Rw5G021660

DUF1771

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
29407798 .. 29415033
7236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021660.1

Sequence Viewer

Length: 1515 bp
ATGCAAGCATCTACCTTACCTGATGCAGGCCTTGATAAAGAGAAAAAGGACTTGACATATTTGCTTGATGTGTTTAGCTCTAGTTGTTCTCTTGAGGACATTGCCTCTGCTTATGTCAAGGCTAGGCACAATGTAAAAATGGCTGGTGAAATTCTTTGCACGTCACATTTATGTTCCTCAGATGGTGCTAGTTCATCAAAGGCTATATTTGAGGGTGCAAGTGATACATTTTCAGATGGCCTGTCACCTCAAGTGCAGTGTACAAGTGTAGTTCCTGCAGCACTGTCATCTGTCAGCATTCTTCAAAAGACCTCTAATGGAGTTGGCAATACCAGAGCATCAAAGTCAAAAAGACCTCCTCTATCAGTGGGTACCGTTTCTGGTGTGATAGGAAAAGACTACAGTAGGCAAAAGACATCAAAAAATGAATCTGCTGAAATGCAGAAACCATTAAAATTAGAATTGAAAGAAATGCCTTTCTCTGATTTATCTAGTGAAGAAGTCCAATCAAGCATGACAGCTAACAACAGTAAGATGCACACCGATATTGAAGAATTTCTGTTTGAAATGCTTGGAGATGGCTTTAAACTTAATATGAATGTGATCAAAGAAGTTCTCAGCTTTTGTGGATATGATAGGGAAAAGAGCATGGAGAAACTTCTTTTTATGTCAGCATCAACCTTGGAAAATTCTGATGATCTTGTTAGTTTAGAAAGTTCAAAGTCTACAGAGAAGTGTTCAGATCAACATTCTGCTCATAGTAATGGATCTAGAAATGCAAGAAATCCAATAGAAGGTGGGTCTACTGACTCTGCTCTTGAGAAAGAGTTATTTGAAGTGTTGTTTGGTGTTCCTGAAAGATTGGAAGAAGCACCTAAAGTAAATCTCCCATCAAGGGGACTGAAGAGAAATGGATATAGGGGATTTCATGGTAATTTGGTGGTTGAACCTTTTAGAGACACAATTATAGAAAACAAAATTGCGACAGTGGTACGACGAGAAGTCACCAGGGCAGAATCTGAGGATGTTGAGAATAGCTATGAGGTTCTACGTAATTCTGTGAAGGAATATTGGATTACAATGAAGGAGTATTACAAAACTGCTTTAGAAGCATTTTCTGAGGGTGATCATGTACGTGCAGATAAATTTTTCGAGAAGGGCCATTTCTTTTGCAGAAAGGCACGGGAAGCAGATGACAAATCCACTGAAAAACTTCTTCAGACTAGAGATGATGATGATTCTGTGTCTCTTGACTTGCATGATCATGAACCCAAGGAAGCTATACGTACTCTAAGGTTTGAATTAACCTATCTCTCCGGCATGCCAGCTTTCAAGTACCTTAGGATCATAGTGGGAAGCAATGATGAAGATACCACTCGAGGAGCGCGGAGAAGACTGATTATAAAGCAACTGGAGAAGGAATCGATCAAATGGACTGAGGAGGAGAATGGGCAGATAATATTGATCCGACTCGATGTGATTGACCCGAAACGCTTGAGCTTCTCAAAAAAATAG

Protein Analysis

504

Amino Acids

56.45

Weight (kDa)

