MD11G1245100.v1.1

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014349
Physical Location & Seq
Forward (+)
35596722 .. 35598642
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1245100.v1.1.491

Sequence Viewer

Length: 750 bp
ATGGTGCCTCTTTTCTGGCATCTTTTCTTGTTCGTTTGTATAGTTTTGGAGGGCATTATCCTCACCAATGTTGAAGCCAATGGATGGCTTAGTGGTCATGCAACTTTCTACGGGACCAACCAAGACCCAGCCACCCTTGGTGGTGCTTGTGGTTACGAAAGTACCATCCATTCGGGGTTTGGAGTGAACACAGCTGCCGTGAGTAGCACACTTTTCAGAGGAGGTGAGGCCTGTGGGGCGTGTTACCAAGTAATGTGTAACTACAACACAGATCCAAAGTGGTGCCTTCGAGGTCGTTCTGTGACGGTTTCCGCCACCAATTTCTGCCCCCCAAACAACAACGGAGGGTGGTGCAATTTTCCTCACCAACACTTCGACATGTCCATGCCTGCTTTTCTTCGCATTGCCCGACAAGGCAATGAAGGCATAGTTCCTGTCATTTACAGAAGAAGAGGCGGAGTCCGATTCACCTTGAAGGGACAGTCGAGCTTCAACATGGTGATGATCTCCAACGTCGGCGGAAGCGGGGACGTGAAGGCTGCATGGATTAGGGGGTCGAGGATGAGAAGAGGAACGTGGCTGGCCATGCACAGGAATTGGGGGGCAAATTGGCAAAGCAGCGTTGACCTTCGAAACCAGAGACTCTCTTTTAAGCTCACACTGGTTGATGGAAGAGCACTTGTATTTTCTAATGTGGTTCCATCCACTTGGGGATTTGGACAAACATTTTCATCCCTCAACCAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

250

Amino Acids

27.5

Weight (kDa)

