Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002624

Physical Location & Seq

Genomic Coordinates Reverse (-)

27991905 .. 27999040

Gene Structure 7136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG244900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGTTGAATCAAAGGTGATATGTATATGCCTTCTTATTATAGAATTTATGTTCTTTCCTGATGAGTTTCTTGAGGTTTATAACCTATTTAACTGGAAAGTTTCCTTGGATGCAGGCTTTTGTGGATATGATAGGGAAAAGAGCATGGAGAAACTTCTTTTTATGTCAGCATCAACCTTGGAAAATTCTGATGATCTTGTTAGTTTAGAAAGTTCAAAGTCTACAGAGAAGTGTTCAGATCAACATTCTGCTCATAGTAATGGATCTAGAAATGCAAGAAATCCAATAGAAGGTGGGTCTACTGACTCTGCTCTTGAGAAAGATTTATATGAAGCATTGTTTGGTGTTCCTGAAAGATTGGAAGAAGCACCGAAAGTAAATCTCCCATCAAGGGGACTGAAGAGGAATGGATATAGGGGATTTCATGGTAATTTGGTGGTTGAACCTTTTAGAGACACAATTATAGAAAGCAAAATTGCGACAGTGGTACGACGAGAAGTCACCAGGGCAGAATCTGAGGATGTTGAGAATAGCTATGAGGTTCTACGTAATTCTGTGAAGGAATATTGGATTACAAAGAAGGAGTATTACAAAACTGCTTTAGAAGCATTTTCTGAGGGTGATCATGTACGTGCAGATAAATTTTTTGAGAAGGGCCATTTCTTTTGCAGAAAGGCACGGGAAGCAGATGACAAATCCACTGAAAAACTTCTTCAGACTAGAGATGATGATGATTCTGTGTCTCTTGACTTGCATGATCATGAACCCAAGGAAGCTATACGTACTCTAAGGTCTGAATTAACCTATCTCTCCGGCATGCCAGCTTTCAAGTACCTTAGGATCATAGTGGGAAGCAATGATGAAGATACCACTCGAGGAGCGCGGAGAAGACTGATTATAAAGCAACTGGAGAAGGAATCGATCAAATGGACTGAGGAGGAGAATGGGCAGATAATATTGATCCGACTCGATGTGATTGACCCGAAACGCTTGAGCTTCTCAAAAAAATCGAATGAAAGAATCCAGAGCTCACCTTCATTTGGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771

Protein Analysis

349

Amino Acids

40.14

Weight (kDa)