5.61

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_At5g58720 PF24767 12 - 54 3.6e-07 At5g58720 UBA-like domain
DUF1771 PF08590 347 - 409 8.5e-12 Domain of unknown function (DUF1771)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1403
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 371
AccI GTMKAC 2 cut(s) 725, 803
AccII CGCG 1 cut(s) 1387
AciI CCGC 1 cut(s) 1387
AclWI GGATC 3 cut(s) 775, 1352, 1459
AcsI RAATTY 4 cut(s) 150, 554, 688, 1145
AcuI CTGAAG 2 cut(s) 923, 1202
AfaI GTAC 6 cut(s) 262, 373, 993, 1134, 1288, 1337
AfiI CCNNNNNNNGG 4 cut(s) 26, 794, 895, 896
AgsI TTSAA 9 cut(s) 305, 466, 551, 566, 720, 836, 947, 1301, 1333
AhdI GACNNNNNGTC 1 cut(s) 1001
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 1 cut(s) 1007
AjuI GAANNNNNNNTTGG 2 cut(s) 828, 860
AluBI AGCT 7 cut(s) 78, 521, 621, 1038, 1280, 1328, 1500
AluI AGCT 7 cut(s) 78, 521, 621, 1038, 1280, 1328, 1500
Alw26I GTCTC 2 cut(s) 951, 1251
AlwI GGATC 3 cut(s) 775, 1352, 1459
AlwNI CAGNNNCTG 1 cut(s) 1019
Ama87I CYCGRG 1 cut(s) 1377
AoxI GGCC 3 cut(s) 28, 238, 1159
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 4 cut(s) 150, 554, 688, 1145
Asp700I GAANNNNTTC 2 cut(s) 555, 1212
Asp718I GGTACC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 1387
AspS9I GGNCC 1 cut(s) 1159
AsuHPI GGTGA 4 cut(s) 158, 237, 997, 1136
AvaI CYCGRG 1 cut(s) 1377
AxyI CCTNAGG 1 cut(s) 1340
BanI GGYRCC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 1076, 1108
BbsI GAAGAC 1 cut(s) 1399
BbvI GCAGC 1 cut(s) 290
BccI CCATC 4 cut(s) 176, 230, 572, 898
BciT130I CCWGG 1 cut(s) 1009
BclI TGATCA 3 cut(s) 603, 1126, 1261
BcoDI GTCTC 2 cut(s) 951, 1251
BfaI CTAG 6 cut(s) 81, 123, 189, 492, 771, 1224
BfmI CTRYAG 3 cut(s) 276, 400, 726
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 1009
BmeRI GACNNNNNGTC 1 cut(s) 1001
BmeT110I CYCGRG 1 cut(s) 1377
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 1159
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 1009
BmsI GCATC 5 cut(s) 13, 17, 347, 525, 683
BpiI GAAGAC 1 cut(s) 1399
BpmI CTGGAG 1 cut(s) 1433
BpuEI CTTGAG 3 cut(s) 113, 234, 839
Bsa29I ATCGAT 1 cut(s) 1424
BsaAI YACGTR 3 cut(s) 1052, 1136, 1286
BsaJI CCNNGG 3 cut(s) 681, 1008, 1272
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 794, 895, 896
Bse1I ACTGG 1 cut(s) 1416
Bse21I CCTNAGG 1 cut(s) 1340
Bse3DI GCAATG 2 cut(s) 99, 1366
BseBI CCWGG 1 cut(s) 1009
BseCI ATCGAT 1 cut(s) 1424
BseDI CCNNGG 3 cut(s) 681, 1008, 1272
BseGI GGATG 1 cut(s) 1030
BseLI CCNNNNNNNGG 4 cut(s) 26, 794, 895, 896
BseMI GCAATG 2 cut(s) 99, 1366
BseMII CTCAG 5 cut(s) 192, 631, 1011, 1110, 1428
BseNI ACTGG 1 cut(s) 1416
BseRI GAGGAG 4 cut(s) 348, 1395, 1454, 1457
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 2 cut(s) 275, 1158
