Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002624

Physical Location & Seq

Genomic Coordinates Reverse (-)

5196522 .. 5200394

Gene Structure 3873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGTCAAAGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTTCTCGATACTTTTGGTTCTCGTTTTTCTCTTGATGACATTGCCGCTGCTTACTGCCAAGCTAGCCAGAATGTCGATGTAGCTGGTGAGATTCTCTCTGCAATGGCTGAAAAGACGCCTCAATGTGACCAAGTTGAAATGAAGACAGCAACCTCAAAACCAACTCAGGTCTATGTTCCTAAGGAAGTTCCACGACAAGAGGATAGCAAAGCGAAAGTATGGAGGCCGAAGAGAAATTCTATATCAAATGGTACTGTTTCAAGTGTTATTGGTAAGGAGTATGCTAGAACCAGGCCTATATCAAATGCTCCCAAAGAAGCAACTAAACCATTGAAGATAAACTCAAGGGATATTCCAGAAACTGAGATATGGAGTGAAGAAATGCGAAAAAGTAACGAGGGAAAGATAAGCAGGGCTCCAACTGATGTTGAGGAATTTATTGTTAAGATGCTTGGAGAAGGTTTTCAAGCTAGCCAAGAAGTCATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCTTGACTTTTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTTATGTCAAAAGTTGATCCTCAAAGACAATCTACATCCTGCAACCAAATGGAACTACAAAAAATTTCTCAGAGTGTTGGAGCAAGAACCTTTACAGGTTCACAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTGTTCTCAGGTGCGGAAAGATATGTGGACAAACCAAAAGTAACTCGACATTTTGGAGAAAGGAGACCTGGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAAGACCCTTTTCAAGAGAGAGTAGTTGCTGTGAAACAATCGTCCAATACATCTAAAGAAGATGACGATGAAAATGAATTTAAGGCACATCGTAAAGCAGTACGCGAGCATTTGAATCAGATGAAAGAATATTATGGAGCTGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGGACACTTTTTTGGACAAAAAGCTCGAGAAGCAGATGACAAATCTGTAGCAAAGATGATTGACGTCAATCAAGAAGATGATTCAACTTACGAGGAAGACGAGGTAGTGACAGTAAATATGAATGAACACGAAGCAAAAGAAGCTCTTCGTCTTCTCAAGCGCCAACTTATTTACTTCTCTGGCATTTCATCTTTCAAGTACCTCAGAGTCCAATTGGGTGAGAAGAAGGAAGATTTCAAGAGCAAACGAAAGCATATCGTAAAGCTGCTGGAGGGAGAATCCATTCCTTGGACTGAAGAAGATGGCGGCCTCGTGATAATGATTCGGGTTGATGAGATTGACCCCAAGAAATTGAGTTTTGCCAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771

Protein Analysis

490

Amino Acids

55.16

Weight (kDa)

