACAATCCGTACCACGCCGGATTCGGAGCACACACGGCGGCGCTAAGCGGTGAGCTATTCAGAAGCGGTGAGTCATGCGGTGGGTGCTACCAGGTGAGGTGCGACTTTCCGGCGGATCCTAAGTGGTGTCTCCGAGGAGCCGCCGTGACGGTGACGGCTACAAACTTTTGCCCAACGAATAACAATAATGGTTGGTGCAATCTCCCTCGCCATCACTTTGACATGTCCTCCCCCGCTTTCTTCCGCATTGCCCGTCGCGGCAATGAAGGCATCGTCCCCGTCTTCTATCGCCGGGTGGGATGCAAAAGAAGAGGAGGCGTGAGGTTCACGATGAGAGGGCAAGGTAACTTCAATATGGTAATGATCTCAAACGTTGGTGGTGGCGGCTCGGTGAGATCAGTAGCGGTGAGAGGCTCAAAGGGAAAGACTTGGCTTCAGATGACCCGTAATTGGGGTGCCAACTGGCAGAGCTCCGGTGATCTCCGGGGACAGAGACTCTCCTTCAAAGTTACTCTGACGGACAGCAAAACGCAGACATTTTTGAACGTTGTCCCTTCTTCTTGGTGGTTTGGCCAAACCTTCTCTTCTCGAGGAAGACAATTCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

252

Amino Acids

27.62

Weight (kDa)

