Rw5G021270

DUF1771

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
28540897 .. 28546446
5550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021270.1

Sequence Viewer

Length: 1515 bp
ATGGAAGCGTCTACCTTACCTGATGCAGGCCTTGGTAAAGAGAAAAAGGACTTGACATATTTGCTTGATGTGTTTAGCTCTAGTTGTTCTCTTGAGGACATTGCCTCTGCATATGTCAAGGCTAGGCACAATGTAAAAATGGCTGGTGAAATTCTTTGCACGTCACATTTATGTTCCTCAGATGGTGCTAGTTCATCAAAGGCTATATTTGAGGGTGCAAGTGATACATTTTCAGATGCCCTGTCACCTCAAGTGCAGTGTACAAGCGTAGTTCCTGCAACACTGTCATCTGTCAGCATTCTTCAGAAGACCTCTAATGGAGTTGGCAATACCAGAGCATCAAAGTCAAAAAGACCTCCTCTATCAGTGGGTACCGTTTCTGGTGTGATAGGAAAAGACTACAGTAGGCAGAAGACATCAACAAATGAATCTGCTGAAATGCCAAAACCATTAAAATTAGAATTGAAAGAAATGCCTTTCTCTGATTTATCTAGTGAAGAAGTCCAATCAAGCATGACAGCTAACAACAGTAAGATGCACGCCGATATTGAAGAATTTCTGTTTGAAATGCTTGGAGATGGCTTTAAACTTAATATGAATGTGATCAAAGAAGTTCTCAGCTTTTGTGGATATGATAGGGAAAAGAGCATGGAGAAACTTCTTTTTATGTCAGCATCAACCTTGGAAAATTCTGATGATCTTGTTAGTTTAGAAAGTTCAAAGTCTACAGAGAAGTGTTCAGATCAACATTCTGCTCGTAGTAATGGATCTAGAAATGCAAGAAATCCAATAGAATGTGGGTCTACTGACTCTGCTCTTGAGAAAGAGTTATTTGAAGCATTGTTTGGTGTTCCTGAAAGAATGGAACAAGCACCTAAAGTAAATCTCCCATCAAGGGGACTGAAGAGAAATGGATATAGGGGATTTCATGGTAATTTGGTGGTTGAACCTTTTAGAGACACAATTATAGAAAGCAAAATTGCGACAGTGGTACGACGAGAAGTCACCAGGGCAGAATCTGAGGATGTTGAGAATAGCTATGAGGTTCTACGTAATTCTGTGAAGGAATATTGGATTACAATGAAGGAGTATTACAAAACTGCTTTAGAAGCATTTTCTGAGGGTGATCATGTACGTGCAGATAAATTTTTCGAGAAGGGCCATTTCTTTTGCAGAAAGGCACGGGAAGCAGATGACAAATCCACTGAAAAACTTCTTCAGACTAGAGATGATGATGATTCTGTGTCTCTTGACTTGCATGATCATGAACCCAAGGAAGCTATACGTACTCTAAGGTTTGAATTAACCTATCTCTCCGGCATGCCAGCTTTCAAGTACCTTAGGATCATAGTGGGAAGCAATGATGAAGATACCACTCGAGGAGCCCGGAGAAGACTGATTATAAAGCAACTGGAGAAGGAATCGATCAAATGGACTGAGGAGGAGAATGGGCAGATAATATTGATCCGACTCGATGTGATTGACCCGAAACGCTTGAGCTTCTCAAAAAAATAG

Protein Analysis

504

Amino Acids

56.38

Weight (kDa)

