Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014349

Physical Location & Seq

Genomic Coordinates Reverse (-)

28363760 .. 28366054

Gene Structure 2295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG234100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAAAGCTGCAGGTTCTTTCTGTGTTCTTTTTTGGCAGATTATCTTCTTTGTTAGTGTAGTTTTGGAGGGCATCAATGGCGCTCAAGCTAATGGTTGGCTTAACGCTCATGCAACTTTCTATGGGGTCAACCAGGACCCTGCCACCCTTGGAGGTGCGTGTGGTTATGGAAATACATTAATGCTTGCGGGGTTCGGAGTGAACACAGCAGCAGTTAGTGGCATACTTTTCAGAGGTGGCGAGGCATGTGGTGCTTGTTACCAAGTGATGTGCAACTATAAGTTGGATCCAAAGTGGTGCCTTCAACGACGAGCCGTGACTGTATCAGCCACCAATTTCTGCCCGCCAAACAACAATGGAGGGTGGTGCAATCCCCCTCACCACCACTTCGACATGTCTATGCCGGCGTTTCTTCTCATTGCACGACAAGGAAATGAAGGCATTGTTCCTGTGATCTACAGAAGGGTGGCTTGTAAACGAAGAGGAGGAGTCCGATTCACGTTGAAAGGGCAATCGAGTTTTAACATGGTGATGATATCGAATGTTGGCGGAAGCGGCGCCGCGAAGGGGGCGTGGATAAGGGTGTCGAGGATGAGAAGCGGCACATGGATACCGATGCATAGGAATTGGGGTGCGAATTGGCAAAGCAGCATCGACCTGAGAAATCAACAACTTTCTTTCAAGCTCACTTTGATTGATGGAAAAGCCCTAGTGTTTTACAACGTTGTTCCTTCCACTTGGAGATTTGGACAAACATTTTCATCCCAGAACCAGTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

260

Amino Acids

28.51

Weight (kDa)