9.6

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 35 - 121 2.4e-08 EXPB1-like domain 1
DPBB_1 PF03330 64 - 148 8.3e-21 Lytic transglycolase
Expansin_C PF01357 154 - 234 2.6e-25 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15370 AT3G15370
fragaria_vesca FvH4_3g20110
malus_domestica MD03G1225900.v1.1 MD11G1245100.v1.1 MD11G1245500.v1.1
prunus_persica Prupe.4G183400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033911
rosa_laevigata RLG00000033510
rosa_multiflora Rmu_sc0001150.1_g000013 Rmu_sc0016967.1_g000001
rosa_rugosa Rorug05G0143300.1
rosa_samantha Rh5AG234100 Rh5BG234700 Rh5CG265000 Rh5DG241600
rosa_wichuraiana Rw5G021520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 282
AccB7I CCANNNNNTGG 1 cut(s) 84
AciI CCGC 4 cut(s) 312, 456, 519, 525
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 582
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 84, 591
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 3 cut(s) 74, 475, 493
AjiI CACGTC 1 cut(s) 532
AluBI AGCT 3 cut(s) 194, 489, 655
AluI AGCT 3 cut(s) 194, 489, 655
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 1 cut(s) 634
AlwI GGATC 1 cut(s) 266
AoxI GGCC 2 cut(s) 228, 582
ApeKI GCWGC 3 cut(s) 194, 539, 618
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 5 cut(s) 55, 236, 356, 460, 511
AsuII TTCGAA 1 cut(s) 631
AvaII GGWCC 1 cut(s) 114
BaeI ACNNNNGTAYC 2 cut(s) 145, 178
BalI TGGCCA 1 cut(s) 584
BanI GGYRCC 2 cut(s) 4, 282
Bbv12I GWGCWC 1 cut(s) 679
BbvI GCAGC 3 cut(s) 181, 526, 630
BccI CCATC 4 cut(s) 78, 173, 662, 709
BceAI ACGGC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 634
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 3 cut(s) 195, 540, 619
BlsI GCNGC 3 cut(s) 196, 541, 620
Bme18I GGWCC 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 4 cut(s) 6, 115, 284, 699
BmsI GCATC 1 cut(s) 28
Bpu14I TTCGAA 1 cut(s) 631
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 591
Bse1I ACTGG 2 cut(s) 666, 742
Bse3DI GCAATG 2 cut(s) 402, 424
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 5 cut(s) 89, 165, 567, 701, 731
BseLI CCNNNNNNNGG 2 cut(s) 84, 591
BseMI GCAATG 2 cut(s) 402, 424
BseNI ACTGG 2 cut(s) 666, 742
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 3 cut(s) 181, 526, 630
BseYI CCCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 230, 584
BshNI GGYRCC 2 cut(s) 4, 282
BsiHKAI GWGCWC 1 cut(s) 679
BslFI GGGAC 3 cut(s) 127, 492, 542
BslI CCNNNNNNNGG 2 cut(s) 84, 591
BsmAI GTCTC 1 cut(s) 634
BsmFI GGGAC 3 cut(s) 127, 492, 542
BsnI GGCC 2 cut(s) 230, 584
Bsp119I TTCGAA 1 cut(s) 631
Bsp1286I GDGCHC 1 cut(s) 679
Bsp143I GATC 2 cut(s) 271, 504
BspACI CCGC 4 cut(s) 312, 456, 519, 525
BspANI GGCC 2 cut(s) 230, 584
BspLI GGNNCC 4 cut(s) 6, 115, 284, 699
BspPI GGATC 1 cut(s) 266
BspQI GCTCTTC 1 cut(s) 667
BspT104I TTCGAA 1 cut(s) 631
BspT107I GGYRCC 2 cut(s) 4, 282
BsrDI GCAATG 2 cut(s) 402, 424
BsrI ACTGG 2 cut(s) 666, 742
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 271, 504
BssT1I CCWWGG 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 307, 483
Bst6I CTCTTC 3 cut(s) 445, 562, 667
BstBI TTCGAA 1 cut(s) 631
BstC8I GCNNGC 2 cut(s) 390, 582
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 5 cut(s) 89, 165, 567, 701, 731
BstKTI GATC 2 cut(s) 274, 507
BstMAI GTCTC 1 cut(s) 634
BstMBI GATC 2 cut(s) 271, 504
BstMWI GCNNNNNNNGC 3 cut(s) 236, 423, 586
BstNSI RCATGY 1 cut(s) 382
BstV1I GCAGC 3 cut(s) 181, 526, 630
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 708
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 2 cut(s) 230, 584
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 5 cut(s) 89, 165, 567, 701, 731
BtsIMutI CAGTG 1 cut(s) 659
Cac8I GCNNGC 2 cut(s) 390, 582
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 162
CviAII CATG 6 cut(s) 98, 379, 385, 496, 543, 586