5.44

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1771	PF08590	179 - 241	2.5e-11	Domain of unknown function (DUF1771)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15390 AT3G15390 AT3G15390
fragaria_vesca	FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430 FvH4_3g20430
malus_domestica	MD00G1089400.v1.1
prunus_persica	Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1 Prupe.4G184000_v2.0.a1
pyrus_communis	pycom11g21510
rosa_chinensis	RchiOBHm_Chr5g0034321
rosa_laevigata	RLG00000033540
rosa_multiflora	Rmu_sc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00045920 Rroxscaffold_1G00045950
rosa_rugosa	Rorug05G0145300 Rorug05G0145300
rosa_samantha	Rh5AG236900 Rh5BG237400 Rh5CG267200 Rh5DG244900
rosa_wichuraiana	Rw0G022190 Rw5G021270 Rw5G021660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	81, 899
AccI	GTMKAC	2 cut(s)	221, 299
AccII	CGCG	1 cut(s)	883
AciI	CCGC	1 cut(s)	883
AclWI	GGATC	3 cut(s)	271, 848, 955
AcsI	RAATTY	3 cut(s)	44, 184, 641
AcuI	CTGAAG	2 cut(s)	419, 698
AfaI	GTAC	4 cut(s)	489, 630, 784, 833
AfiI	CCNNNNNNNGG	4 cut(s)	290, 391, 392, 1040
AgsI	TTSAA	4 cut(s)	8, 216, 443, 829
AhdI	GACNNNNNGTC	1 cut(s)	497
AjnI	CCWGG	1 cut(s)	503
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 324, 356
AluBI	AGCT	5 cut(s)	534, 776, 824, 996, 1029
AluI	AGCT	5 cut(s)	534, 776, 824, 996, 1029
Alw21I	GWGCWC	1 cut(s)	1031
Alw26I	GTCTC	2 cut(s)	447, 747
AlwI	GGATC	3 cut(s)	271, 848, 955
AlwNI	CAGNNNCTG	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	873
AoxI	GGCC	1 cut(s)	655
ApoI	RAATTY	3 cut(s)	44, 184, 641
Asp700I	GAANNNNTTC	1 cut(s)	708
AspLEI	GCGC	1 cut(s)	883
AspS9I	GGNCC	1 cut(s)	655
AsuHPI	GGTGA	4 cut(s)	28, 493, 632, 1023
AvaI	CYCGRG	1 cut(s)	873
AxyI	CCTNAGG	1 cut(s)	836
BanII	GRGCYC	1 cut(s)	1031
BarI	GAAGNNNNNNTAC	2 cut(s)	572, 604
BbsI	GAAGAC	1 cut(s)	895
Bbv12I	GWGCWC	1 cut(s)	1031
BccI	CCATC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	505
BclI	TGATCA	2 cut(s)	622, 757
BcoDI	GTCTC	2 cut(s)	447, 747
BfaI	CTAG	2 cut(s)	267, 720
BfmI	CTRYAG	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	505
BmeRI	GACNNNNNGTC	1 cut(s)	497
BmeT110I	CYCGRG	1 cut(s)	873
BmgT120I	GGNCC	1 cut(s)	655
BmrFI	CCNGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	100, 179
BpiI	GAAGAC	1 cut(s)	895
BpmI	CTGGAG	1 cut(s)	929
BpuEI	CTTGAG	3 cut(s)	92, 335, 1012
Bsa29I	ATCGAT	1 cut(s)	920
BsaAI	YACGTR	3 cut(s)	548, 632, 782
BsaJI	CCNNGG	4 cut(s)	105, 177, 504, 768
Bsc4I	CCNNNNNNNGG	4 cut(s)	290, 391, 392, 1040
Bse1I	ACTGG	2 cut(s)	98, 912
Bse21I	CCTNAGG	1 cut(s)	836
Bse3DI	GCAATG	1 cut(s)	862
BseBI	CCWGG	1 cut(s)	505
BseCI	ATCGAT	1 cut(s)	920
BseDI	CCNNGG	4 cut(s)	105, 177, 504, 768
BseGI	GGATG	2 cut(s)	115, 526
BseLI	CCNNNNNNNGG	4 cut(s)	290, 391, 392, 1040
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	3 cut(s)	507, 606, 924
BseNI	ACTGG	2 cut(s)	98, 912
BseRI	GAGGAG	3 cut(s)	891, 950, 953
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	1 cut(s)	883
BshFI	GGCC	1 cut(s)	657
BshVI	ATCGAT	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	1031
BsiHKCI	CYCGRG	1 cut(s)	873
BsiSI	CCGG	1 cut(s)	813
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	4 cut(s)	290, 391, 392, 1040
BsmAI	GTCTC	2 cut(s)	447, 747
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	657
BsoBI	CYCGRG	1 cut(s)	873
Bsp1286I	GDGCHC	1 cut(s)	1031
