FvH4_3g20110

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014349
Physical Location & Seq
Reverse (-)
13227020 .. 13227992
973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20110.t1

Sequence Viewer

Length: 780 bp
ATGAAAGCTAGAGGTTCTTTCTGTGTTCTGTTTCGGCAGATCATCTTCTTTGTTAGTGTAGTTTTGGTGGGCATCAATGGTGCTCAAGCTAGTGCCTGGCTTAACGCTCATGCAACTTTCTATGGGGTCAACCAGGACCCTGCCACCTTTGGAGGTGCTTGTGGTTATGAAAATACAATGGTAACGGCGTTCGGAGTGAACACAGCAGCAGTAAGTACCATTCTTTTCAGAGGTGGAGAGGCATGCGGTGCTTGTTACCAAGTGATGTGCAACTATAAGGTGGATCCAAAGTGGTGCCTTCGACGAGGAGCCGTGACTGTATCCGCCACCAATTTCTGCCCCCCAAACAACAACGGAGGGTGGTGCAATGCCCCTCACCACCATTTCGACATGTCTATGCCGGCTTTTCTTCGCATTGCGCGACAAGGCAACGAAGGCATTGTTCCTGTGATCTACAGAAGGGTGGCTTGTATACGAAGAGGAGGAGTCAGATTCACGTTGAAGGGGCAATCGAGCTTTAACATGGTGATGGTATCGAATGTTGGCGGAAGCGGCGCCGTGAAGGGGGCGTGGATACGGGGGTCGAGGATGAGGAGAGCAACATGGATGCCGATGCATAGGAATTGGGGTGCCAATTGGCAAAGCAGCATCGACCTGAGGAACCAACGACTGTCGTTCAAGCTCACCTTGGTTGATGGAAAAACCCTAGTGTTTAACAACGTTGTTCCTTCCACTTGGAGATTTGGACAAACATTTTCATCCCACAACCAGTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

260

Amino Acids

28.58

Weight (kDa)

