Rmu_sc0016967.1_g000001

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016967.1
OG0014349
Physical Location & Seq
Forward (+)
3264 .. 4227
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016967.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
atgaaagctgcaggttctttctgtgttcttttttggcagattatcttctttgttagtgtagttttggagggcatcaatggcgctcaagctaatggttggcttaacgctcatgcaactttctatggggtcaaccaggaccctgccacccttggaggtgcgtgtggttatggaaatacaatgcttgcggggttcggagtgaacacagcagcagttagtggcatacttttcagaggtggcgaggcatgtggtgcttgttaccaagtgatgtgcaactataagttggatccaaagtggtgccttcaacgacgagccgtgactgtatcagccaccaatttctgccccccaaacaacaatggagggtggtgcaatccccctcaccaccacttcgacatgtctatgccggcttttcttcgcattgcacgacaaggaaatgaaggcattgttcctgtgatctacagaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

154

Amino Acids

16.65

Weight (kDa)

8.69

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15370 AT3G15370
fragaria_vesca FvH4_3g20110
malus_domestica MD03G1225900.v1.1 MD11G1245100.v1.1 MD11G1245500.v1.1
prunus_persica Prupe.4G183400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033911
rosa_laevigata RLG00000033510
rosa_multiflora Rmu_sc0001150.1_g000013 Rmu_sc0016967.1_g000001
rosa_rugosa Rorug05G0143300.1
rosa_samantha Rh5AG234100 Rh5BG234700 Rh5CG265000 Rh5DG241600
rosa_wichuraiana Rw5G021520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2
AccB1I GGYRCC 1 cut(s) 294
AciI CCGC 1 cut(s) 185
AclWI GGATC 2 cut(s) 278, 291
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 2 cut(s) 8, 89
AluI AGCT 2 cut(s) 8, 89
AlwI GGATC 2 cut(s) 278, 291
ApeKI GCWGC 2 cut(s) 8, 206
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 134
BfmI CTRYAG 2 cut(s) 9, 454
BfoI RGCGCY 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 2
BisI GCNGC 2 cut(s) 9, 207
BlsI GCNGC 2 cut(s) 10, 208
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 3 cut(s) 138, 285, 296
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 414
BseXI GCAGC 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 401
Bsp143I GATC 2 cut(s) 283, 450
BspACI CCGC 1 cut(s) 185
BspLI GGNNCC 3 cut(s) 138, 285, 296
BspMAI CTGCAG 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 2
BspPI GGATC 2 cut(s) 278, 291
BspT107I GGYRCC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 2 cut(s) 283, 450
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 183, 402
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 2 cut(s) 286, 453
BstMBI GATC 2 cut(s) 283, 450
BstMWI GCNNNNNNNGC 2 cut(s) 78, 248
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 2 cut(s) 246, 394
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 2 cut(s) 9, 454
BstV1I GCAGC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BveI ACCTGC 1 cut(s) 2
Cac8I GCNNGC 2 cut(s) 183, 402
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 136
CviAII CATG 3 cut(s) 110, 243, 391
CviJI RGCY 6 cut(s) 8, 89, 100, 311, 326, 404
CviKI_1 RGCY 6 cut(s) 8, 89, 100, 311, 326, 404
DpnI GATC 2 cut(s) 285, 452
DpnII GATC 2 cut(s) 283, 450
Eco130I CCWWGG 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 3 cut(s) 113, 246, 394
FaiI YATR 8 cut(s) 111, 123, 168, 221, 244, 276, 392, 398
FatI CATG 3 cut(s) 109, 242, 390
FauI CCCGC 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 9, 207
Fsp4HI GCNGC 2 cut(s) 9, 207
GlaI GCGC 1 cut(s) 82
GluI GCNGC 2 cut(s) 9, 207
HaeII RGCGCY 1 cut(s) 84
HapII CCGG 1 cut(s) 401
HhaI GCGC 1 cut(s) 83
Hin1II CATG 3 cut(s) 113, 246, 394
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HpaII CCGG 1 cut(s) 401
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 2 cut(s) 130, 199
Hpy188I TCNGA 2 cut(s) 194, 230
Hpy8I GTNNAC 2 cut(s) 130, 199
Hpy99I CGWCG 1 cut(s) 309
HpyAV CCTTC 3 cut(s) 308, 428, 453
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 5 cut(s) 11, 113, 270, 366, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 248
Hsp92II CATG 3 cut(s) 113, 246, 394
HspAI GCGC 1 cut(s) 81
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Kzo9I GATC 2 cut(s) 283, 450
LpnPI CCDG 5 cut(s) 119, 146, 153, 414, 459
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 254, 313
MalI GATC 2 cut(s) 285, 452
MboI GATC 2 cut(s) 283, 450
MboII GAAGA 2 cut(s) 37, 401
MflI RGATCY 1 cut(s) 283
MluCI AATT 1 cut(s) 331
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 6 cut(s) 61, 146, 224, 232, 350, 384
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 395
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 78, 248
NaeI GCCGGC 1 cut(s) 402
NdeII GATC 2 cut(s) 283, 450
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 3 cut(s) 113, 246, 394
NlaIV GGNNCC 3 cut(s) 138, 285, 296
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 2 cut(s) 246, 394
PciI ACATGT 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 402
PkrI GCNGC 2 cut(s) 10, 208
PpuMI RGGWCCY 1 cut(s) 136
PscI ACATGT 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 3 cut(s) 138, 285, 296
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 9, 207
Sau3AI GATC 2 cut(s) 283, 450
Sau96I GGNCC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 134
SetI ASST 6 cut(s) 10, 16, 91, 157, 235, 464
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 2 cut(s) 9, 454
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 1 cut(s) 331
SsiI CCGC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 387
TasI AATT 1 cut(s) 331
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 2 cut(s) 8, 206
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 17, 447
VpaK11BI GGWCC 1 cut(s) 136
XceI RCATGY 2 cut(s) 246, 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.