Bsp143I	GATC	8 cut(s)	193, 238, 263, 622, 757, 840, 921, 960
BspACI	CCGC	1 cut(s)	883
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	3 cut(s)	508, 607, 925
BspDI	ATCGAT	1 cut(s)	920
BspFNI	CGCG	1 cut(s)	883
BspHI	TCATGA	1 cut(s)	760
BspPI	GGATC	3 cut(s)	271, 848, 955
BsrDI	GCAATG	1 cut(s)	862
BsrI	ACTGG	2 cut(s)	98, 912
BssECI	CCNNGG	4 cut(s)	105, 177, 504, 768
BssMI	GATC	8 cut(s)	193, 238, 263, 622, 757, 840, 921, 960
BssT1I	CCWWGG	3 cut(s)	105, 177, 768
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	395
BstBAI	YACGTR	3 cut(s)	548, 632, 782
BstC8I	GCNNGC	3 cut(s)	115, 818, 822
BstDEI	CTNAG	5 cut(s)	516, 615, 788, 836, 933
BstF5I	GGATG	2 cut(s)	115, 526
BstFNI	CGCG	1 cut(s)	883
BstHHI	GCGC	1 cut(s)	883
BstKTI	GATC	8 cut(s)	196, 241, 266, 625, 760, 843, 924, 963
BstMAI	GTCTC	2 cut(s)	447, 747
BstMBI	GATC	8 cut(s)	193, 238, 263, 622, 757, 840, 921, 960
BstMWI	GCNNNNNNNGC	2 cut(s)	605, 683
BstNI	CCWGG	1 cut(s)	505
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	1 cut(s)	503
BstSFI	CTRYAG	1 cut(s)	222
BstSNI	TACGTA	2 cut(s)	548, 782
BstUI	CGCG	1 cut(s)	883
BstV2I	GAAGAC	1 cut(s)	895
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	920
Bsu36I	CCTNAGG	1 cut(s)	836
BsuRI	GGCC	1 cut(s)	657
BsuTUI	ATCGAT	1 cut(s)	920
BtsCI	GGATG	2 cut(s)	115, 526
BtsIMutI	CAGTG	2 cut(s)	489, 699
Cac8I	GCNNGC	3 cut(s)	115, 818, 822
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	1 cut(s)	883
Cfr13I	GGNCC	1 cut(s)	655
ClaI	ATCGAT	1 cut(s)	920
Csp6I	GTAC	4 cut(s)	488, 629, 783, 832
CviAII	CATG	6 cut(s)	145, 425, 626, 755, 761, 817
CviJI	RGCY	8 cut(s)	117, 534, 657, 776, 824, 996, 1029, 1045
CviKI_1	RGCY	8 cut(s)	117, 534, 657, 776, 824, 996, 1029, 1045
CviQI	GTAC	4 cut(s)	488, 629, 783, 832
DdeI	CTNAG	5 cut(s)	516, 615, 788, 836, 933
DpnI	GATC	8 cut(s)	195, 240, 265, 624, 759, 842, 923, 962
DpnII	GATC	8 cut(s)	193, 238, 263, 622, 757, 840, 921, 960
DriI	GACNNNNNGTC	1 cut(s)	497
Eam1104I	CTCTTC	1 cut(s)	395
Eam1105I	GACNNNNNGTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	1029
Eco105I	TACGTA	2 cut(s)	548, 782
Eco130I	CCWWGG	3 cut(s)	105, 177, 768
Eco24I	GRGCYC	1 cut(s)	1031
Eco53kI	GAGCTC	1 cut(s)	1029
Eco57I	CTGAAG	2 cut(s)	419, 698
Eco81I	CCTNAGG	1 cut(s)	836
Eco88I	CYCGRG	1 cut(s)	873
EcoICRI	GAGCTC	1 cut(s)	1029
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	3 cut(s)	105, 177, 768
EcoT38I	GRGCYC	1 cut(s)	1031
ErhI	CCWWGG	3 cut(s)	105, 177, 768
FaeI	CATG	6 cut(s)	148, 428, 629, 758, 764, 820
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	6 cut(s)	144, 424, 625, 754, 760, 816
FbaI	TGATCA	2 cut(s)	622, 757
FblI	GTMKAC	2 cut(s)	221, 299
FokI	GGATG	2 cut(s)	122, 533
FriOI	GRGCYC	1 cut(s)	1031
FspBI	CTAG	2 cut(s)	267, 720
GlaI	GCGC	1 cut(s)	882
GsuI	CTGGAG	1 cut(s)	929
HaeIII	GGCC	1 cut(s)	657
HapII	CCGG	1 cut(s)	813
HhaI	GCGC	1 cut(s)	883
Hin1II	CATG	6 cut(s)	148, 428, 629, 758, 764, 820
Hin6I	GCGC	1 cut(s)	881
HinP1I	GCGC	1 cut(s)	881
HinfI	GANTC	7 cut(s)	8, 305, 512, 734, 917, 966, 1020
HpaII	CCGG	1 cut(s)	813
HphI	GGTGA	4 cut(s)	28, 493, 632, 1023
Hpy166II	GTNNAC	2 cut(s)	222, 300
Hpy188I	TCNGA	7 cut(s)	190, 238, 517, 616, 717, 796, 965
Hpy188III	TCNNGA	8 cut(s)	59, 71, 267, 314, 350, 746, 761, 1024
Hpy8I	GTNNAC	2 cut(s)	222, 300
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	7 cut(s)	41, 284, 553, 574, 646, 907, 1044
