Prupe.4G183400_v2.0.a1

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014349
Physical Location & Seq
Forward (+)
10861181 .. 10863415
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G183400.1

Sequence Viewer

Length: 798 bp
ATGGCGCCTCCTCTTGGTCTTTCTGCAGTTTCTTCTTGTGCTTCTTTTTGGCATATTTTCTTGTTGGTTAGTATGGTTTTGGAGGGCATGATCATCGTCAATGTCGAAGCCAGCGGCTGGCTCAGTGGCCATGCAACTTTCTATGGGACGAACCAGGACCCCGCCACCCTTGGGGGTGCTTGTGGTTATGACAACACCTTCCATGCGGGGTTTGGAGTGAACACAGCAGCAGTGAGCAGCACACTTTTCAGAGGAGGGGAGGCATGCGGGGCTTGTTACCAAGTGACCTGCAACTACAGGATCGATCCCAAGTGGTGCCTTCAACGCCGTGCCGTTACGGTTACGGCCACCAATTTCTGCCCCCCGAACAACAACGGAGGGTGGTGCAATGCTCCTCACCAGCACTTTGACATGTCGACGCCAGCTTTTCTTCGCATTGCACGACAAGGCAATGAAGGCATAGTTCCTGTCATTTATAGAAGGGTGTCGTGTCAAAGAAGAGGAGGGGTTCGATTCACCTTGAAGGGACAGTCAAATTTCAACATGGTGATGATATCCAACGTTGGAGGAAGTGGGGACGTGAAGGCTGCATGGATACGGGGGTCGAGGATGAGGAGAGGGACGTGGCTGCCCATGCACAGGAATTGGGGTGCAAATTGGCAAAGCAGCATCGATCTCCGAAACCAAAAGCTCTCTTTCAAGCTCACCTTGGTTGATGGAAGATCACTAGTATTTTCCAATGTTGTTCCTTCCACTTGGAGTTTTGGACAAACATTTTCATCCCGCAACCAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

266

Amino Acids

29.1

Weight (kDa)