5.63

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_At5g58720 PF24767 13 - 54 8e-07 At5g58720 UBA-like domain
DUF1771 PF08590 347 - 409 8.5e-12 Domain of unknown function (DUF1771)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1403
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 371
AccI GTMKAC 3 cut(s) 11, 725, 803
AclWI GGATC 3 cut(s) 775, 1352, 1459
AcsI RAATTY 4 cut(s) 150, 554, 688, 1145
AcuI CTGAAG 3 cut(s) 287, 923, 1202
AfaI GTAC 6 cut(s) 262, 373, 993, 1134, 1288, 1337
AfiI CCNNNNNNNGG 3 cut(s) 26, 895, 896
AgsI TTSAA 8 cut(s) 466, 551, 566, 720, 836, 947, 1301, 1333
AhdI GACNNNNNGTC 1 cut(s) 1001
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 1 cut(s) 1007
AjuI GAANNNNNNNTTGG 2 cut(s) 828, 860
AluBI AGCT 7 cut(s) 78, 521, 621, 1038, 1280, 1328, 1500
AluI AGCT 7 cut(s) 78, 521, 621, 1038, 1280, 1328, 1500
Alw26I GTCTC 2 cut(s) 951, 1251
AlwI GGATC 3 cut(s) 775, 1352, 1459
AlwNI CAGNNNCTG 1 cut(s) 1019
Ama87I CYCGRG 1 cut(s) 1377
AoxI GGCC 2 cut(s) 28, 1159
ApoI RAATTY 4 cut(s) 150, 554, 688, 1145
Asp700I GAANNNNTTC 2 cut(s) 555, 1212
Asp718I GGTACC 1 cut(s) 371
AspS9I GGNCC 1 cut(s) 1159
AsuC2I CCSGG 1 cut(s) 1387
AsuHPI GGTGA 4 cut(s) 158, 237, 997, 1136
AvaI CYCGRG 1 cut(s) 1377
AxyI CCTNAGG 1 cut(s) 1340
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 1387
BarI GAAGNNNNNNTAC 2 cut(s) 1076, 1108
BbsI GAAGAC 3 cut(s) 314, 419, 1399
BccI CCATC 3 cut(s) 176, 572, 898
BciT130I CCWGG 1 cut(s) 1009
BclI TGATCA 3 cut(s) 603, 1126, 1261
BcnI CCSGG 1 cut(s) 1387
BcoDI GTCTC 2 cut(s) 951, 1251
BfaI CTAG 6 cut(s) 81, 123, 189, 492, 771, 1224
BfmI CTRYAG 2 cut(s) 400, 726
Bme1390I CCNGG 2 cut(s) 1009, 1387
BmeRI GACNNNNNGTC 1 cut(s) 1001
BmeT110I CYCGRG 1 cut(s) 1377
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 1159
BmiI GGNNCC 2 cut(s) 373, 1384
BmrFI CCNGG 2 cut(s) 1009, 1387
BmsI GCATC 5 cut(s) 13, 226, 347, 525, 683
BpiI GAAGAC 3 cut(s) 314, 419, 1399
BpmI CTGGAG 1 cut(s) 1433
BpuEI CTTGAG 3 cut(s) 113, 234, 839
BpuMI CCSGG 1 cut(s) 1387
Bsa29I ATCGAT 1 cut(s) 1424
BsaAI YACGTR 3 cut(s) 1052, 1136, 1286
BsaJI CCNNGG 4 cut(s) 31, 681, 1008, 1272
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 895, 896
Bse1I ACTGG 1 cut(s) 1416
Bse21I CCTNAGG 1 cut(s) 1340
Bse3DI GCAATG 2 cut(s) 99, 1366
BseBI CCWGG 1 cut(s) 1009
BseCI ATCGAT 1 cut(s) 1424
BseDI CCNNGG 4 cut(s) 31, 681, 1008, 1272
BseGI GGATG 1 cut(s) 1030
BseLI CCNNNNNNNGG 3 cut(s) 26, 895, 896
BseMI GCAATG 2 cut(s) 99, 1366
BseMII CTCAG 5 cut(s) 192, 631, 1011, 1110, 1428
BseNI ACTGG 1 cut(s) 1416
