RLG00000033510

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014349
Physical Location & Seq
Reverse (-)
28284493 .. 28286543
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033510

Sequence Viewer

Length: 780 bp
ATGAAAGCAGCAGGTTCTTCCTGTGTTCTTCTTTGGCAGATTATCTTCTTTGTTGGTGTAGTTTTGGAGGGCATCAATGGCGCTCAAGCTAATGGTTGGCTTAACGCTCATGCAACTTTCTATGGGGTCAACCAGGACCCTGCCACCCTTGGAGGTGCGTGTGGTTATGGAAATACAATGCTTGCGGGGTTCGGAGTCAACACAGCAGCAGTTAGTGGCATACTTTTCAGAGGTGGCGAGGCATGTGGTGCTTGTTACCAAGTGATGTGTAACTATAAGTTGGATCCAAAGTGGTGCCTTCAACGACGAGCCGTGACTGTATCAGCCACCAATTTCTGCCCCCCAAACAACAATGGAGGGTGGTGCAATCCCCCTCACCACCACTTCGACATGTCTATGCCGGCTTTTCTTCGCATTGCACGACAAGGAAATGAAGGCATTGTTCCTGTGATCTACAGAAGGGTGGCATGTAAACGAAGAGGAGGAGTCCGATTCACGTTGAAAGGGCAATCGAGTTTTAACATGGTGATGATATCGAATGTTGGCGGAAGCGGCGCCGTGAAGGGGGCGTGGATAAGGGGGTCGAGGATGAGAAGCGGCACATGGATACCGATGCACAGGAATTGGGGTGCGAATTGGCAAAGCAGCATCGACCTGAGAAACCAACAACTTTCTTTCAAGCTCACTTTGATTGATGGAAAAGCCATAGTGTTTTACAACGTTGTTCCTTCCACTTGGAGATTTGGACAAACATTTTCATCCCAGAATCAGTTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

260

Amino Acids

28.3

Weight (kDa)