10.06

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 76 - 150 5.6e-07 EXPB1-like domain 1
DPBB_1 PF03330 92 - 176 1.9e-19 Lytic transglycolase
Expansin_C PF01357 187 - 265 2.4e-25 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15370 AT3G15370
fragaria_vesca FvH4_3g20110
malus_domestica MD03G1225900.v1.1 MD11G1245100.v1.1 MD11G1245500.v1.1
prunus_persica Prupe.4G183400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033911
rosa_laevigata RLG00000033510
rosa_multiflora Rmu_sc0001150.1_g000013 Rmu_sc0016967.1_g000001
rosa_rugosa Rorug05G0143300.1
rosa_samantha Rh5AG234100 Rh5BG234700 Rh5CG265000 Rh5DG241600
rosa_wichuraiana Rw5G021520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 605
AccII CGCG 1 cut(s) 408
AclI AACGTT 2 cut(s) 522, 696
AclWI GGATC 2 cut(s) 260, 273
AcoI YGGCCR 1 cut(s) 721
AcuI CTGAAG 1 cut(s) 569
AfaI GTAC 2 cut(s) 49, 161
AfiI CCNNNNNNNGG 2 cut(s) 600, 601
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 3 cut(s) 502, 655, 694
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 4 cut(s) 89, 140, 205, 621
AluI AGCT 4 cut(s) 89, 140, 205, 621
Alw21I GWGCWC 3 cut(s) 91, 181, 623
Alw26I GTCTC 2 cut(s) 284, 637
AlwI GGATC 2 cut(s) 260, 273
Ama87I CYCGRG 1 cut(s) 738
AoxI GGCC 1 cut(s) 721
AspLEI GCGC 1 cut(s) 193
AsuC2I CCSGG 2 cut(s) 443, 635
AsuHPI GGTGA 7 cut(s) 212, 230, 256, 313, 553, 568, 638
AvaI CYCGRG 1 cut(s) 738
BalI TGGCCA 1 cut(s) 723
BamHI GGATCC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 605
BanII GRGCYC 2 cut(s) 91, 623
BarI GAAGNNNNNNTAC 1 cut(s) 34
BbsI GAAGAC 2 cut(s) 424, 751
Bbv12I GWGCWC 3 cut(s) 91, 181, 623
BccI CCATC 1 cut(s) 369
BceAI ACGGC 3 cut(s) 201, 278, 321
BciT130I CCWGG 1 cut(s) 242
BcnI CCSGG 2 cut(s) 443, 635
BcoDI GTCTC 2 cut(s) 284, 637
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 4 cut(s) 189, 291, 409, 535
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 4 cut(s) 190, 292, 410, 536
Bme1390I CCNGG 3 cut(s) 242, 443, 635
BmeT110I CYCGRG 1 cut(s) 738
BmiI GGNNCC 3 cut(s) 267, 289, 607
BmrFI CCNGG 3 cut(s) 242, 443, 635
BmsI GCATC 2 cut(s) 429, 440
BpiI GAAGAC 2 cut(s) 424, 751
Bpu1102I GCTNAGC 1 cut(s) 194
BpuMI CCSGG 2 cut(s) 443, 635
BsaJI CCNNGG 2 cut(s) 283, 634
BsaWI WCCGGW 1 cut(s) 623
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 362, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 600, 601
Bse1I ACTGG 1 cut(s) 617
Bse3DI GCAATG 2 cut(s) 396, 418
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 283, 634
BseGI GGATG 2 cut(s) 69, 455
BseLI CCNNNNNNNGG 2 cut(s) 600, 601
BseMI GCAATG 2 cut(s) 396, 418
BseNI ACTGG 1 cut(s) 617
BseRI GAGGAG 3 cut(s) 150, 300, 477
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 1 cut(s) 723
BshNI GGYRCC 1 cut(s) 605
BsiHKAI GWGCWC 3 cut(s) 91, 181, 623
BsiHKCI CYCGRG 1 cut(s) 738
BsiSI CCGG 5 cut(s) 168, 260, 442, 624, 634
BslFI GGGAC 3 cut(s) 410, 651, 686
BslI CCNNNNNNNGG 2 cut(s) 600, 601
BsmAI GTCTC 2 cut(s) 284, 637
BsmFI GGGAC 3 cut(s) 410, 651, 686
BsnI GGCC 1 cut(s) 723
BsoBI CYCGRG 1 cut(s) 738
Bsp1286I GDGCHC 3 cut(s) 91, 181, 623
Bsp143I GATC 4 cut(s) 265, 513, 545, 628
Bsp1720I GCTNAGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 723
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 3 cut(s) 267, 289, 607
BspPI GGATC 2 cut(s) 260, 273
BspT107I GGYRCC 1 cut(s) 605
BsrDI GCAATG 2 cut(s) 396, 418
BsrI ACTGG 1 cut(s) 617
BssECI CCNNGG 2 cut(s) 283, 634
BssMI GATC 4 cut(s) 265, 513, 545, 628
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 31, 77, 301
Bst6I CTCTTC 2 cut(s) 454, 739
BstDEI CTNAG 3 cut(s) 22, 194, 270
BstF5I GGATG 2 cut(s) 69, 455
BstFNI CGCG 1 cut(s) 408
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 4 cut(s) 268, 516, 548, 631
BstMAI GTCTC 2 cut(s) 284, 637
BstMBI GATC 4 cut(s) 265, 513, 545, 628
BstMWI GCNNNNNNNGC 3 cut(s) 185, 234, 417
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 3 cut(s) 240, 441, 633
BstUI CGCG 1 cut(s) 408
BstV2I GAAGAC 2 cut(s) 424, 751
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 1 cut(s) 723
BtsCI GGATG 2 cut(s) 69, 455
CfoI GCGC 1 cut(s) 193
CsiI ACCWGGT 1 cut(s) 240
Csp6I GTAC 2 cut(s) 48, 160
CviAII CATG 3 cut(s) 92, 225, 373
CviQI GTAC 2 cut(s) 48, 160
DdeI CTNAG 3 cut(s) 22, 194, 270
