Rmu_sc0000062.1_g000019

DUF1771

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000062.1
Physical Location & Seq
Forward (+)
105009 .. 112048
7040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000062.1_g000019.1.cds

Sequence Viewer

Length: 1680 bp
atggaagcgtctaccttacctgatgcaggccttggtaaagagaaaaaggacttgacatatttgcttgatgtgtttagctctagttgttctcgtgaggacattgcctctgcttatgtcaaggctaggcacaatgtaaaaatggctggtgaaattctttgcacgtcacatttatgttcctcagatggtgctagttcatcaaaggctatatttgagggtgcaagtgatacattttcagatgccctgtcaccacaagtgcagtgtacaagcgtagttcctgcagcactgtcatctgtcagcattcttcagaagacctctaatggagttggcaataccagagcatcaaagtcaaaaagacctcctctatcagtgggtaccgtttctggtgtgataggaaaagactacagtaggcagaagacatcaacaaatgaatctgctgaaatgccaaaaccattaaaattagaattgaaagaaatgcctttctctgatttatctagtgaagaagtccaatcaagcatgacagctaacaacagtaagatgcacgccgatattgaagaatttctgtttgaaatgcttggagatggctttaaacttaatatgaatgtgatcaaagaagttctcaaatttatgttctttcctgatgagtttcttgaggtttataacctatttaactggaaagtttccttggatgcaggcttttgtggatatgatagggaaaagagcatggagaaacttctttttatgtcagcatcaaccttggaaaattctgatgatcttgttagtttagaaagttcaaagtctacagagaagtgttcagatcaacattctgctcatagtaatggatctagaaatgcaagaaatccaatagaaggtgggtctactgactctgctcttgagaaagagttatttgaagcattgtttggtgttcctgaaagattggaagaagcaccgaaagtaaatctcccatcaaggggactgaagaggaatggatataggggatttcatggtaatttggtggttgaaccttttagagacacaattatagaaaacaaaattgcgacagtgatacgacgagaagtcaccagggcagaaggtgggtctactgactctgctcttgagaaagagttatttgaagcattgtttggtgttcctgaaagattggaagaagcaccgaaagtaaatctcccatcaaggggactgaagaggaatggatataggggatttcatggtaatttggtggttgaaccttttagagacacaattatagaaagcaaaattgcgacagtgggccatttcttttgcagaaaggcacgggaagcagatgacaaatccactgaaaaacttcttcagactagagatgatgatgattctgtgtctcttgacttgcatgatcatgaacccaaggaagctatacgtactctaaggtctgaattaacctatctctccggcatgccagctttcaagtaccttaggatcatagtgggaagcaatgatgaagataccactcgaggagcgcggagaagactgattataaagcaactggagaaggaatcgatcaaatggactgaggaggagaatgggcagataatattgatccgactcgatgtgattgacccgaaacgcttgagcttctcaaaaaaatcgaatgaaagaatccagagctcaccttcatttgggctgtga

Protein Analysis

559

Amino Acids

62.12

Weight (kDa)