BseRI GAGGAG 4 cut(s) 348, 1395, 1454, 1457
BsgI GTGCAG 2 cut(s) 275, 1158
BshFI GGCC 2 cut(s) 30, 1161
BshNI GGYRCC 1 cut(s) 371
BshVI ATCGAT 1 cut(s) 1424
BsiHKCI CYCGRG 1 cut(s) 1377
BsiSI CCGG 2 cut(s) 1317, 1387
BslFI GGGAC 1 cut(s) 912
BslI CCNNNNNNNGG 3 cut(s) 26, 895, 896
BsmAI GTCTC 2 cut(s) 951, 1251
BsmFI GGGAC 1 cut(s) 912
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 2 cut(s) 30, 1161
BsoBI CYCGRG 1 cut(s) 1377
Bsp1286I GDGCHC 1 cut(s) 1387
Bsp1407I TGTACA 1 cut(s) 260
Bsp143I GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
BspANI GGCC 2 cut(s) 30, 1161
BspCNI CTCAG 5 cut(s) 191, 630, 1012, 1111, 1429
BspDI ATCGAT 1 cut(s) 1424
BspHI TCATGA 1 cut(s) 1264
BspLI GGNNCC 2 cut(s) 373, 1384
BspPI GGATC 3 cut(s) 775, 1352, 1459
BspT107I GGYRCC 1 cut(s) 371
BsrDI GCAATG 2 cut(s) 99, 1366
BsrGI TGTACA 1 cut(s) 260
BsrI ACTGG 1 cut(s) 1416
BssECI CCNNGG 4 cut(s) 31, 681, 1008, 1272
BssMI GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
BssT1I CCWWGG 3 cut(s) 31, 681, 1272
Bst2UI CCWGG 1 cut(s) 1009
Bst4CI ACNGT 5 cut(s) 285, 376, 404, 530, 988
Bst6I CTCTTC 1 cut(s) 899
BstAUI TGTACA 1 cut(s) 260
BstBAI YACGTR 3 cut(s) 1052, 1136, 1286
BstC8I GCNNGC 4 cut(s) 28, 540, 1322, 1326
BstDEI CTNAG 7 cut(s) 178, 617, 1020, 1119, 1292, 1340, 1437
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 1030
BstKTI GATC 9 cut(s) 606, 700, 745, 770, 1129, 1264, 1347, 1428, 1467
BstMAI GTCTC 2 cut(s) 951, 1251
BstMBI GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
BstMWI GCNNNNNNNGC 2 cut(s) 1109, 1187
BstNI CCWGG 1 cut(s) 1009
BstNSI RCATGY 1 cut(s) 1324
BstSCI CCNGG 2 cut(s) 1007, 1385
BstSFI CTRYAG 2 cut(s) 400, 726
BstSNI TACGTA 2 cut(s) 1052, 1286
BstV2I GAAGAC 3 cut(s) 314, 419, 1399
BstX2I RGATCY 1 cut(s) 767
BstYI RGATCY 1 cut(s) 767
Bsu15I ATCGAT 1 cut(s) 1424
Bsu36I CCTNAGG 1 cut(s) 1340
BsuRI GGCC 2 cut(s) 30, 1161
BsuTUI ATCGAT 1 cut(s) 1424
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 1030
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 5 cut(s) 263, 281, 372, 993, 1203
Cac8I GCNNGC 4 cut(s) 28, 540, 1322, 1326
CaiI CAGNNNCTG 1 cut(s) 1019
CciI TCATGA 1 cut(s) 1264
Cfr13I GGNCC 1 cut(s) 1159
ClaI ATCGAT 1 cut(s) 1424
Csp6I GTAC 6 cut(s) 261, 372, 992, 1133, 1287, 1336
CviAII CATG 7 cut(s) 514, 649, 929, 1130, 1259, 1265, 1321
CviQI GTAC 6 cut(s) 261, 372, 992, 1133, 1287, 1336
DdeI CTNAG 7 cut(s) 178, 617, 1020, 1119, 1292, 1340, 1437
DpnI GATC 9 cut(s) 605, 699, 744, 769, 1128, 1263, 1346, 1427, 1466
DpnII GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