DpnI GATC 4 cut(s) 267, 515, 547, 630
DpnII GATC 4 cut(s) 265, 513, 545, 628
EaeI YGGCCR 1 cut(s) 721
Eam1104I CTCTTC 2 cut(s) 454, 739
EarI CTCTTC 2 cut(s) 454, 739
EciI GGCGGA 1 cut(s) 278
Ecl136II GAGCTC 2 cut(s) 89, 621
Eco24I GRGCYC 2 cut(s) 91, 623
Eco53kI GAGCTC 2 cut(s) 89, 621
Eco57I CTGAAG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 738
EcoICRI GAGCTC 2 cut(s) 89, 621
EcoRII CCWGG 1 cut(s) 240
EcoT38I GRGCYC 2 cut(s) 91, 623
FaeI CATG 3 cut(s) 95, 228, 376
FaiI YATR 8 cut(s) 8, 19, 93, 105, 150, 226, 374, 506
FaqI GGGAC 3 cut(s) 410, 651, 686
FatI CATG 3 cut(s) 91, 224, 372
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 4 cut(s) 189, 291, 409, 535
FokI GGATG 2 cut(s) 76, 462
FriOI GRGCYC 2 cut(s) 91, 623
Fsp4HI GCNGC 4 cut(s) 189, 291, 409, 535
GlaI GCGC 1 cut(s) 192
GluI GCNGC 4 cut(s) 189, 291, 409, 535
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 1 cut(s) 723
HapII CCGG 5 cut(s) 168, 260, 442, 624, 634
HhaI GCGC 1 cut(s) 193
Hin1II CATG 3 cut(s) 95, 228, 376
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 3 cut(s) 171, 221, 645
HpaII CCGG 5 cut(s) 168, 260, 442, 624, 634
HphI GGTGA 7 cut(s) 212, 230, 256, 313, 553, 568, 638
Hpy166II GTNNAC 1 cut(s) 477
Hpy188I TCNGA 5 cut(s) 176, 212, 284, 588, 666
Hpy188III TCNNGA 2 cut(s) 478, 738
Hpy8I GTNNAC 1 cut(s) 477
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 5 cut(s) 4, 410, 661, 714, 739
HpyCH4III ACNGT 3 cut(s) 31, 77, 301
HpyCH4IV ACGT 4 cut(s) 50, 98, 522, 696
HpyCH4V TGCA 3 cut(s) 95, 348, 453
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 234, 417
HpyF3I CTNAG 3 cut(s) 22, 194, 270
HpySE526I ACGT 4 cut(s) 50, 98, 522, 696
Hsp92II CATG 3 cut(s) 95, 228, 376
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 4 cut(s) 265, 513, 545, 628
LmnI GCTCC 4 cut(s) 137, 176, 287, 626
LpnPI CCDG 9 cut(s) 135, 181, 227, 254, 273, 455, 598, 637, 647
LweI GCATC 2 cut(s) 429, 440
MabI ACCWGGT 1 cut(s) 240
MaeII ACGT 4 cut(s) 50, 98, 522, 696
MaeIII GTNAC 5 cut(s) 25, 295, 301, 494, 658
MalI GATC 4 cut(s) 267, 515, 547, 630
MboI GATC 4 cut(s) 265, 513, 545, 628
MboII GAAGA 6 cut(s) 382, 424, 471, 699, 726, 756
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 3 cut(s) 91, 181, 623
MlsI TGGCCA 1 cut(s) 723
MluCI AATT 2 cut(s) 598, 749
MluNI TGGCCA 1 cut(s) 723
MlyI GAGTC 2 cut(s) 230, 639
MmeI TCCRAC 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 723
MscI TGGCCA 1 cut(s) 723
MseI TTAA 2 cut(s) 53, 757
Msp20I TGGCCA 1 cut(s) 723
MspI CCGG 5 cut(s) 168, 260, 442, 624, 634
MspR9I CCNGG 3 cut(s) 242, 443, 635
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 3 cut(s) 185, 234, 417
NciI CCSGG 2 cut(s) 443, 635
NdeII GATC 4 cut(s) 265, 513, 545, 628
NlaIII CATG 3 cut(s) 95, 228, 376
NlaIV GGNNCC 3 cut(s) 267, 289, 607
NmuCI GTSAC 2 cut(s) 295, 301
NspI RCATGY 1 cut(s) 376
PaeR7I CTCGAG 1 cut(s) 738
PciI ACATGT 1 cut(s) 372
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 4 cut(s) 190, 292, 410, 536
PleI GAGTC 2 cut(s) 229, 639
PpsI GAGTC 2 cut(s) 229, 639
PscI ACATGT 1 cut(s) 372
Psp124BI GAGCTC 2 cut(s) 91, 623
Psp1406I AACGTT 2 cut(s) 522, 696
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 3 cut(s) 267, 289, 607
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 2 cut(s) 49, 161
RsaNI GTAC 2 cut(s) 48, 160
SacI GAGCTC 2 cut(s) 91, 623
SaqAI TTAA 2 cut(s) 53, 757
SatI GCNGC 4 cut(s) 189, 291, 409, 535
Sau3AI GATC 4 cut(s) 265, 513, 545, 628
SchI GAGTC 2 cut(s) 230, 639
ScrFI CCNGG 3 cut(s) 242, 443, 635
SduI GDGCHC 3 cut(s) 91, 181, 623
SexAI ACCWGGT 1 cut(s) 240
SfaNI GCATC 2 cut(s) 429, 440
Sfr274I CTCGAG 1 cut(s) 738
SlaI CTCGAG 1 cut(s) 738
SmlI CTYRAG 1 cut(s) 738
SmoI CTYRAG 1 cut(s) 738
Sse9I AATT 2 cut(s) 598, 749
SstI GAGCTC 2 cut(s) 91, 623
StyD4I CCNGG 3 cut(s) 240, 441, 633
TaaI ACNGT 3 cut(s) 31, 77, 301
TaiI ACGT 4 cut(s) 53, 101, 525, 699
TaqI TCGA 1 cut(s) 739
TasI AATT 2 cut(s) 598, 749
TauI GCSGC 4 cut(s) 191, 293, 411, 537
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 2 cut(s) 53, 757
Tru9I TTAA 2 cut(s) 53, 757
TseFI GTSAC 2 cut(s) 295, 301
Tsp45I GTSAC 2 cut(s) 295, 301
TspDTI ATGAA 2 cut(s) 23, 429
TspGWI ACGGA 2 cut(s) 147, 683
XceI RCATGY 1 cut(s) 376
XhoI CTCGAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.