5.7

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 657, 1529
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 371
AccI GTMKAC 4 cut(s) 11, 797, 875, 1097
AccII CGCG 1 cut(s) 1513
AciI CCGC 1 cut(s) 1513
AclWI GGATC 3 cut(s) 847, 1478, 1585
AcsI RAATTY 4 cut(s) 150, 554, 620, 760
AcuI CTGAAG 4 cut(s) 287, 995, 1217, 1328
AfaI GTAC 4 cut(s) 262, 373, 1414, 1463
AfiI CCNNNNNNNGG 7 cut(s) 26, 866, 967, 968, 1189, 1190, 1670
AgsI TTSAA 9 cut(s) 466, 551, 566, 792, 908, 1019, 1130, 1241, 1459
AhdI GACNNNNNGTC 1 cut(s) 1073
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 1 cut(s) 1079
AjuI GAANNNNNNNTTGG 6 cut(s) 665, 697, 900, 932, 1122, 1154
AluBI AGCT 6 cut(s) 78, 521, 1406, 1454, 1626, 1659
AluI AGCT 6 cut(s) 78, 521, 1406, 1454, 1626, 1659
Alw21I GWGCWC 1 cut(s) 1661
Alw26I GTCTC 3 cut(s) 1023, 1245, 1377
AlwI GGATC 3 cut(s) 847, 1478, 1585
Ama87I CYCGRG 1 cut(s) 1503
AoxI GGCC 2 cut(s) 28, 1285
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 4 cut(s) 150, 554, 620, 760
Asp700I GAANNNNTTC 2 cut(s) 555, 1338
Asp718I GGTACC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 1513
AspS9I GGNCC 1 cut(s) 1285
AsuHPI GGTGA 4 cut(s) 158, 237, 1069, 1653
AvaI CYCGRG 1 cut(s) 1503
AxyI CCTNAGG 1 cut(s) 1466
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 1661
BauI CACGAG 1 cut(s) 90
BbsI GAAGAC 3 cut(s) 314, 419, 1525
Bbv12I GWGCWC 1 cut(s) 1661
BbvI GCAGC 1 cut(s) 290
BccI CCATC 4 cut(s) 176, 572, 970, 1192
BciT130I CCWGG 1 cut(s) 1081
BclI TGATCA 2 cut(s) 603, 1387
BcoDI GTCTC 3 cut(s) 1023, 1245, 1377
BfaI CTAG 6 cut(s) 81, 123, 189, 492, 843, 1350
BfmI CTRYAG 3 cut(s) 276, 400, 798
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 1081
BmeRI GACNNNNNGTC 1 cut(s) 1073
BmeT110I CYCGRG 1 cut(s) 1503
BmgBI CACGTC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 1285
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 1081
BmsI GCATC 6 cut(s) 13, 226, 347, 525, 676, 755
BpiI GAAGAC 3 cut(s) 314, 419, 1525
BpmI CTGGAG 1 cut(s) 1559
BpuEI CTTGAG 4 cut(s) 668, 911, 1133, 1642
Bsa29I ATCGAT 1 cut(s) 1550
BsaAI YACGTR 1 cut(s) 1412
BsaJI CCNNGG 5 cut(s) 31, 681, 753, 1080, 1398
Bsc4I CCNNNNNNNGG 7 cut(s) 26, 866, 967, 968, 1189, 1190, 1670
Bse1I ACTGG 2 cut(s) 674, 1542
Bse21I CCTNAGG 1 cut(s) 1466
Bse3DI GCAATG 2 cut(s) 99, 1492
BseBI CCWGG 1 cut(s) 1081
BseCI ATCGAT 1 cut(s) 1550
BseDI CCNNGG 5 cut(s) 31, 681, 753, 1080, 1398
BseGI GGATG 1 cut(s) 691
BseLI CCNNNNNNNGG 7 cut(s) 26, 866, 967, 968, 1189, 1190, 1670
BseMI GCAATG 2 cut(s) 99, 1492
BseMII CTCAG 2 cut(s) 192, 1554
BseNI ACTGG 2 cut(s) 674, 1542
BseRI GAGGAG 4 cut(s) 348, 1521, 1580, 1583
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 1513
BshFI GGCC 2 cut(s) 30, 1287