10.44

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 38 - 126 3e-08 EXPB1-like domain 1
DPBB_1 PF03330 68 - 152 8.9e-19 Lytic transglycolase
Expansin_C PF01357 163 - 243 3.5e-25 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15370 AT3G15370
fragaria_vesca FvH4_3g20110
malus_domestica MD03G1225900.v1.1 MD11G1245100.v1.1 MD11G1245500.v1.1
prunus_persica Prupe.4G183400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033911
rosa_laevigata RLG00000033510
rosa_multiflora Rmu_sc0001150.1_g000013 Rmu_sc0016967.1_g000001
rosa_rugosa Rorug05G0143300.1
rosa_samantha Rh5AG234100 Rh5BG234700 Rh5CG265000 Rh5DG241600
rosa_wichuraiana Rw5G021520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 294, 554, 629
AccI GTMKAC 1 cut(s) 472
AccII CGCG 1 cut(s) 421
AciI CCGC 4 cut(s) 246, 324, 546, 552
AclI AACGTT 1 cut(s) 720
AclWI GGATC 2 cut(s) 278, 291
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 564
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 2 cut(s) 502, 679
AjnI CCWGG 2 cut(s) 95, 132
AluBI AGCT 4 cut(s) 8, 89, 516, 682
AluI AGCT 4 cut(s) 8, 89, 516, 682
Alw21I GWGCWC 1 cut(s) 85
AlwI GGATC 2 cut(s) 278, 291
ApeKI GCWGC 2 cut(s) 206, 645
AspLEI GCGC 2 cut(s) 421, 557
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 3 cut(s) 368, 538, 676
AvaII GGWCC 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 656
BaeI ACNNNNGTAYC 2 cut(s) 566, 599
BamHI GGATCC 1 cut(s) 283
BanI GGYRCC 3 cut(s) 294, 554, 629
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 218, 657
BccI CCATC 2 cut(s) 523, 689
BceAI ACGGC 3 cut(s) 201, 296, 542
BciT130I CCWGG 2 cut(s) 97, 134
BciVI GTATCC 2 cut(s) 331, 567
BfaI CTAG 3 cut(s) 9, 90, 707
BfmI CTRYAG 1 cut(s) 454
BfoI RGCGCY 1 cut(s) 558
BfuI GTATCC 2 cut(s) 331, 567
BisI GCNGC 3 cut(s) 207, 553, 646
BlsI GCNGC 3 cut(s) 208, 554, 647
Bme1390I CCNGG 2 cut(s) 97, 134
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 7 cut(s) 138, 285, 296, 310, 556, 631, 662
BmrFI CCNGG 2 cut(s) 97, 134
BmsI GCATC 4 cut(s) 81, 597, 603, 657
BpuEI CTTGAG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 687
Bsc4I CCNNNNNNNGG 1 cut(s) 564
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 769
Bse21I CCTNAGG 1 cut(s) 656
Bse3DI GCAATG 2 cut(s) 373, 414
BseBI CCWGG 2 cut(s) 97, 134
BseDI CCNNGG 1 cut(s) 687
BseGI GGATG 3 cut(s) 594, 612, 758
BseLI CCNNNNNNNGG 1 cut(s) 564
BseMI GCAATG 2 cut(s) 373, 414
BseMII CTCAG 1 cut(s) 647
BseNI ACTGG 1 cut(s) 769
BseRI GAGGAG 4 cut(s) 321, 495, 498, 607
BseXI GCAGC 2 cut(s) 218, 657
Bsh1236I CGCG 1 cut(s) 421
BshNI GGYRCC 3 cut(s) 294, 554, 629
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 3 cut(s) 39, 283, 450
BspACI CCGC 4 cut(s) 246, 324, 546, 552
BspCNI CTCAG 1 cut(s) 648
BspFNI CGCG 1 cut(s) 421
BspLI GGNNCC 7 cut(s) 138, 285, 296, 310, 556, 631, 662
BspPI GGATC 2 cut(s) 278, 291
BspT107I GGYRCC 3 cut(s) 294, 554, 629
BsrDI GCAATG 2 cut(s) 373, 414
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 1 cut(s) 769
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 687
BssMI GATC 3 cut(s) 39, 283, 450
BssNAI GTATAC 1 cut(s) 473
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 687
Bst1107I GTATAC 1 cut(s) 473
Bst2UI CCWGG 2 cut(s) 97, 134
Bst4CI ACNGT 2 cut(s) 319, 672
Bst6I CTCTTC 1 cut(s) 472
BstACI GRCGYC 1 cut(s) 555
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 244, 402
BstDEI CTNAG 1 cut(s) 656
BstF5I GGATG 3 cut(s) 594, 612, 758
BstFNI CGCG 1 cut(s) 421
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 2 cut(s) 421, 557
BstKTI GATC 3 cut(s) 42, 286, 453
BstMBI GATC 3 cut(s) 39, 283, 450
BstMWI GCNNNNNNNGC 3 cut(s) 248, 435, 552
BstNI CCWGG 2 cut(s) 97, 134
BstNSI RCATGY 2 cut(s) 246, 394
BstSCI CCNGG 2 cut(s) 95, 132
BstSFI CTRYAG 1 cut(s) 454
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 2 cut(s) 218, 657
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BstZ17I GTATAC 1 cut(s) 473
Bsu36I CCTNAGG 1 cut(s) 656
BsuI GTATCC 2 cut(s) 331, 567
BtsCI GGATG 3 cut(s) 594, 612, 758
Cac8I GCNNGC 2 cut(s) 244, 402
CfoI GCGC 2 cut(s) 421, 557
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 216
CviAII CATG 5 cut(s) 110, 243, 391, 523, 603
CviJI RGCY 8 cut(s) 8, 89, 100, 311, 404, 467, 516, 682
CviKI_1 RGCY 8 cut(s) 8, 89, 100, 311, 404, 467, 516, 682
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 656
DinI GGCGCC 1 cut(s) 556
DpnI GATC 3 cut(s) 41, 285, 452
DpnII GATC 3 cut(s) 39, 283, 450
Eam1104I CTCTTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 472
EciI GGCGGA 2 cut(s) 313, 561
Eco130I CCWWGG 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 136
Eco81I CCTNAGG 1 cut(s) 656