9.97

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 38 - 126 1.9e-07 EXPB1-like domain 1
DPBB_1 PF03330 68 - 152 3.4e-19 Lytic transglycolase
Expansin_C PF01357 163 - 243 1.2e-24 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15370 AT3G15370
fragaria_vesca FvH4_3g20110
malus_domestica MD03G1225900.v1.1 MD11G1245100.v1.1 MD11G1245500.v1.1
prunus_persica Prupe.4G183400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0033911
rosa_laevigata RLG00000033510
rosa_multiflora Rmu_sc0001150.1_g000013 Rmu_sc0016967.1_g000001
rosa_rugosa Rorug05G0143300.1
rosa_samantha Rh5AG234100 Rh5BG234700 Rh5CG265000 Rh5DG241600
rosa_wichuraiana Rw5G021520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2
AccB1I GGYRCC 2 cut(s) 294, 554
AciI CCGC 4 cut(s) 185, 546, 552, 597
AclI AACGTT 1 cut(s) 720
AclWI GGATC 2 cut(s) 278, 291
AcyI GRCGYC 1 cut(s) 555
AfiI CCNNNNNNNGG 1 cut(s) 564
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 3 cut(s) 302, 502, 679
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 2 cut(s) 89, 682
AluI AGCT 2 cut(s) 89, 682
AlwI GGATC 2 cut(s) 278, 291
ApeKI GCWGC 3 cut(s) 8, 206, 645
Asp700I GAANNNNTTC 1 cut(s) 770
AspLEI GCGC 2 cut(s) 83, 557
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 368, 538
AvaII GGWCC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 283
BanI GGYRCC 2 cut(s) 294, 554
BbvI GCAGC 3 cut(s) 20, 218, 657
BccI CCATC 1 cut(s) 689
BceAI ACGGC 2 cut(s) 296, 542
BciT130I CCWGG 1 cut(s) 134
BciVI GTATCC 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 454
BfoI RGCGCY 2 cut(s) 84, 558
BfuAI ACCTGC 1 cut(s) 2
BfuI GTATCC 1 cut(s) 600
BisI GCNGC 5 cut(s) 9, 207, 553, 598, 646
BlsI GCNGC 5 cut(s) 10, 208, 554, 599, 647
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 4 cut(s) 138, 285, 296, 556
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 3 cut(s) 81, 603, 657
BpuEI CTTGAG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 564
Bse118I RCCGGY 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 594, 758
BseLI CCNNNNNNNGG 1 cut(s) 564
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 1 cut(s) 647
BseRI GAGGAG 2 cut(s) 495, 498
BseXI GCAGC 3 cut(s) 20, 218, 657
BshNI GGYRCC 2 cut(s) 294, 554
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 564
Bsp143I GATC 2 cut(s) 283, 450
BspACI CCGC 4 cut(s) 185, 546, 552, 597
BspCNI CTCAG 1 cut(s) 648
BspLI GGNNCC 4 cut(s) 138, 285, 296, 556
BspMI ACCTGC 1 cut(s) 2
BspPI GGATC 2 cut(s) 278, 291
BspT107I GGYRCC 2 cut(s) 294, 554
BsrDI GCAATG 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 2 cut(s) 283, 450
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 472
BstACI GRCGYC 1 cut(s) 555
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 183, 402
BstDEI CTNAG 2 cut(s) 656, 777
BstF5I GGATG 2 cut(s) 594, 758
BstH2I RGCGCY 2 cut(s) 84, 558
BstHHI GCGC 2 cut(s) 83, 557
BstKTI GATC 2 cut(s) 286, 453
BstMBI GATC 2 cut(s) 283, 450
BstMWI GCNNNNNNNGC 3 cut(s) 78, 248, 552
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 3 cut(s) 246, 394, 471
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 454
BstV1I GCAGC 3 cut(s) 20, 218, 657
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuI GTATCC 1 cut(s) 600
BtsCI GGATG 2 cut(s) 594, 758
BveI ACCTGC 1 cut(s) 2
Cac8I GCNNGC 2 cut(s) 183, 402
CfoI GCGC 2 cut(s) 83, 557
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 136
CviAII CATG 6 cut(s) 110, 243, 391, 468, 523, 603
CviJI RGCY 7 cut(s) 89, 100, 311, 326, 404, 682, 704
CviKI_1 RGCY 7 cut(s) 89, 100, 311, 326, 404, 682, 704
DdeI CTNAG 2 cut(s) 656, 777
DinI GGCGCC 1 cut(s) 556
DpnI GATC 2 cut(s) 285, 452
DpnII GATC 2 cut(s) 283, 450
Eam1104I CTCTTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 472
EciI GGCGGA 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 148
Eco32I GATATC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 132
EcoRV GATATC 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 148
EgeI GGCGCC 1 cut(s) 556
EheI GGCGCC 1 cut(s) 556