6.53

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_At5g58720	PF24767	14 - 54	1.3e-07	At5g58720 UBA-like domain
DUF1771	PF08590	329 - 390	3.9e-12	Domain of unknown function (DUF1771)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15390 AT3G15390 AT3G15390
fragaria_vesca	FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430
malus_domestica	MD00G1089400.v1.1
prunus_persica	Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1
pyrus_communis	pycom11g21510
rosa_chinensis	RchiOBHm_Chr5g0034321
rosa_laevigata	RLG00000033540
rosa_multiflora	Rmu_sc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00045920 Rroxscaffold_1G00045950
rosa_rugosa	Rorug05G0145300 Rorug05G0145300
rosa_samantha	Rh5AG236900 Rh5BG237400 Rh5CG267200 Rh5DG244900
rosa_wichuraiana	Rw0G022190 Rw5G021270 Rw5G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1167
AccB7I	CCANNNNNTGG	1 cut(s)	1389
AccII	CGCG	1 cut(s)	1008
AciI	CCGC	4 cut(s)	102, 564, 815, 1407
AclWI	GGATC	2 cut(s)	26, 659
AcsI	RAATTY	5 cut(s)	292, 491, 636, 711, 980
AcuI	CTGAAG	1 cut(s)	1416
AcyI	GRCGYC	2 cut(s)	173, 1164
AfaI	GTAC	4 cut(s)	310, 586, 1005, 1301
AfiI	CCNNNNNNNGG	1 cut(s)	1389
AjnI	CCWGG	3 cut(s)	347, 546, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
Alw21I	GWGCWC	1 cut(s)	1084
Alw26I	GTCTC	1 cut(s)	859
AlwI	GGATC	2 cut(s)	26, 659
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	1125
AoxI	GGCC	3 cut(s)	281, 350, 1408
ApeKI	GCWGC	4 cut(s)	104, 1043, 1046, 1366
ApoI	RAATTY	5 cut(s)	292, 491, 636, 711, 980
Asp700I	GAANNNNTTC	4 cut(s)	519, 540, 1245, 1383
AspLEI	GCGC	1 cut(s)	1263
AsuHPI	GGTGA	3 cut(s)	155, 536, 1331
AsuII	TTCGAA	1 cut(s)	23
AsuNHI	GCTAGC	2 cut(s)	119, 527
AvaI	CYCGRG	1 cut(s)	1125
AxyI	CCTNAGG	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	475
BauI	CACGAG	2 cut(s)	1091, 1412
BbsI	GAAGAC	4 cut(s)	206, 912, 1203, 1244
Bbv12I	GWGCWC	1 cut(s)	1084
BbvI	GCAGC	4 cut(s)	91, 1030, 1033, 1353
BccI	CCATC	1 cut(s)	1397
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	3 cut(s)	349, 548, 870
BcoDI	GTCTC	1 cut(s)	859
BfaI	CTAG	3 cut(s)	120, 342, 528
BfmI	CTRYAG	2 cut(s)	1047, 1146
BfoI	RGCGCY	1 cut(s)	1264
BisI	GCNGC	6 cut(s)	102, 105, 1044, 1047, 1367, 1408
BlsI	GCNGC	6 cut(s)	103, 106, 1045, 1048, 1368, 1409
Bme1390I	CCNGG	3 cut(s)	349, 548, 870
BmeT110I	CYCGRG	1 cut(s)	1125
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	3 cut(s)	349, 548, 870
BmsI	GCATC	1 cut(s)	495
BmtI	GCTAGC	2 cut(s)	123, 531
BpiI	GAAGAC	4 cut(s)	206, 912, 1203, 1244
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	2 cut(s)	891, 1391