9.87

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	38 - 127	2.3e-07	EXPB1-like domain 1
DPBB_1	PF03330	69 - 153	1.7e-18	Lytic transglycolase
Expansin_C	PF01357	164 - 244	5.2e-23	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15370 AT3G15370
fragaria_vesca	FvH4_3g20110
malus_domestica	MD03G1225900.v1.1 MD11G1245100.v1.1 MD11G1245500.v1.1
prunus_persica	Prupe.4G183400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033911
rosa_laevigata	RLG00000033510
rosa_multiflora	Rmu_sc0001150.1_g000013 Rmu_sc0016967.1_g000001
rosa_rugosa	Rorug05G0143300.1
rosa_samantha	Rh5AG234100 Rh5BG234700 Rh5CG265000 Rh5DG241600
rosa_wichuraiana	Rw5G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AccB1I	GGYRCC	2 cut(s)	297, 557
AccII	CGCG	1 cut(s)	563
AciI	CCGC	6 cut(s)	188, 344, 549, 555, 561, 600
AclI	AACGTT	1 cut(s)	723
AclWI	GGATC	2 cut(s)	281, 294
AcyI	GRCGYC	1 cut(s)	558
AfiI	CCNNNNNNNGG	1 cut(s)	567
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	3 cut(s)	305, 505, 682
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	8, 89, 685
AluI	AGCT	3 cut(s)	8, 89, 685
AlwI	GGATC	2 cut(s)	281, 294
ApeKI	GCWGC	3 cut(s)	8, 209, 648
AseI	ATTAAT	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	773
AspLEI	GCGC	2 cut(s)	83, 560
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	371, 541
AvaII	GGWCC	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	2 cut(s)	297, 557
BbvI	GCAGC	2 cut(s)	221, 660
BccI	CCATC	1 cut(s)	692
BceAI	ACGGC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	134
BciVI	GTATCC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	2 cut(s)	9, 457
BfoI	RGCGCY	2 cut(s)	84, 561
BfuAI	ACCTGC	1 cut(s)	2
BfuI	GTATCC	1 cut(s)	603
BisI	GCNGC	6 cut(s)	9, 210, 556, 561, 601, 649
BlsI	GCNGC	6 cut(s)	10, 211, 557, 562, 602, 650
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	4 cut(s)	138, 288, 299, 559
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	3 cut(s)	81, 606, 660
BpuEI	CTTGAG	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse118I	RCCGGY	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	597, 761
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	2 cut(s)	498, 501
BseXI	GCAGC	2 cut(s)	221, 660
Bsh1236I	CGCG	1 cut(s)	563
BshNI	GGYRCC	2 cut(s)	297, 557
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	286, 453
BspACI	CCGC	6 cut(s)	188, 344, 549, 555, 561, 600
BspCNI	CTCAG	1 cut(s)	651
BspFNI	CGCG	1 cut(s)	563
BspLI	GGNNCC	4 cut(s)	138, 288, 299, 559
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	2 cut(s)	281, 294
BspT107I	GGYRCC	2 cut(s)	297, 557
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	772
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	286, 453
BssNI	GRCGYC	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	475
BstACI	GRCGYC	1 cut(s)	558
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstC8I	GCNNGC	3 cut(s)	186, 344, 405
BstDEI	CTNAG	2 cut(s)	659, 780
BstF5I	GGATG	2 cut(s)	597, 761
BstFNI	CGCG	1 cut(s)	563
BstH2I	RGCGCY	2 cut(s)	84, 561
BstHHI	GCGC	2 cut(s)	83, 560
BstKTI	GATC	2 cut(s)	289, 456
BstMBI	GATC	2 cut(s)	286, 453
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 251, 555, 569
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	249, 397
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	2 cut(s)	9, 457
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	2 cut(s)	221, 660
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuI	GTATCC	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	597, 761
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	3 cut(s)	186, 344, 405
CfoI	GCGC	2 cut(s)	83, 560
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	136
CviAII	CATG	5 cut(s)	110, 246, 394, 526, 606
CviJI	RGCY	8 cut(s)	8, 89, 100, 314, 329, 470, 685, 707
CviKI_1	RGCY	8 cut(s)	8, 89, 100, 314, 329, 470, 685, 707
DdeI	CTNAG	2 cut(s)	659, 780
DinI	GGCGCC	1 cut(s)	559
DpnI	GATC	2 cut(s)	288, 455
DpnII	GATC	2 cut(s)	286, 453
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
EciI	GGCGGA	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	537
EcoT14I	CCWWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	621
EgeI	GGCGCC	1 cut(s)	559
EheI	GGCGCC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	5 cut(s)	113, 249, 397, 529, 609