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 6 cut(s) 113, 246, 394, 471, 526, 606
FatI CATG 6 cut(s) 109, 242, 390, 467, 522, 602
FauI CCCGC 1 cut(s) 178
Fnu4HI GCNGC 5 cut(s) 9, 207, 553, 598, 646
FokI GGATG 2 cut(s) 601, 745
Fsp4HI GCNGC 5 cut(s) 9, 207, 553, 598, 646
GlaI GCGC 2 cut(s) 82, 556
GluI GCNGC 5 cut(s) 9, 207, 553, 598, 646
HaeII RGCGCY 2 cut(s) 84, 558
HapII CCGG 1 cut(s) 401
HhaI GCGC 2 cut(s) 83, 557
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 6 cut(s) 113, 246, 394, 471, 526, 606
Hin6I GCGC 2 cut(s) 81, 555
HinP1I GCGC 2 cut(s) 81, 555
HincII GTYRAC 2 cut(s) 130, 199
HindII GTYRAC 2 cut(s) 130, 199
HinfI GANTC 4 cut(s) 195, 486, 492, 766
HpaII CCGG 1 cut(s) 401
HphI GGTGA 2 cut(s) 368, 538
Hpy166II GTNNAC 3 cut(s) 130, 199, 473
Hpy188I TCNGA 3 cut(s) 194, 230, 491
Hpy8I GTNNAC 3 cut(s) 130, 199, 473
Hpy99I CGWCG 1 cut(s) 309
HpyAV CCTTC 5 cut(s) 308, 428, 453, 556, 738
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 2 cut(s) 497, 720
HpyCH4V TGCA 4 cut(s) 113, 366, 419, 616
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 248, 552
HpyF3I CTNAG 2 cut(s) 656, 777
HpySE526I ACGT 2 cut(s) 497, 720
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 6 cut(s) 113, 246, 394, 471, 526, 606
HspAI GCGC 2 cut(s) 81, 555
KasI GGCGCC 1 cut(s) 554
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Kzo9I GATC 2 cut(s) 283, 450
LpnPI CCDG 9 cut(s) 34, 119, 146, 153, 414, 459, 604, 668, 776
Lsp1109I GCAGC 3 cut(s) 20, 218, 657
LweI GCATC 3 cut(s) 81, 603, 657
MaeII ACGT 2 cut(s) 497, 720
MaeIII GTNAC 3 cut(s) 254, 269, 313
MalI GATC 2 cut(s) 285, 452
MboI GATC 2 cut(s) 283, 450
MboII GAAGA 5 cut(s) 9, 20, 37, 401, 489
MflI RGATCY 1 cut(s) 283
MluCI AATT 3 cut(s) 331, 622, 634
Mly113I GGCGCC 1 cut(s) 555
MlyI GAGTC 2 cut(s) 204, 495
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 9 cut(s) 61, 146, 224, 232, 350, 384, 473, 476, 579
MroNI GCCGGC 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 770
MseI TTAA 2 cut(s) 102, 519
MslI CAYNNNNRTG 2 cut(s) 395, 527
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 78, 248, 552
NaeI GCCGGC 1 cut(s) 402
NarI GGCGCC 1 cut(s) 555
NdeII GATC 2 cut(s) 283, 450
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 6 cut(s) 113, 246, 394, 471, 526, 606
NlaIV GGNNCC 4 cut(s) 138, 285, 296, 556
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 3 cut(s) 246, 394, 471
PciI ACATGT 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 770
PfeI GAWTC 2 cut(s) 492, 766
PkrI GCNGC 5 cut(s) 10, 208, 554, 599, 647
PleI GAGTC 2 cut(s) 203, 494
PluTI GGCGCC 1 cut(s) 558
PpsI GAGTC 2 cut(s) 203, 494
PpuMI RGGWCCY 1 cut(s) 136
PscI ACATGT 1 cut(s) 390
Psp1406I AACGTT 1 cut(s) 720
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 4 cut(s) 138, 285, 296, 556
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 1 cut(s) 283
RseI CAYNNNNRTG 2 cut(s) 395, 527
SaqAI TTAA 2 cut(s) 102, 519
SatI GCNGC 5 cut(s) 9, 207, 553, 598, 646
Sau3AI GATC 2 cut(s) 283, 450
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 2 cut(s) 204, 495
ScrFI CCNGG 1 cut(s) 134
SetI ASST 8 cut(s) 16, 91, 157, 235, 500, 657, 684, 723
SfaNI GCATC 3 cut(s) 81, 603, 657
SfcI CTRYAG 1 cut(s) 454
SfoI GGCGCC 1 cut(s) 556
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 395, 527
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 331, 622, 634
SsiI CCGC 4 cut(s) 185, 546, 552, 597
SspDI GGCGCC 1 cut(s) 554
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 2 cut(s) 500, 723
TaqI TCGA 5 cut(s) 387, 512, 536, 584, 651
TasI AATT 3 cut(s) 331, 622, 634
TauI GCSGC 2 cut(s) 555, 600
TfiI GAWTC 2 cut(s) 492, 766
Tru1I TTAA 2 cut(s) 102, 519
Tru9I TTAA 2 cut(s) 102, 519
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 3 cut(s) 8, 206, 645
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 3 cut(s) 17, 447, 747
VpaK11BI GGWCC 1 cut(s) 136
XceI RCATGY 3 cut(s) 246, 394, 471
XmnI GAANNNNTTC 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.