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	3 cut(s)	547, 631, 781
HpyCH4V	TGCA	5 cut(s)	113, 275, 635, 669, 754
HpyF10VI	GCNNNNNNNGC	2 cut(s)	605, 683
HpyF3I	CTNAG	5 cut(s)	516, 615, 788, 836, 933
HpySE526I	ACGT	3 cut(s)	547, 631, 781
Hsp92II	CATG	6 cut(s)	148, 428, 629, 758, 764, 820
HspAI	GCGC	1 cut(s)	881
Ksp22I	TGATCA	2 cut(s)	622, 757
Kzo9I	GATC	8 cut(s)	193, 238, 263, 622, 757, 840, 921, 960
LmnI	GCTCC	1 cut(s)	878
LweI	GCATC	2 cut(s)	100, 179
MaeI	CTAG	2 cut(s)	267, 720
MaeII	ACGT	3 cut(s)	547, 631, 781
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	8 cut(s)	195, 240, 265, 624, 759, 842, 923, 962
MboI	GATC	8 cut(s)	193, 238, 263, 622, 757, 840, 921, 960
MboII	GAAGA	5 cut(s)	374, 412, 704, 875, 900
MflI	RGATCY	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	1031
MluCI	AATT	8 cut(s)	44, 184, 430, 459, 474, 550, 641, 797
MlyI	GAGTC	2 cut(s)	299, 960
MmeI	TCCRAC	1 cut(s)	988
MnlI	CCTC	8 cut(s)	67, 396, 511, 532, 610, 869, 928, 931
MroXI	GAANNNNTTC	1 cut(s)	708
MseI	TTAA	2 cut(s)	90, 800
MslI	CAYNNNNRTG	3 cut(s)	258, 630, 759
MspI	CCGG	1 cut(s)	813
MspR9I	CCNGG	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	1 cut(s)	883
MwoI	GCNNNNNNNGC	2 cut(s)	605, 683
NdeII	GATC	8 cut(s)	193, 238, 263, 622, 757, 840, 921, 960
NlaIII	CATG	6 cut(s)	148, 428, 629, 758, 764, 820
NmuCI	GTSAC	1 cut(s)	499
NspI	RCATGY	1 cut(s)	820
PaeI	GCATGC	1 cut(s)	820
PaeR7I	CTCGAG	1 cut(s)	873
PagI	TCATGA	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	5 cut(s)	8, 512, 734, 917, 1020
PleI	GAGTC	2 cut(s)	299, 960
PpsI	GAGTC	2 cut(s)	299, 960
Ppu21I	YACGTR	3 cut(s)	548, 632, 782
PsiI	TTATAA	2 cut(s)	81, 899
Psp124BI	GAGCTC	1 cut(s)	1031
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	655
PspXI	VCTCGAGB	1 cut(s)	873
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	4 cut(s)	489, 630, 784, 833
RsaNI	GTAC	4 cut(s)	488, 629, 783, 832
RseI	CAYNNNNRTG	3 cut(s)	258, 630, 759
SacI	GAGCTC	1 cut(s)	1031
SaqAI	TTAA	2 cut(s)	90, 800
Sau3AI	GATC	8 cut(s)	193, 238, 263, 622, 757, 840, 921, 960
Sau96I	GGNCC	1 cut(s)	655
SchI	GAGTC	2 cut(s)	299, 960
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	1031
SfaNI	GCATC	2 cut(s)	100, 179
SfcI	CTRYAG	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	873
SlaI	CTCGAG	1 cut(s)	873
SmiMI	CAYNNNNRTG	3 cut(s)	258, 630, 759
SmlI	CTYRAG	4 cut(s)	71, 314, 873, 991
SmoI	CTYRAG	4 cut(s)	71, 314, 873, 991
SnaBI	TACGTA	2 cut(s)	548, 782
SphI	GCATGC	1 cut(s)	820
Sse9I	AATT	8 cut(s)	44, 184, 430, 459, 474, 550, 641, 797
SsiI	CCGC	1 cut(s)	883
SspI	AATATT	2 cut(s)	566, 957
SspMI	CTAG	2 cut(s)	267, 720
SstI	GAGCTC	1 cut(s)	1031
StyD4I	CCNGG	1 cut(s)	503
StyI	CCWWGG	3 cut(s)	105, 177, 768
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	3 cut(s)	550, 634, 784
TaqI	TCGA	4 cut(s)	874, 920, 969, 1010
TasI	AATT	8 cut(s)	44, 184, 430, 459, 474, 550, 641, 797
TfiI	GAWTC	5 cut(s)	8, 512, 734, 917, 1020
Tru1I	TTAA	2 cut(s)	90, 800
Tru9I	TTAA	2 cut(s)	90, 800
TscAI	CASTG	2 cut(s)	489, 706
TseFI	GTSAC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	6 cut(s)	345, 413, 777, 876, 1026, 1029
TspRI	CASTG	2 cut(s)	489, 706
XapI	RAATTY	3 cut(s)	44, 184, 641
XbaI	TCTAGA	1 cut(s)	266
XceI	RCATGY	1 cut(s)	820
XhoI	CTCGAG	1 cut(s)	873
XmiI	GTMKAC	2 cut(s)	221, 299
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	2 cut(s)	267, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.