BshNI GGYRCC 1 cut(s) 371
BshVI ATCGAT 1 cut(s) 1550
BsiHKAI GWGCWC 1 cut(s) 1661
BsiHKCI CYCGRG 1 cut(s) 1503
BsiSI CCGG 1 cut(s) 1443
BslFI GGGAC 2 cut(s) 984, 1206
BslI CCNNNNNNNGG 7 cut(s) 26, 866, 967, 968, 1189, 1190, 1670
BsmAI GTCTC 3 cut(s) 1023, 1245, 1377
BsmFI GGGAC 2 cut(s) 984, 1206
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 2 cut(s) 30, 1287
BsoBI CYCGRG 1 cut(s) 1503
Bsp1286I GDGCHC 1 cut(s) 1661
Bsp1407I TGTACA 1 cut(s) 260
Bsp143I GATC 8 cut(s) 603, 769, 814, 839, 1387, 1470, 1551, 1590
BspACI CCGC 1 cut(s) 1513
BspANI GGCC 2 cut(s) 30, 1287
BspCNI CTCAG 2 cut(s) 191, 1555
BspDI ATCGAT 1 cut(s) 1550
BspFNI CGCG 1 cut(s) 1513
BspHI TCATGA 1 cut(s) 1390
BspLI GGNNCC 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 3 cut(s) 847, 1478, 1585
BspT107I GGYRCC 1 cut(s) 371
BsrDI GCAATG 2 cut(s) 99, 1492
BsrGI TGTACA 1 cut(s) 260
BsrI ACTGG 2 cut(s) 674, 1542
BssECI CCNNGG 5 cut(s) 31, 681, 753, 1080, 1398
BssMI GATC 8 cut(s) 603, 769, 814, 839, 1387, 1470, 1551, 1590
BssSI CACGAG 1 cut(s) 90
BssT1I CCWWGG 4 cut(s) 31, 681, 753, 1398
Bst2BI CACGAG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 1081
Bst4CI ACNGT 6 cut(s) 285, 376, 404, 530, 1060, 1282
Bst6I CTCTTC 2 cut(s) 971, 1193
BstAUI TGTACA 1 cut(s) 260
BstBAI YACGTR 1 cut(s) 1412
BstC8I GCNNGC 5 cut(s) 28, 540, 691, 1448, 1452
BstDEI CTNAG 4 cut(s) 178, 1418, 1466, 1563
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 691
BstFNI CGCG 1 cut(s) 1513
BstHHI GCGC 1 cut(s) 1513
BstKTI GATC 8 cut(s) 606, 772, 817, 842, 1390, 1473, 1554, 1593
BstMAI GTCTC 3 cut(s) 1023, 1245, 1377
BstMBI GATC 8 cut(s) 603, 769, 814, 839, 1387, 1470, 1551, 1590
BstMWI GCNNNNNNNGC 1 cut(s) 1313
BstNI CCWGG 1 cut(s) 1081
BstNSI RCATGY 1 cut(s) 1450
BstSCI CCNGG 1 cut(s) 1079
BstSFI CTRYAG 3 cut(s) 276, 400, 798
BstSNI TACGTA 1 cut(s) 1412
BstUI CGCG 1 cut(s) 1513
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 3 cut(s) 314, 419, 1525
BstX2I RGATCY 1 cut(s) 839
BstYI RGATCY 1 cut(s) 839
Bsu15I ATCGAT 1 cut(s) 1550
Bsu36I CCTNAGG 1 cut(s) 1466
BsuRI GGCC 2 cut(s) 30, 1287
BsuTUI ATCGAT 1 cut(s) 1550
BtrI CACGTC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 691
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 6 cut(s) 263, 281, 372, 1065, 1287, 1329
Cac8I GCNNGC 5 cut(s) 28, 540, 691, 1448, 1452
CciI TCATGA 1 cut(s) 1390
CfoI GCGC 1 cut(s) 1513
Cfr13I GGNCC 1 cut(s) 1285
ClaI ATCGAT 1 cut(s) 1550
Csp6I GTAC 4 cut(s) 261, 372, 1413, 1462
CviAII CATG 7 cut(s) 514, 721, 1001, 1223, 1385, 1391, 1447
CviQI GTAC 4 cut(s) 261, 372, 1413, 1462
DdeI CTNAG 4 cut(s) 178, 1418, 1466, 1563
DpnI GATC 8 cut(s) 605, 771, 816, 841, 1389, 1472, 1553, 1592
DpnII GATC 8 cut(s) 603, 769, 814, 839, 1387, 1470, 1551, 1590