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 89
DpnI GATC 2 cut(s) 273, 506
DpnII GATC 2 cut(s) 271, 504
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 3 cut(s) 445, 562, 667
EarI CTCTTC 3 cut(s) 445, 562, 667
EciI GGCGGA 3 cut(s) 301, 471, 534
Eco130I CCWWGG 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 6 cut(s) 101, 382, 388, 499, 546, 589
FaiI YATR 8 cut(s) 41, 99, 380, 386, 428, 497, 544, 587
FaqI GGGAC 3 cut(s) 127, 492, 542
FatI CATG 6 cut(s) 97, 378, 384, 495, 542, 585
FauI CCCGC 1 cut(s) 518
Fnu4HI GCNGC 3 cut(s) 195, 540, 619
FokI GGATG 5 cut(s) 96, 152, 574, 688, 718
Fsp4HI GCNGC 3 cut(s) 195, 540, 619
GluI GCNGC 3 cut(s) 195, 540, 619
GsaI CCCAGC 1 cut(s) 131
HaeIII GGCC 2 cut(s) 230, 584
Hin1II CATG 6 cut(s) 101, 382, 388, 499, 546, 589
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 3 cut(s) 459, 465, 642
HphI GGTGA 5 cut(s) 55, 236, 356, 460, 511
Hpy166II GTNNAC 2 cut(s) 187, 625
Hpy188I TCNGA 3 cut(s) 218, 464, 749
Hpy8I GTNNAC 2 cut(s) 187, 625
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 5 cut(s) 296, 416, 469, 529, 638
HpyCH4III ACNGT 2 cut(s) 307, 483
HpyCH4IV ACGT 3 cut(s) 513, 531, 575
HpyCH4V TGCA 4 cut(s) 101, 354, 542, 589
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 423, 586
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 3 cut(s) 513, 531, 575
Hsp92II CATG 6 cut(s) 101, 382, 388, 499, 546, 589
Kzo9I GATC 2 cut(s) 271, 504
LguI GCTCTTC 1 cut(s) 667
LpnPI CCDG 8 cut(s) 141, 244, 402, 447, 566, 577, 647, 650
Lsp1109I GCAGC 3 cut(s) 181, 526, 630
LweI GCATC 1 cut(s) 28
MaeII ACGT 3 cut(s) 513, 531, 575
MaeIII GTNAC 4 cut(s) 152, 242, 257, 301
MalI GATC 2 cut(s) 273, 506
MboI GATC 2 cut(s) 271, 504
MboII GAAGA 5 cut(s) 389, 459, 462, 579, 684
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 679
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 4 cut(s) 319, 355, 595, 607
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 2 cut(s) 468, 636
MmeI TCCRAC 1 cut(s) 534
Mox20I TGGCCA 1 cut(s) 584
MscI TGGCCA 1 cut(s) 584
MseI TTAA 1 cut(s) 651
MslI CAYNNNNRTG 2 cut(s) 383, 500
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 236, 423, 586
NdeII GATC 2 cut(s) 271, 504
NlaIII CATG 6 cut(s) 101, 382, 388, 499, 546, 589
NlaIV GGNNCC 4 cut(s) 6, 115, 284, 699
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 1 cut(s) 382
NspV TTCGAA 1 cut(s) 631
PceI AGGCCT 1 cut(s) 230
PciI ACATGT 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 667
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PfeI GAWTC 1 cut(s) 465
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 3 cut(s) 196, 541, 620
PleI GAGTC 2 cut(s) 467, 636
PpsI GAGTC 2 cut(s) 467, 636
PscI ACATGT 1 cut(s) 378
PspFI CCCAGC 1 cut(s) 127
PspN4I GGNNCC 4 cut(s) 6, 115, 284, 699
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 2 cut(s) 383, 500
SapI GCTCTTC 1 cut(s) 667
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 3 cut(s) 195, 540, 619
Sau3AI GATC 2 cut(s) 271, 504
Sau96I GGNCC 1 cut(s) 114
SchI GAGTC 2 cut(s) 468, 636
SduI GDGCHC 1 cut(s) 679
SfaNI GCATC 1 cut(s) 28
SfuI TTCGAA 1 cut(s) 631
SinI GGWCC 1 cut(s) 114
SmiMI CAYNNNNRTG 2 cut(s) 383, 500
Sse9I AATT 4 cut(s) 319, 355, 595, 607
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 4 cut(s) 312, 456, 519, 525
StuI AGGCCT 1 cut(s) 230
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 307, 483
TaiI ACGT 3 cut(s) 516, 534, 578
TaqI TCGA 5 cut(s) 289, 375, 485, 557, 631
TasI AATT 4 cut(s) 319, 355, 595, 607
TfiI GAWTC 1 cut(s) 465
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 3 cut(s) 194, 539, 618
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 435, 720
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 666
Van91I CCANNNNNTGG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 114
XceI RCATGY 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.