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	2 cut(s)	385, 1241
BsaHI	GRCGYC	2 cut(s)	173, 1164
BsaI	GGTCTC	1 cut(s)	859
BsaJI	CCNNGG	1 cut(s)	1388
Bsc4I	CCNNNNNNNGG	1 cut(s)	1389
Bse21I	CCTNAGG	1 cut(s)	237
Bse3DI	GCAATG	2 cut(s)	96, 165
BseBI	CCWGG	3 cut(s)	349, 548, 870
BseDI	CCNNGG	1 cut(s)	1388
BseGI	GGATG	1 cut(s)	683
BseLI	CCNNNNNNNGG	1 cut(s)	1389
BseMI	GCAATG	2 cut(s)	96, 165
BseMII	CTCAG	5 cut(s)	236, 411, 731, 822, 1318
BseXI	GCAGC	4 cut(s)	91, 1030, 1033, 1353
Bsh1236I	CGCG	1 cut(s)	1008
BshFI	GGCC	3 cut(s)	283, 352, 1410
BsiHKAI	GWGCWC	1 cut(s)	1084
BsiHKCI	CYCGRG	1 cut(s)	1125
BslFI	GGGAC	1 cut(s)	1116
BslI	CCNNNNNNNGG	1 cut(s)	1389
BsmAI	GTCTC	1 cut(s)	859
BsmFI	GGGAC	1 cut(s)	1116
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	3 cut(s)	283, 352, 1410
Bso31I	GGTCTC	1 cut(s)	859
BsoBI	CYCGRG	1 cut(s)	1125
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	475, 1084
Bsp143I	GATC	2 cut(s)	31, 664
BspACI	CCGC	4 cut(s)	102, 564, 815, 1407
BspANI	GGCC	3 cut(s)	283, 352, 1410
BspCNI	CTCAG	5 cut(s)	235, 412, 730, 821, 1317
BspFNI	CGCG	1 cut(s)	1008
BspLI	GGNNCC	1 cut(s)	474
BspMAI	CTGCAG	1 cut(s)	1051
BspOI	GCTAGC	2 cut(s)	123, 531
BspPI	GGATC	2 cut(s)	26, 659
BspQI	GCTCTTC	2 cut(s)	25, 1251
BspT104I	TTCGAA	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	859
BsrDI	GCAATG	2 cut(s)	96, 165
BssECI	CCNNGG	1 cut(s)	1388
BssMI	GATC	2 cut(s)	31, 664
BssNI	GRCGYC	2 cut(s)	173, 1164
BssSI	CACGAG	2 cut(s)	1091, 1412
BssT1I	CCWWGG	1 cut(s)	1388
Bst2BI	CACGAG	2 cut(s)	1091, 1412
Bst2UI	CCWGG	3 cut(s)	349, 548, 870
Bst4CI	ACNGT	2 cut(s)	313, 1213
Bst6I	CTCTTC	4 cut(s)	25, 281, 575, 1251
BstACI	GRCGYC	2 cut(s)	173, 1164
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	5 cut(s)	16, 121, 529, 1010, 1080
BstDEI	CTNAG	7 cut(s)	222, 237, 420, 717, 768, 808, 1304
BstF5I	GGATG	1 cut(s)	683
BstFNI	CGCG	1 cut(s)	1008
BstH2I	RGCGCY	1 cut(s)	1264
BstHHI	GCGC	1 cut(s)	1263
BstKTI	GATC	2 cut(s)	34, 667
BstMAI	GTCTC	1 cut(s)	859
BstMBI	GATC	2 cut(s)	31, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 1052, 1130, 1241
BstNI	CCWGG	3 cut(s)	349, 548, 870
BstSCI	CCNGG	3 cut(s)	347, 546, 868
BstSFI	CTRYAG	2 cut(s)	1047, 1146
BstUI	CGCG	1 cut(s)	1008
BstV1I	GCAGC	4 cut(s)	91, 1030, 1033, 1353
BstV2I	GAAGAC	4 cut(s)	206, 912, 1203, 1244
BstXI	CCANNNNNNTGG	1 cut(s)	554
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	283, 352, 1410
BtsCI	GGATG	1 cut(s)	683
Cac8I	GCNNGC	5 cut(s)	16, 121, 529, 1010, 1080
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	1 cut(s)	1263
CseI	GACGC	1 cut(s)	181