DraI TTTAAA 1 cut(s) 586
DriI GACNNNNNGTC 1 cut(s) 1073
Eam1104I CTCTTC 2 cut(s) 971, 1193
Eam1105I GACNNNNNGTC 1 cut(s) 1073
EarI CTCTTC 2 cut(s) 971, 1193
Ecl136II GAGCTC 1 cut(s) 1659
Eco105I TACGTA 1 cut(s) 1412
Eco130I CCWWGG 4 cut(s) 31, 681, 753, 1398
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 1661
Eco53kI GAGCTC 1 cut(s) 1659
Eco57I CTGAAG 4 cut(s) 287, 995, 1217, 1328
Eco81I CCTNAGG 1 cut(s) 1466
Eco88I CYCGRG 1 cut(s) 1503
EcoICRI GAGCTC 1 cut(s) 1659
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 1079
EcoT14I CCWWGG 4 cut(s) 31, 681, 753, 1398
EcoT38I GRGCYC 1 cut(s) 1661
ErhI CCWWGG 4 cut(s) 31, 681, 753, 1398
FaeI CATG 7 cut(s) 517, 724, 1004, 1226, 1388, 1394, 1450
FaqI GGGAC 2 cut(s) 984, 1206
FatI CATG 7 cut(s) 513, 720, 1000, 1222, 1384, 1390, 1446
FbaI TGATCA 2 cut(s) 603, 1387
FblI GTMKAC 4 cut(s) 11, 797, 875, 1097
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 698
FriOI GRGCYC 1 cut(s) 1661
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 6 cut(s) 81, 123, 189, 492, 843, 1350
GlaI GCGC 1 cut(s) 1512
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 1559
HaeIII GGCC 2 cut(s) 30, 1287
HapII CCGG 1 cut(s) 1443
HhaI GCGC 1 cut(s) 1513
Hin1II CATG 7 cut(s) 517, 724, 1004, 1226, 1388, 1394, 1450
Hin6I GCGC 1 cut(s) 1511
HinP1I GCGC 1 cut(s) 1511
HinfI GANTC 7 cut(s) 428, 881, 1103, 1364, 1547, 1596, 1650
HpaII CCGG 1 cut(s) 1443
HphI GGTGA 4 cut(s) 158, 237, 1069, 1653
Hpy166II GTNNAC 5 cut(s) 12, 261, 798, 876, 1098
Hpy188I TCNGA 9 cut(s) 181, 235, 306, 484, 766, 814, 1347, 1426, 1595
Hpy8I GTNNAC 5 cut(s) 12, 261, 798, 876, 1098
Hpy99I CGWCG 1 cut(s) 1071
HpyAV CCTTC 4 cut(s) 860, 1082, 1537, 1674
HpyCH4III ACNGT 6 cut(s) 285, 376, 404, 530, 1060, 1282
HpyCH4IV ACGT 2 cut(s) 161, 1411
HpyF10VI GCNNNNNNNGC 1 cut(s) 1313
HpyF3I CTNAG 4 cut(s) 178, 1418, 1466, 1563
HpySE526I ACGT 2 cut(s) 161, 1411
Hsp92II CATG 7 cut(s) 517, 724, 1004, 1226, 1388, 1394, 1450
HspAI GCGC 1 cut(s) 1511
KpnI GGTACC 1 cut(s) 375
Ksp22I TGATCA 2 cut(s) 603, 1387
Kzo9I GATC 8 cut(s) 603, 769, 814, 839, 1387, 1470, 1551, 1590
LmnI GCTCC 1 cut(s) 1508
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 6 cut(s) 13, 226, 347, 525, 676, 755
MaeI CTAG 6 cut(s) 81, 123, 189, 492, 843, 1350
MaeII ACGT 2 cut(s) 161, 1411
MaeIII GTNAC 3 cut(s) 162, 243, 1075
MalI GATC 8 cut(s) 605, 771, 816, 841, 1389, 1472, 1553, 1592
MboI GATC 8 cut(s) 603, 769, 814, 839, 1387, 1470, 1551, 1590
MflI RGATCY 1 cut(s) 839
MhlI GDGCHC 1 cut(s) 1661
MlyI GAGTC 3 cut(s) 875, 1097, 1590
MmeI TCCRAC 1 cut(s) 1618
MroXI GAANNNNTTC 2 cut(s) 555, 1338
MseI TTAA 5 cut(s) 452, 585, 591, 666, 1430
MslI CAYNNNNRTG 3 cut(s) 169, 834, 1389
MspI CCGG 1 cut(s) 1443
MspR9I CCNGG 1 cut(s) 1081