DraI TTTAAA 1 cut(s) 586
DriI GACNNNNNGTC 1 cut(s) 1001
Eam1104I CTCTTC 1 cut(s) 899
Eam1105I GACNNNNNGTC 1 cut(s) 1001
EarI CTCTTC 1 cut(s) 899
Eco105I TACGTA 2 cut(s) 1052, 1286
Eco130I CCWWGG 3 cut(s) 31, 681, 1272
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 1387
Eco57I CTGAAG 3 cut(s) 287, 923, 1202
Eco81I CCTNAGG 1 cut(s) 1340
Eco88I CYCGRG 1 cut(s) 1377
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 1007
EcoT14I CCWWGG 3 cut(s) 31, 681, 1272
EcoT38I GRGCYC 1 cut(s) 1387
ErhI CCWWGG 3 cut(s) 31, 681, 1272
FaeI CATG 7 cut(s) 517, 652, 932, 1133, 1262, 1268, 1324
FaqI GGGAC 1 cut(s) 912
FatI CATG 7 cut(s) 513, 648, 928, 1129, 1258, 1264, 1320
FauNDI CATATG 1 cut(s) 112
FbaI TGATCA 3 cut(s) 603, 1126, 1261
FblI GTMKAC 3 cut(s) 11, 725, 803
FokI GGATG 1 cut(s) 1037
FriOI GRGCYC 1 cut(s) 1387
FspBI CTAG 6 cut(s) 81, 123, 189, 492, 771, 1224
GsuI CTGGAG 1 cut(s) 1433
HaeIII GGCC 2 cut(s) 30, 1161
HapII CCGG 2 cut(s) 1317, 1387
Hin1II CATG 7 cut(s) 517, 652, 932, 1133, 1262, 1268, 1324
HinfI GANTC 6 cut(s) 428, 809, 1016, 1238, 1421, 1470
HpaII CCGG 2 cut(s) 1317, 1387
HphI GGTGA 4 cut(s) 158, 237, 997, 1136
Hpy166II GTNNAC 4 cut(s) 12, 261, 726, 804
Hpy188III TCNNGA 7 cut(s) 92, 771, 818, 854, 1153, 1250, 1265
Hpy8I GTNNAC 4 cut(s) 12, 261, 726, 804
Hpy99I CGWCG 1 cut(s) 999
HpyAV CCTTC 4 cut(s) 1057, 1078, 1150, 1411
HpyCH4III ACNGT 5 cut(s) 285, 376, 404, 530, 988
HpyCH4IV ACGT 4 cut(s) 161, 1051, 1135, 1285
HpyF10VI GCNNNNNNNGC 2 cut(s) 1109, 1187
HpyF3I CTNAG 7 cut(s) 178, 617, 1020, 1119, 1292, 1340, 1437
HpySE526I ACGT 4 cut(s) 161, 1051, 1135, 1285
Hsp92II CATG 7 cut(s) 517, 652, 932, 1133, 1262, 1268, 1324
KpnI GGTACC 1 cut(s) 375
Ksp22I TGATCA 3 cut(s) 603, 1126, 1261
Kzo9I GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
LmnI GCTCC 1 cut(s) 1382
LweI GCATC 5 cut(s) 13, 226, 347, 525, 683
MaeI CTAG 6 cut(s) 81, 123, 189, 492, 771, 1224
MaeII ACGT 4 cut(s) 161, 1051, 1135, 1285
MaeIII GTNAC 3 cut(s) 162, 243, 1003
MalI GATC 9 cut(s) 605, 699, 744, 769, 1128, 1263, 1346, 1427, 1466
MboI GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
MboII GAAGA 9 cut(s) 293, 319, 424, 509, 563, 916, 1208, 1379, 1404
MflI RGATCY 1 cut(s) 767
MhlI GDGCHC 1 cut(s) 1387
MlyI GAGTC 2 cut(s) 803, 1464
MmeI TCCRAC 1 cut(s) 1492
MroXI GAANNNNTTC 2 cut(s) 555, 1212
MseI TTAA 4 cut(s) 452, 585, 591, 1304
MslI CAYNNNNRTG 3 cut(s) 169, 1134, 1263
MspI CCGG 2 cut(s) 1317, 1387
MspR9I CCNGG 2 cut(s) 1009, 1387
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 1 cut(s) 1009