9.83

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15370 AT3G15370
fragaria_vesca FvH4_3g20110
malus_domestica MD03G1225900.v1.1 MD11G1245100.v1.1 MD11G1245500.v1.1
prunus_persica Prupe.4G183400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033911
rosa_laevigata RLG00000033510
rosa_multiflora Rmu_sc0001150.1_g000013 Rmu_sc0016967.1_g000001
rosa_rugosa Rorug05G0143300.1
rosa_samantha Rh5AG234100 Rh5BG234700 Rh5CG265000 Rh5DG241600
rosa_wichuraiana Rw5G021520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 2 cut(s) 4, 315
AccB7I CCANNNNNTGG 1 cut(s) 117
AccI GTMKAC 1 cut(s) 416
AciI CCGC 5 cut(s) 114, 162, 206, 267, 784
AclI AACGTT 1 cut(s) 561
AclWI GGATC 2 cut(s) 299, 308
AcoI YGGCCR 2 cut(s) 127, 345
AcsI RAATTY 1 cut(s) 535
AcyI GRCGYC 2 cut(s) 5, 419
AfiI CCNNNNNNNGG 4 cut(s) 14, 117, 171, 639
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 4 cut(s) 323, 523, 541, 700
AhlI ACTAGT 1 cut(s) 727
AjiI CACGTC 2 cut(s) 580, 624
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 3 cut(s) 425, 691, 703
AluI AGCT 3 cut(s) 425, 691, 703
AlwI GGATC 2 cut(s) 299, 308
AlwNI CAGNNNCTG 1 cut(s) 117
AoxI GGCC 2 cut(s) 127, 345
ApeKI GCWGC 5 cut(s) 227, 237, 587, 628, 666
ApoI RAATTY 1 cut(s) 535
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 4 cut(s) 389, 508, 559, 697
AvaII GGWCC 1 cut(s) 157
BaeI ACNNNNGTAYC 2 cut(s) 587, 620
BalI TGGCCA 1 cut(s) 129
BanI GGYRCC 2 cut(s) 4, 315
BbvI GCAGC 5 cut(s) 239, 249, 574, 615, 678
BccI CCATC 1 cut(s) 710
BceAI ACGGC 3 cut(s) 312, 317, 360
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 1 cut(s) 155
BciVI GTATCC 1 cut(s) 588
BclI TGATCA 1 cut(s) 90
BcuI ACTAGT 1 cut(s) 727
BfaI CTAG 1 cut(s) 728
BfmI CTRYAG 2 cut(s) 24, 295
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 296
BfuI GTATCC 1 cut(s) 588
BisI GCNGC 6 cut(s) 115, 228, 238, 588, 629, 667
BlsI GCNGC 6 cut(s) 116, 229, 239, 589, 630, 668
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 157
BmgBI CACGTC 2 cut(s) 580, 624
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 3 cut(s) 6, 159, 317
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 678
Bsa29I ATCGAT 2 cut(s) 303, 672
BsaHI GRCGYC 2 cut(s) 5, 419
BsaJI CCNNGG 2 cut(s) 169, 708
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 117, 171, 639
Bse1I ACTGG 1 cut(s) 790
Bse3DI GCAATG 3 cut(s) 394, 435, 457
BseBI CCWGG 1 cut(s) 155
BseCI ATCGAT 2 cut(s) 303, 672
BseDI CCNNGG 2 cut(s) 169, 708
BseGI GGATG 2 cut(s) 615, 779
BseLI CCNNNNNNNGG 4 cut(s) 14, 117, 171, 639
BseMI GCAATG 3 cut(s) 394, 435, 457
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 790
BseRI GAGGAG 4 cut(s) 267, 384, 516, 628
BseXI GCAGC 5 cut(s) 239, 249, 574, 615, 678
BshFI GGCC 2 cut(s) 129, 347
BshNI GGYRCC 2 cut(s) 4, 315
BshVI ATCGAT 2 cut(s) 303, 672
BslFI GGGAC 4 cut(s) 160, 540, 590, 634
BslI CCNNNNNNNGG 4 cut(s) 14, 117, 171, 639
BsmFI GGGAC 4 cut(s) 160, 540, 590, 634
BsnI GGCC 2 cut(s) 129, 347
Bsp143I GATC 5 cut(s) 90, 300, 304, 673, 722
BspACI CCGC 5 cut(s) 114, 162, 206, 267, 784
BspANI GGCC 2 cut(s) 129, 347
BspCNI CTCAG 1 cut(s) 135
BspDI ATCGAT 2 cut(s) 303, 672
BspLI GGNNCC 3 cut(s) 6, 159, 317
BspMAI CTGCAG 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 2 cut(s) 299, 308
BspT107I GGYRCC 2 cut(s) 4, 315
BsrDI GCAATG 3 cut(s) 394, 435, 457
BsrI ACTGG 1 cut(s) 790
BssECI CCNNGG 2 cut(s) 169, 708
BssMI GATC 5 cut(s) 90, 300, 304, 673, 722
BssNI GRCGYC 2 cut(s) 5, 419
BssT1I CCWWGG 2 cut(s) 169, 708
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 340, 531
Bst6I CTCTTC 1 cut(s) 493
BstACI GRCGYC 2 cut(s) 5, 419
BstC8I GCNNGC 4 cut(s) 112, 119, 265, 423
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 2 cut(s) 615, 779
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 93, 303, 307, 676, 725
BstMBI GATC 5 cut(s) 90, 300, 304, 673, 722
BstMWI GCNNNNNNNGC 4 cut(s) 269, 324, 456, 634
BstNI CCWGG 1 cut(s) 155
BstNSI RCATGY 2 cut(s) 267, 415
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 2 cut(s) 24, 295
BstV1I GCAGC 5 cut(s) 239, 249, 574, 615, 678
Bsu15I ATCGAT 2 cut(s) 303, 672
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 2 cut(s) 129, 347
BsuTUI ATCGAT 2 cut(s) 303, 672
BtrI CACGTC 2 cut(s) 580, 624
BtsCI GGATG 2 cut(s) 615, 779
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 130, 237
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 4 cut(s) 112, 119, 265, 423
CaiI CAGNNNCTG 1 cut(s) 117
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 157
ClaI ATCGAT 2 cut(s) 303, 672
CseI GACGC 1 cut(s) 427