CsiI	ACCWGGT	1 cut(s)	546
Csp6I	GTAC	4 cut(s)	309, 585, 1004, 1300
CviQI	GTAC	4 cut(s)	309, 585, 1004, 1300
DdeI	CTNAG	7 cut(s)	222, 237, 420, 717, 768, 808, 1304
DpnI	GATC	2 cut(s)	33, 666
DpnII	GATC	2 cut(s)	31, 664
DraI	TTTAAA	1 cut(s)	895
Eam1104I	CTCTTC	4 cut(s)	25, 281, 575, 1251
EarI	CTCTTC	4 cut(s)	25, 281, 575, 1251
Eco130I	CCWWGG	1 cut(s)	1388
Eco147I	AGGCCT	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	475
Eco31I	GGTCTC	1 cut(s)	859
Eco57I	CTGAAG	1 cut(s)	1416
Eco81I	CCTNAGG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	1125
EcoRII	CCWGG	3 cut(s)	347, 546, 868
EcoT14I	CCWWGG	1 cut(s)	1388
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	1388
FalI	AAGNNNNNCTT	4 cut(s)	1091, 1123, 1230, 1262
FaqI	GGGAC	1 cut(s)	1116
Fnu4HI	GCNGC	6 cut(s)	102, 105, 1044, 1047, 1367, 1408
FokI	GGATG	1 cut(s)	670
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	6 cut(s)	102, 105, 1044, 1047, 1367, 1408
FspBI	CTAG	3 cut(s)	120, 342, 528
GlaI	GCGC	1 cut(s)	1262
GluI	GCNGC	6 cut(s)	102, 105, 1044, 1047, 1367, 1408
GsuI	CTGGAG	2 cut(s)	891, 1391
HaeII	RGCGCY	1 cut(s)	1264
HaeIII	GGCC	3 cut(s)	283, 352, 1410
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	1263
Hin1I	GRCGYC	2 cut(s)	173, 1164
Hin6I	GCGC	1 cut(s)	1261
HinP1I	GCGC	1 cut(s)	1261
HindIII	AAGCTT	2 cut(s)	46, 798
HinfI	GANTC	8 cut(s)	38, 148, 1018, 1089, 1181, 1308, 1379, 1423
HphI	GGTGA	3 cut(s)	155, 536, 1331
Hpy166II	GTNNAC	2 cut(s)	749, 829
Hpy188I	TCNGA	4 cut(s)	610, 720, 1023, 1307
Hpy8I	GTNNAC	2 cut(s)	749, 829
HpyAV	CCTTC	4 cut(s)	509, 749, 1093, 1321
HpyCH4III	ACNGT	2 cut(s)	313, 1213
HpyCH4IV	ACGT	1 cut(s)	1164
HpyCH4V	TGCA	4 cut(s)	14, 158, 690, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 1052, 1130, 1241
HpyF3I	CTNAG	7 cut(s)	222, 237, 420, 717, 768, 808, 1304
HpySE526I	ACGT	1 cut(s)	1164
Hsp92I	GRCGYC	2 cut(s)	173, 1164
HspAI	GCGC	1 cut(s)	1261
Kzo9I	GATC	2 cut(s)	31, 664
LguI	GCTCTTC	2 cut(s)	25, 1251
LmnI	GCTCC	4 cut(s)	370, 478, 728, 1040
Lsp1109I	GCAGC	4 cut(s)	91, 1030, 1033, 1353
LweI	GCATC	1 cut(s)	495
MabI	ACCWGGT	1 cut(s)	546
MaeI	CTAG	3 cut(s)	120, 342, 528
MaeII	ACGT	1 cut(s)	1164
MaeIII	GTNAC	4 cut(s)	182, 449, 841, 1207
MalI	GATC	2 cut(s)	33, 666
MboI	GATC	2 cut(s)	31, 664
MfeI	CAATTG	1 cut(s)	1313
MhlI	GDGCHC	2 cut(s)	475, 1084
MluCI	AATT	7 cut(s)	292, 491, 636, 711, 980, 1313, 1451
MlyI	GAGTC	2 cut(s)	1083, 1317
MmeI	TCCRAC	3 cut(s)	500, 613, 706
MroXI	GAANNNNTTC	4 cut(s)	519, 540, 1245, 1383
MseI	TTAA	3 cut(s)	501, 894, 984
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	3 cut(s)	349, 548, 870