MwoI GCNNNNNNNGC 2 cut(s) 1109, 1187
NciI CCSGG 1 cut(s) 1387
NdeI CATATG 1 cut(s) 112
NdeII GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
NlaIII CATG 7 cut(s) 517, 652, 932, 1133, 1262, 1268, 1324
NlaIV GGNNCC 2 cut(s) 373, 1384
NmuCI GTSAC 3 cut(s) 162, 243, 1003
NspI RCATGY 1 cut(s) 1324
PaeI GCATGC 1 cut(s) 1324
PaeR7I CTCGAG 1 cut(s) 1377
PagI TCATGA 1 cut(s) 1264
PceI AGGCCT 1 cut(s) 30
PctI GAATGC 1 cut(s) 297
PdmI GAANNNNTTC 2 cut(s) 555, 1212
PfeI GAWTC 4 cut(s) 428, 1016, 1238, 1421
PleI GAGTC 2 cut(s) 803, 1464
PpsI GAGTC 2 cut(s) 803, 1464
Ppu21I YACGTR 3 cut(s) 1052, 1136, 1286
PsiI TTATAA 1 cut(s) 1403
Psp6I CCWGG 1 cut(s) 1007
PspGI CCWGG 1 cut(s) 1007
PspN4I GGNNCC 2 cut(s) 373, 1384
PspPI GGNCC 1 cut(s) 1159
PspXI VCTCGAGB 1 cut(s) 1377
PstNI CAGNNNCTG 1 cut(s) 1019
PsuI RGATCY 1 cut(s) 767
RsaI GTAC 6 cut(s) 262, 373, 993, 1134, 1288, 1337
RsaNI GTAC 6 cut(s) 261, 372, 992, 1133, 1287, 1336
RseI CAYNNNNRTG 3 cut(s) 169, 1134, 1263
SaqAI TTAA 4 cut(s) 452, 585, 591, 1304
Sau3AI GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
Sau96I GGNCC 1 cut(s) 1159
SchI GAGTC 2 cut(s) 803, 1464
ScrFI CCNGG 2 cut(s) 1009, 1387
SduI GDGCHC 1 cut(s) 1387
SfaNI GCATC 5 cut(s) 13, 226, 347, 525, 683
SfcI CTRYAG 2 cut(s) 400, 726
Sfr274I CTCGAG 1 cut(s) 1377
SlaI CTCGAG 1 cut(s) 1377
SmiMI CAYNNNNRTG 3 cut(s) 169, 1134, 1263
SmlI CTYRAG 5 cut(s) 92, 249, 818, 1377, 1495
SmoI CTYRAG 5 cut(s) 92, 249, 818, 1377, 1495
SnaBI TACGTA 2 cut(s) 1052, 1286
SphI GCATGC 1 cut(s) 1324
SseBI AGGCCT 1 cut(s) 30
SspI AATATT 2 cut(s) 1070, 1461
SspMI CTAG 6 cut(s) 81, 123, 189, 492, 771, 1224
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 2 cut(s) 1007, 1385
StyI CCWWGG 3 cut(s) 31, 681, 1272
TaaI ACNGT 5 cut(s) 285, 376, 404, 530, 988
TaiI ACGT 4 cut(s) 164, 1054, 1138, 1288
TaqI TCGA 4 cut(s) 1152, 1378, 1424, 1473
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 4 cut(s) 428, 1016, 1238, 1421
Tru1I TTAA 4 cut(s) 452, 585, 591, 1304
Tru9I TTAA 4 cut(s) 452, 585, 591, 1304
TscAI CASTG 5 cut(s) 263, 288, 372, 993, 1210
TseFI GTSAC 3 cut(s) 162, 243, 1003
Tsp45I GTSAC 3 cut(s) 162, 243, 1003
TspDTI ATGAA 7 cut(s) 183, 441, 611, 917, 1097, 1281, 1380
TspRI CASTG 5 cut(s) 263, 288, 372, 993, 1210
XagI CCTNNNNNAGG 1 cut(s) 24
XapI RAATTY 4 cut(s) 150, 554, 688, 1145
XbaI TCTAGA 1 cut(s) 770
XceI RCATGY 1 cut(s) 1324
XhoI CTCGAG 1 cut(s) 1377
XmiI GTMKAC 3 cut(s) 11, 725, 803
XmnI GAANNNNTTC 2 cut(s) 555, 1212
XspI CTAG 6 cut(s) 81, 123, 189, 492, 771, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.