CviAII CATG 8 cut(s) 88, 131, 203, 264, 412, 544, 591, 634
DdeI CTNAG 1 cut(s) 122
DinI GGCGCC 1 cut(s) 6
DpnI GATC 5 cut(s) 92, 302, 306, 675, 724
DpnII GATC 5 cut(s) 90, 300, 304, 673, 722
EaeI YGGCCR 2 cut(s) 127, 345
Eam1104I CTCTTC 1 cut(s) 493
EarI CTCTTC 1 cut(s) 493
Eco130I CCWWGG 2 cut(s) 169, 708
Eco32I GATATC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 153
EcoRV GATATC 1 cut(s) 555
EcoT14I CCWWGG 2 cut(s) 169, 708
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 169, 708
FaeI CATG 8 cut(s) 91, 134, 206, 267, 415, 547, 594, 637
FalI AAGNNNNNCTT 2 cut(s) 692, 724
FaqI GGGAC 4 cut(s) 160, 540, 590, 634
FatI CATG 8 cut(s) 87, 130, 202, 263, 411, 543, 590, 633
FauI CCCGC 4 cut(s) 169, 199, 260, 791
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 416
Fnu4HI GCNGC 6 cut(s) 115, 228, 238, 588, 629, 667
FokI GGATG 2 cut(s) 622, 766
Fsp4HI GCNGC 6 cut(s) 115, 228, 238, 588, 629, 667
FspBI CTAG 1 cut(s) 728
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 115, 228, 238, 588, 629, 667
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 129, 347
HgaI GACGC 1 cut(s) 427
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 5, 419
Hin1II CATG 8 cut(s) 91, 134, 206, 267, 415, 547, 594, 637
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 1 cut(s) 513
HphI GGTGA 4 cut(s) 389, 508, 559, 697
Hpy166II GTNNAC 2 cut(s) 220, 417
Hpy188I TCNGA 3 cut(s) 251, 680, 797
Hpy8I GTNNAC 2 cut(s) 220, 417
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 7 cut(s) 208, 329, 449, 474, 517, 577, 759
HpyCH4III ACNGT 2 cut(s) 340, 531
HpyCH4IV ACGT 3 cut(s) 561, 579, 623
HpyCH4V TGCA 8 cut(s) 26, 134, 291, 387, 440, 590, 637, 653
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 324, 456, 634
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 3 cut(s) 561, 579, 623
Hsp92I GRCGYC 2 cut(s) 5, 419
Hsp92II CATG 8 cut(s) 91, 134, 206, 267, 415, 547, 594, 637
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 5 cut(s) 90, 300, 304, 673, 722
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 5 cut(s) 239, 249, 574, 615, 678
LweI GCATC 1 cut(s) 678
MaeI CTAG 1 cut(s) 728
MaeII ACGT 3 cut(s) 561, 579, 623
MaeIII GTNAC 4 cut(s) 275, 283, 334, 340
MalI GATC 5 cut(s) 92, 302, 306, 675, 724
MboI GATC 5 cut(s) 90, 300, 304, 673, 722
MboII GAAGA 4 cut(s) 24, 422, 510, 732
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 4 cut(s) 352, 535, 643, 655
MluNI TGGCCA 1 cut(s) 129
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 544, 582
Mox20I TGGCCA 1 cut(s) 129
MscI TGGCCA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 548
Msp20I TGGCCA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 4 cut(s) 269, 324, 456, 634
NarI GGCGCC 1 cut(s) 5
NdeII GATC 5 cut(s) 90, 300, 304, 673, 722
NlaIII CATG 8 cut(s) 91, 134, 206, 267, 415, 547, 594, 637
NlaIV GGNNCC 3 cut(s) 6, 159, 317
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 2 cut(s) 267, 415
PaeI GCATGC 1 cut(s) 267
PciI ACATGT 1 cut(s) 411
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 439
PfeI GAWTC 1 cut(s) 513
PflMI CCANNNNNTGG 1 cut(s) 117
PkrI GCNGC 6 cut(s) 116, 229, 239, 589, 630, 668
PluTI GGCGCC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 157
PscI ACATGT 1 cut(s) 411
Psp1406I AACGTT 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 3 cut(s) 6, 159, 317
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 548
SalI GTCGAC 1 cut(s) 415
SatI GCNGC 6 cut(s) 115, 228, 238, 588, 629, 667
Sau3AI GATC 5 cut(s) 90, 300, 304, 673, 722
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 155
SfaNI GCATC 1 cut(s) 678
SfcI CTRYAG 2 cut(s) 24, 295
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 548
SpeI ACTAGT 1 cut(s) 727
SphI GCATGC 1 cut(s) 267
Sse9I AATT 4 cut(s) 352, 535, 643, 655
SsiI CCGC 5 cut(s) 114, 162, 206, 267, 784
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 2 cut(s) 169, 708
TaaI ACNGT 2 cut(s) 340, 531
TaiI ACGT 3 cut(s) 564, 582, 626
TaqI TCGA 6 cut(s) 105, 303, 416, 511, 605, 672
TasI AATT 4 cut(s) 352, 535, 643, 655
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 513
TscAI CASTG 2 cut(s) 130, 237
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 5 cut(s) 227, 237, 587, 628, 666
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 468, 768
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 2 cut(s) 130, 237
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 535
XceI RCATGY 2 cut(s) 267, 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 416
XspI CTAG 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.