Bsh1236I CGCG 1 cut(s) 1387
BshFI GGCC 3 cut(s) 30, 240, 1161
BshNI GGYRCC 1 cut(s) 371
BshVI ATCGAT 1 cut(s) 1424
BsiHKCI CYCGRG 1 cut(s) 1377
BsiSI CCGG 1 cut(s) 1317
BslFI GGGAC 1 cut(s) 912
BslI CCNNNNNNNGG 4 cut(s) 26, 794, 895, 896
BsmAI GTCTC 2 cut(s) 951, 1251
BsmFI GGGAC 1 cut(s) 912
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 3 cut(s) 30, 240, 1161
BsoBI CYCGRG 1 cut(s) 1377
Bsp1407I TGTACA 1 cut(s) 260
Bsp143I GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
BspACI CCGC 1 cut(s) 1387
BspANI GGCC 3 cut(s) 30, 240, 1161
BspCNI CTCAG 5 cut(s) 191, 630, 1012, 1111, 1429
BspDI ATCGAT 1 cut(s) 1424
BspFNI CGCG 1 cut(s) 1387
BspHI TCATGA 1 cut(s) 1264
BspLI GGNNCC 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 3 cut(s) 775, 1352, 1459
BspT107I GGYRCC 1 cut(s) 371
BsrDI GCAATG 2 cut(s) 99, 1366
BsrGI TGTACA 1 cut(s) 260
BsrI ACTGG 1 cut(s) 1416
BssECI CCNNGG 3 cut(s) 681, 1008, 1272
BssMI GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
BssT1I CCWWGG 2 cut(s) 681, 1272
Bst2UI CCWGG 1 cut(s) 1009
Bst4CI ACNGT 5 cut(s) 285, 376, 404, 530, 988
Bst6I CTCTTC 1 cut(s) 899
BstAUI TGTACA 1 cut(s) 260
BstBAI YACGTR 3 cut(s) 1052, 1136, 1286
BstC8I GCNNGC 4 cut(s) 6, 28, 1322, 1326
BstDEI CTNAG 7 cut(s) 178, 617, 1020, 1119, 1292, 1340, 1437
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 1030
BstFNI CGCG 1 cut(s) 1387
BstHHI GCGC 1 cut(s) 1387
BstKTI GATC 9 cut(s) 606, 700, 745, 770, 1129, 1264, 1347, 1428, 1467
BstMAI GTCTC 2 cut(s) 951, 1251
BstMBI GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
BstMWI GCNNNNNNNGC 2 cut(s) 1109, 1187
BstNI CCWGG 1 cut(s) 1009
BstNSI RCATGY 1 cut(s) 1324
BstSCI CCNGG 1 cut(s) 1007
BstSFI CTRYAG 3 cut(s) 276, 400, 726
BstSNI TACGTA 2 cut(s) 1052, 1286
BstUI CGCG 1 cut(s) 1387
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 1399
BstX2I RGATCY 1 cut(s) 767
BstYI RGATCY 1 cut(s) 767
Bsu15I ATCGAT 1 cut(s) 1424
Bsu36I CCTNAGG 1 cut(s) 1340
BsuRI GGCC 3 cut(s) 30, 240, 1161
BsuTUI ATCGAT 1 cut(s) 1424
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 1030
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 5 cut(s) 263, 281, 372, 993, 1203
Cac8I GCNNGC 4 cut(s) 6, 28, 1322, 1326
CaiI CAGNNNCTG 1 cut(s) 1019
CciI TCATGA 1 cut(s) 1264
CfoI GCGC 1 cut(s) 1387
Cfr13I GGNCC 1 cut(s) 1159
ClaI ATCGAT 1 cut(s) 1424
Csp6I GTAC 6 cut(s) 261, 372, 992, 1133, 1287, 1336
CviAII CATG 7 cut(s) 514, 649, 929, 1130, 1259, 1265, 1321
CviQI GTAC 6 cut(s) 261, 372, 992, 1133, 1287, 1336
DdeI CTNAG 7 cut(s) 178, 617, 1020, 1119, 1292, 1340, 1437
DpnI GATC 9 cut(s) 605, 699, 744, 769, 1128, 1263, 1346, 1427, 1466
DpnII GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