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 95, 132
EcoT14I CCWWGG 1 cut(s) 687
EcoT22I ATGCAT 1 cut(s) 618
EgeI GGCGCC 1 cut(s) 556
EheI GGCGCC 1 cut(s) 556
ErhI CCWWGG 1 cut(s) 687
FaeI CATG 5 cut(s) 113, 246, 394, 526, 606
FalI AAGNNNNNCTT 4 cut(s) 451, 483, 671, 703
FatI CATG 5 cut(s) 109, 242, 390, 522, 602
FblI GTMKAC 1 cut(s) 472
Fnu4HI GCNGC 3 cut(s) 207, 553, 646
FokI GGATG 3 cut(s) 601, 619, 745
Fsp4HI GCNGC 3 cut(s) 207, 553, 646
FspBI CTAG 3 cut(s) 9, 90, 707
GlaI GCGC 2 cut(s) 420, 556
GluI GCNGC 3 cut(s) 207, 553, 646
HaeII RGCGCY 1 cut(s) 558
HapII CCGG 1 cut(s) 401
HhaI GCGC 2 cut(s) 421, 557
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 5 cut(s) 113, 246, 394, 526, 606
Hin6I GCGC 2 cut(s) 419, 555
HinP1I GCGC 2 cut(s) 419, 555
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 2 cut(s) 486, 492
HpaII CCGG 1 cut(s) 401
HphI GGTGA 3 cut(s) 368, 538, 676
Hpy166II GTNNAC 3 cut(s) 130, 199, 473
Hpy188I TCNGA 3 cut(s) 194, 230, 491
Hpy8I GTNNAC 3 cut(s) 130, 199, 473
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 6 cut(s) 308, 428, 453, 496, 556, 738
HpyCH4III ACNGT 2 cut(s) 319, 672
HpyCH4IV ACGT 2 cut(s) 497, 720
HpyCH4V TGCA 4 cut(s) 113, 270, 366, 616
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 435, 552
HpyF3I CTNAG 1 cut(s) 656
HpySE526I ACGT 2 cut(s) 497, 720
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 5 cut(s) 113, 246, 394, 526, 606
HspAI GCGC 2 cut(s) 419, 555
KasI GGCGCC 1 cut(s) 554
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Kzo9I GATC 3 cut(s) 39, 283, 450
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 8 cut(s) 82, 109, 119, 146, 153, 414, 459, 668
Lsp1109I GCAGC 2 cut(s) 218, 657
LweI GCATC 4 cut(s) 81, 597, 603, 657
MaeI CTAG 3 cut(s) 9, 90, 707
MaeII ACGT 2 cut(s) 497, 720
MaeIII GTNAC 3 cut(s) 181, 254, 313
MalI GATC 3 cut(s) 41, 285, 452
MboI GATC 3 cut(s) 39, 283, 450
MboII GAAGA 3 cut(s) 37, 401, 489
MfeI CAATTG 1 cut(s) 634
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 3 cut(s) 331, 622, 634
Mly113I GGCGCC 1 cut(s) 555
MlyI GAGTC 1 cut(s) 495
Mph1103I ATGCAT 1 cut(s) 618
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 4 cut(s) 102, 519, 714, 778
MslI CAYNNNNRTG 2 cut(s) 395, 527
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 2 cut(s) 97, 134
MunI CAATTG 1 cut(s) 634
MvaI CCWGG 2 cut(s) 97, 134
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 3 cut(s) 248, 435, 552
NaeI GCCGGC 1 cut(s) 402
NarI GGCGCC 1 cut(s) 555
NdeII GATC 3 cut(s) 39, 283, 450
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 5 cut(s) 113, 246, 394, 526, 606
NlaIV GGNNCC 7 cut(s) 138, 285, 296, 310, 556, 631, 662
NmuCI GTSAC 1 cut(s) 313
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 2 cut(s) 246, 394
PaeI GCATGC 1 cut(s) 246
PciI ACATGT 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 1 cut(s) 492
PkrI GCNGC 3 cut(s) 208, 554, 647
PleI GAGTC 1 cut(s) 494
PluTI GGCGCC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 494
PpuMI RGGWCCY 1 cut(s) 136
PscI ACATGT 1 cut(s) 390
Psp1406I AACGTT 1 cut(s) 720
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 95, 132
PspGI CCWGG 2 cut(s) 95, 132
PspN4I GGNNCC 7 cut(s) 138, 285, 296, 310, 556, 631, 662
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
RseI CAYNNNNRTG 2 cut(s) 395, 527
SaqAI TTAA 4 cut(s) 102, 519, 714, 778
SatI GCNGC 3 cut(s) 207, 553, 646
Sau3AI GATC 3 cut(s) 39, 283, 450
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 2 cut(s) 97, 134
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 4 cut(s) 81, 597, 603, 657
SfcI CTRYAG 1 cut(s) 454
SfoI GGCGCC 1 cut(s) 556
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 395, 527
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SphI GCATGC 1 cut(s) 246
Sse9I AATT 3 cut(s) 331, 622, 634
SsiI CCGC 4 cut(s) 246, 324, 546, 552
SspDI GGCGCC 1 cut(s) 554
SspMI CTAG 3 cut(s) 9, 90, 707
StyD4I CCNGG 2 cut(s) 95, 132
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 2 cut(s) 319, 672
TaiI ACGT 2 cut(s) 500, 723
TaqI TCGA 6 cut(s) 301, 387, 512, 536, 584, 651
TasI AATT 3 cut(s) 331, 622, 634
TauI GCSGC 1 cut(s) 555
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 4 cut(s) 102, 519, 714, 778
Tru9I TTAA 4 cut(s) 102, 519, 714, 778
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 2 cut(s) 206, 645
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 3 cut(s) 17, 183, 747
TspGWI ACGGA 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 136
XceI RCATGY 2 cut(s) 246, 394
XmiI GTMKAC 1 cut(s) 472
XspI CTAG 3 cut(s) 9, 90, 707
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.