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FatI	CATG	5 cut(s)	109, 245, 393, 525, 605
FauI	CCCGC	2 cut(s)	181, 351
Fnu4HI	GCNGC	6 cut(s)	9, 210, 556, 561, 601, 649
FokI	GGATG	2 cut(s)	604, 748
Fsp4HI	GCNGC	6 cut(s)	9, 210, 556, 561, 601, 649
FspBI	CTAG	1 cut(s)	710
GlaI	GCGC	2 cut(s)	82, 559
GluI	GCNGC	6 cut(s)	9, 210, 556, 561, 601, 649
HaeII	RGCGCY	2 cut(s)	84, 561
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	2 cut(s)	83, 560
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	5 cut(s)	113, 249, 397, 529, 609
Hin6I	GCGC	2 cut(s)	81, 558
HinP1I	GCGC	2 cut(s)	81, 558
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	489, 495
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	2 cut(s)	371, 541
Hpy166II	GTNNAC	3 cut(s)	130, 202, 476
Hpy188I	TCNGA	3 cut(s)	197, 233, 494
Hpy8I	GTNNAC	3 cut(s)	130, 202, 476
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	5 cut(s)	311, 431, 456, 559, 741
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	500, 723
HpyCH4V	TGCA	6 cut(s)	11, 113, 273, 369, 422, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 251, 555, 569
HpyF3I	CTNAG	2 cut(s)	659, 780
HpySE526I	ACGT	2 cut(s)	500, 723
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	5 cut(s)	113, 249, 397, 529, 609
HspAI	GCGC	2 cut(s)	81, 558
KasI	GGCGCC	1 cut(s)	557
KroI	GCCGGC	1 cut(s)	403
KroNI	GCCGGC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	286, 453
LpnPI	CCDG	7 cut(s)	119, 146, 153, 417, 462, 671, 779
Lsp1109I	GCAGC	2 cut(s)	221, 660
LweI	GCATC	3 cut(s)	81, 606, 660
MaeI	CTAG	1 cut(s)	710
MaeII	ACGT	2 cut(s)	500, 723
MaeIII	GTNAC	2 cut(s)	257, 316
MalI	GATC	2 cut(s)	288, 455
MboI	GATC	2 cut(s)	286, 453
MboII	GAAGA	3 cut(s)	37, 404, 492
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	3 cut(s)	334, 625, 637
Mly113I	GGCGCC	1 cut(s)	558
MlyI	GAGTC	1 cut(s)	498
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	9 cut(s)	61, 146, 227, 235, 353, 387, 476, 479, 582
Mph1103I	ATGCAT	1 cut(s)	621
MroNI	GCCGGC	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	773
MseI	TTAA	3 cut(s)	102, 179, 522
MslI	CAYNNNNRTG	2 cut(s)	398, 530
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	4 cut(s)	78, 251, 555, 569
NaeI	GCCGGC	1 cut(s)	405
NarI	GGCGCC	1 cut(s)	558
NdeII	GATC	2 cut(s)	286, 453
NgoMIV	GCCGGC	1 cut(s)	403
NlaIII	CATG	5 cut(s)	113, 249, 397, 529, 609
NlaIV	GGNNCC	4 cut(s)	138, 288, 299, 559
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	621
NspI	RCATGY	2 cut(s)	249, 397
PciI	ACATGT	1 cut(s)	393
PdiI	GCCGGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	773
PfeI	GAWTC	1 cut(s)	495
PkrI	GCNGC	6 cut(s)	10, 211, 557, 562, 602, 650
PleI	GAGTC	1 cut(s)	497
PluTI	GGCGCC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	497
PpuMI	RGGWCCY	1 cut(s)	136
PscI	ACATGT	1 cut(s)	393
PshBI	ATTAAT	1 cut(s)	179
Psp1406I	AACGTT	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	4 cut(s)	138, 288, 299, 559
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	286
RseI	CAYNNNNRTG	2 cut(s)	398, 530
SaqAI	TTAA	3 cut(s)	102, 179, 522
SatI	GCNGC	6 cut(s)	9, 210, 556, 561, 601, 649
Sau3AI	GATC	2 cut(s)	286, 453
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	498
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	9 cut(s)	10, 16, 91, 157, 238, 503, 660, 687, 726
SfaNI	GCATC	3 cut(s)	81, 606, 660
SfcI	CTRYAG	2 cut(s)	9, 457
SfoI	GGCGCC	1 cut(s)	559
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	398, 530
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	3 cut(s)	334, 625, 637
SsiI	CCGC	6 cut(s)	188, 344, 549, 555, 561, 600
SspDI	GGCGCC	1 cut(s)	557
SspMI	CTAG	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	2 cut(s)	503, 726
TaqI	TCGA	5 cut(s)	390, 515, 539, 587, 654
TasI	AATT	3 cut(s)	334, 625, 637
TauI	GCSGC	3 cut(s)	558, 563, 603
TfiI	GAWTC	1 cut(s)	495
Tru1I	TTAA	3 cut(s)	102, 179, 522
Tru9I	TTAA	3 cut(s)	102, 179, 522
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	3 cut(s)	8, 209, 648
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	17, 450, 750
VpaK11BI	GGWCC	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	179
XceI	RCATGY	2 cut(s)	249, 397
XmnI	GAANNNNTTC	1 cut(s)	773
XspI	CTAG	1 cut(s)	710
Zsp2I	ATGCAT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.