DraI TTTAAA 1 cut(s) 586
DriI GACNNNNNGTC 1 cut(s) 1001
Eam1104I CTCTTC 1 cut(s) 899
Eam1105I GACNNNNNGTC 1 cut(s) 1001
EarI CTCTTC 1 cut(s) 899
Eco105I TACGTA 2 cut(s) 1052, 1286
Eco130I CCWWGG 2 cut(s) 681, 1272
Eco147I AGGCCT 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 923, 1202
Eco81I CCTNAGG 1 cut(s) 1340
Eco88I CYCGRG 1 cut(s) 1377
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 1007
EcoT14I CCWWGG 2 cut(s) 681, 1272
ErhI CCWWGG 2 cut(s) 681, 1272
FaeI CATG 7 cut(s) 517, 652, 932, 1133, 1262, 1268, 1324
FaqI GGGAC 1 cut(s) 912
FatI CATG 7 cut(s) 513, 648, 928, 1129, 1258, 1264, 1320
FbaI TGATCA 3 cut(s) 603, 1126, 1261
FblI GTMKAC 2 cut(s) 725, 803
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 1037
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 6 cut(s) 81, 123, 189, 492, 771, 1224
GlaI GCGC 1 cut(s) 1386
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 1433
HaeIII GGCC 3 cut(s) 30, 240, 1161
HapII CCGG 1 cut(s) 1317
HhaI GCGC 1 cut(s) 1387
Hin1II CATG 7 cut(s) 517, 652, 932, 1133, 1262, 1268, 1324
Hin6I GCGC 1 cut(s) 1385
HinP1I GCGC 1 cut(s) 1385
HinfI GANTC 6 cut(s) 428, 809, 1016, 1238, 1421, 1470
HpaII CCGG 1 cut(s) 1317
HphI GGTGA 4 cut(s) 158, 237, 997, 1136
Hpy166II GTNNAC 3 cut(s) 261, 726, 804
Hpy188I TCNGA 9 cut(s) 181, 235, 484, 694, 742, 1021, 1120, 1221, 1469
Hpy188III TCNNGA 7 cut(s) 92, 771, 818, 854, 1153, 1250, 1265
Hpy8I GTNNAC 3 cut(s) 261, 726, 804
Hpy99I CGWCG 1 cut(s) 999
HpyAV CCTTC 5 cut(s) 788, 1057, 1078, 1150, 1411
HpyCH4III ACNGT 5 cut(s) 285, 376, 404, 530, 988
HpyCH4IV ACGT 4 cut(s) 161, 1051, 1135, 1285
HpyF10VI GCNNNNNNNGC 2 cut(s) 1109, 1187
HpyF3I CTNAG 7 cut(s) 178, 617, 1020, 1119, 1292, 1340, 1437
HpySE526I ACGT 4 cut(s) 161, 1051, 1135, 1285
Hsp92II CATG 7 cut(s) 517, 652, 932, 1133, 1262, 1268, 1324
HspAI GCGC 1 cut(s) 1385
KpnI GGTACC 1 cut(s) 375
Ksp22I TGATCA 3 cut(s) 603, 1126, 1261
Kzo9I GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
LmnI GCTCC 1 cut(s) 1382
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 5 cut(s) 13, 17, 347, 525, 683
MaeI CTAG 6 cut(s) 81, 123, 189, 492, 771, 1224
MaeII ACGT 4 cut(s) 161, 1051, 1135, 1285
MaeIII GTNAC 3 cut(s) 162, 243, 1003
MalI GATC 9 cut(s) 605, 699, 744, 769, 1128, 1263, 1346, 1427, 1466
MboI GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
MboII GAAGA 8 cut(s) 293, 509, 563, 878, 916, 1208, 1379, 1404
MflI RGATCY 1 cut(s) 767
MlyI GAGTC 2 cut(s) 803, 1464
MmeI TCCRAC 1 cut(s) 1492
MroXI GAANNNNTTC 2 cut(s) 555, 1212
MseI TTAA 4 cut(s) 452, 585, 591, 1304
MslI CAYNNNNRTG 4 cut(s) 169, 762, 1134, 1263
MspI CCGG 1 cut(s) 1317
MspR9I CCNGG 1 cut(s) 1009
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 1 cut(s) 1009