MunI	CAATTG	1 cut(s)	1313
Mva1269I	GAATGC	1 cut(s)	1055
MvaI	CCWGG	3 cut(s)	349, 548, 870
MvnI	CGCG	1 cut(s)	1008
MwoI	GCNNNNNNNGC	4 cut(s)	120, 1052, 1130, 1241
NdeII	GATC	2 cut(s)	31, 664
NheI	GCTAGC	2 cut(s)	119, 527
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	2 cut(s)	182, 1207
NspV	TTCGAA	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	1125
PceI	AGGCCT	1 cut(s)	352
PciSI	GCTCTTC	2 cut(s)	25, 1251
PcsI	WCGNNNNNNNCGW	1 cut(s)	1197
PctI	GAATGC	1 cut(s)	1055
PdmI	GAANNNNTTC	4 cut(s)	519, 540, 1245, 1383
PfeI	GAWTC	6 cut(s)	38, 148, 1018, 1181, 1379, 1423
PflMI	CCANNNNNTGG	1 cut(s)	1389
PkrI	GCNGC	6 cut(s)	103, 106, 1045, 1048, 1368, 1409
PleI	GAGTC	2 cut(s)	1083, 1316
PpsI	GAGTC	2 cut(s)	1083, 1316
Psp6I	CCWGG	3 cut(s)	347, 546, 868
PspGI	CCWGG	3 cut(s)	347, 546, 868
PspN4I	GGNNCC	1 cut(s)	474
PstI	CTGCAG	1 cut(s)	1051
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	4 cut(s)	310, 586, 1005, 1301
RsaNI	GTAC	4 cut(s)	309, 585, 1004, 1300
SapI	GCTCTTC	2 cut(s)	25, 1251
SaqAI	TTAA	3 cut(s)	501, 894, 984
SatI	GCNGC	6 cut(s)	102, 105, 1044, 1047, 1367, 1408
Sau3AI	GATC	2 cut(s)	31, 664
SchI	GAGTC	2 cut(s)	1083, 1317
ScrFI	CCNGG	3 cut(s)	349, 548, 870
SduI	GDGCHC	2 cut(s)	475, 1084
SexAI	ACCWGGT	1 cut(s)	546
SfaNI	GCATC	1 cut(s)	495
SfcI	CTRYAG	2 cut(s)	1047, 1146
Sfr274I	CTCGAG	1 cut(s)	1125
SfuI	TTCGAA	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	1125
SmlI	CTYRAG	3 cut(s)	400, 1125, 1256
SmoI	CTYRAG	3 cut(s)	400, 1125, 1256
Sse9I	AATT	7 cut(s)	292, 491, 636, 711, 980, 1313, 1451
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	4 cut(s)	102, 564, 815, 1407
SspI	AATATT	1 cut(s)	1034
SspMI	CTAG	3 cut(s)	120, 342, 528
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	3 cut(s)	347, 546, 868
StyI	CCWWGG	1 cut(s)	1388
TaaI	ACNGT	2 cut(s)	313, 1213
TaiI	ACGT	1 cut(s)	1167
TaqI	TCGA	5 cut(s)	23, 63, 132, 847, 1126
TasI	AATT	7 cut(s)	292, 491, 636, 711, 980, 1313, 1451
TauI	GCSGC	2 cut(s)	104, 1410
TfiI	GAWTC	6 cut(s)	38, 148, 1018, 1181, 1379, 1423
Tru1I	TTAA	3 cut(s)	501, 894, 984
Tru9I	TTAA	3 cut(s)	501, 894, 984
TseFI	GTSAC	2 cut(s)	182, 1207
TseI	GCWGC	4 cut(s)	104, 1043, 1046, 1366
Tsp45I	GTSAC	2 cut(s)	182, 1207
TspDTI	ATGAA	8 cut(s)	212, 660, 987, 993, 1040, 1235, 1239, 1278
TspGWI	ACGGA	1 cut(s)	602
Van91I	CCANNNNNTGG	1 cut(s)	1389
XapI	RAATTY	5 cut(s)	292, 491, 636, 711, 980
XhoI	CTCGAG	1 cut(s)	1125
XmnI	GAANNNNTTC	4 cut(s)	519, 540, 1245, 1383
XspI	CTAG	3 cut(s)	120, 342, 528
ZraI	GACGTC	1 cut(s)	1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.