MvnI CGCG 1 cut(s) 1387
MwoI GCNNNNNNNGC 2 cut(s) 1109, 1187
NdeII GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
NlaIII CATG 7 cut(s) 517, 652, 932, 1133, 1262, 1268, 1324
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 3 cut(s) 162, 243, 1003
NspI RCATGY 1 cut(s) 1324
PaeI GCATGC 1 cut(s) 1324
PaeR7I CTCGAG 1 cut(s) 1377
PagI TCATGA 1 cut(s) 1264
PceI AGGCCT 1 cut(s) 30
PctI GAATGC 1 cut(s) 297
PdmI GAANNNNTTC 2 cut(s) 555, 1212
PfeI GAWTC 4 cut(s) 428, 1016, 1238, 1421
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 2 cut(s) 803, 1464
PpsI GAGTC 2 cut(s) 803, 1464
Ppu21I YACGTR 3 cut(s) 1052, 1136, 1286
PsiI TTATAA 1 cut(s) 1403
Psp6I CCWGG 1 cut(s) 1007
PspGI CCWGG 1 cut(s) 1007
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 1159
PspXI VCTCGAGB 1 cut(s) 1377
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 1019
PsuI RGATCY 1 cut(s) 767
RsaI GTAC 6 cut(s) 262, 373, 993, 1134, 1288, 1337
RsaNI GTAC 6 cut(s) 261, 372, 992, 1133, 1287, 1336
RseI CAYNNNNRTG 4 cut(s) 169, 762, 1134, 1263
SaqAI TTAA 4 cut(s) 452, 585, 591, 1304
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 9 cut(s) 603, 697, 742, 767, 1126, 1261, 1344, 1425, 1464
Sau96I GGNCC 1 cut(s) 1159
SchI GAGTC 2 cut(s) 803, 1464
ScrFI CCNGG 1 cut(s) 1009
SfaNI GCATC 5 cut(s) 13, 17, 347, 525, 683
SfcI CTRYAG 3 cut(s) 276, 400, 726
Sfr274I CTCGAG 1 cut(s) 1377
SlaI CTCGAG 1 cut(s) 1377
SmiMI CAYNNNNRTG 4 cut(s) 169, 762, 1134, 1263
SmlI CTYRAG 5 cut(s) 92, 249, 818, 1377, 1495
SmoI CTYRAG 5 cut(s) 92, 249, 818, 1377, 1495
SnaBI TACGTA 2 cut(s) 1052, 1286
SphI GCATGC 1 cut(s) 1324
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 1 cut(s) 1387
SspI AATATT 2 cut(s) 1070, 1461
SspMI CTAG 6 cut(s) 81, 123, 189, 492, 771, 1224
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 1007
StyI CCWWGG 2 cut(s) 681, 1272
TaaI ACNGT 5 cut(s) 285, 376, 404, 530, 988
TaiI ACGT 4 cut(s) 164, 1054, 1138, 1288
TaqI TCGA 4 cut(s) 1152, 1378, 1424, 1473
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 4 cut(s) 428, 1016, 1238, 1421
Tru1I TTAA 4 cut(s) 452, 585, 591, 1304
Tru9I TTAA 4 cut(s) 452, 585, 591, 1304
TscAI CASTG 5 cut(s) 263, 288, 372, 993, 1210
TseFI GTSAC 3 cut(s) 162, 243, 1003
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 3 cut(s) 162, 243, 1003
TspDTI ATGAA 7 cut(s) 183, 441, 611, 917, 1097, 1281, 1380
TspRI CASTG 5 cut(s) 263, 288, 372, 993, 1210
XagI CCTNNNNNAGG 1 cut(s) 24
XapI RAATTY 4 cut(s) 150, 554, 688, 1145
XbaI TCTAGA 1 cut(s) 770
XceI RCATGY 1 cut(s) 1324
XhoI CTCGAG 1 cut(s) 1377
XmiI GTMKAC 2 cut(s) 725, 803
XmnI GAANNNNTTC 2 cut(s) 555, 1212
XspI CTAG 6 cut(s) 81, 123, 189, 492, 771, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.