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 1 cut(s) 1081
MvnI CGCG 1 cut(s) 1513
MwoI GCNNNNNNNGC 1 cut(s) 1313
NdeII GATC 8 cut(s) 603, 769, 814, 839, 1387, 1470, 1551, 1590
NlaIII CATG 7 cut(s) 517, 724, 1004, 1226, 1388, 1394, 1450
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 3 cut(s) 162, 243, 1075
NspI RCATGY 1 cut(s) 1450
PaeI GCATGC 1 cut(s) 1450
PaeR7I CTCGAG 1 cut(s) 1503
PagI TCATGA 1 cut(s) 1390
PceI AGGCCT 1 cut(s) 30
PctI GAATGC 1 cut(s) 297
PdmI GAANNNNTTC 2 cut(s) 555, 1338
PfeI GAWTC 4 cut(s) 428, 1364, 1547, 1650
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 3 cut(s) 875, 1097, 1590
PpsI GAGTC 3 cut(s) 875, 1097, 1590
Ppu21I YACGTR 1 cut(s) 1412
PsiI TTATAA 2 cut(s) 657, 1529
Psp124BI GAGCTC 1 cut(s) 1661
Psp6I CCWGG 1 cut(s) 1079
PspGI CCWGG 1 cut(s) 1079
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 1285
PspXI VCTCGAGB 1 cut(s) 1503
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 1 cut(s) 839
RsaI GTAC 4 cut(s) 262, 373, 1414, 1463
RsaNI GTAC 4 cut(s) 261, 372, 1413, 1462
RseI CAYNNNNRTG 3 cut(s) 169, 834, 1389
SacI GAGCTC 1 cut(s) 1661
SaqAI TTAA 5 cut(s) 452, 585, 591, 666, 1430
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 8 cut(s) 603, 769, 814, 839, 1387, 1470, 1551, 1590
Sau96I GGNCC 1 cut(s) 1285
SchI GAGTC 3 cut(s) 875, 1097, 1590
ScrFI CCNGG 1 cut(s) 1081
SduI GDGCHC 1 cut(s) 1661
SfaNI GCATC 6 cut(s) 13, 226, 347, 525, 676, 755
SfcI CTRYAG 3 cut(s) 276, 400, 798
Sfr274I CTCGAG 1 cut(s) 1503
SlaI CTCGAG 1 cut(s) 1503
SmiMI CAYNNNNRTG 3 cut(s) 169, 834, 1389
SmlI CTYRAG 5 cut(s) 647, 890, 1112, 1503, 1621
SmoI CTYRAG 5 cut(s) 647, 890, 1112, 1503, 1621
SnaBI TACGTA 1 cut(s) 1412
SphI GCATGC 1 cut(s) 1450
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 1 cut(s) 1513
SspI AATATT 1 cut(s) 1587
SspMI CTAG 6 cut(s) 81, 123, 189, 492, 843, 1350
SstI GAGCTC 1 cut(s) 1661
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 1079
StyI CCWWGG 4 cut(s) 31, 681, 753, 1398
TaaI ACNGT 6 cut(s) 285, 376, 404, 530, 1060, 1282
TaiI ACGT 2 cut(s) 164, 1414
TaqI TCGA 4 cut(s) 1504, 1550, 1599, 1640
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 4 cut(s) 428, 1364, 1547, 1650
Tru1I TTAA 5 cut(s) 452, 585, 591, 666, 1430
Tru9I TTAA 5 cut(s) 452, 585, 591, 666, 1430
TscAI CASTG 6 cut(s) 263, 288, 372, 1065, 1287, 1336
TseFI GTSAC 3 cut(s) 162, 243, 1075
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 3 cut(s) 162, 243, 1075
TspDTI ATGAA 9 cut(s) 183, 441, 611, 989, 1211, 1407, 1506, 1656, 1659
TspRI CASTG 6 cut(s) 263, 288, 372, 1065, 1287, 1336
XagI CCTNNNNNAGG 1 cut(s) 24
XapI RAATTY 4 cut(s) 150, 554, 620, 760
XbaI TCTAGA 1 cut(s) 842
XceI RCATGY 1 cut(s) 1450
XhoI CTCGAG 1 cut(s) 1503
XmiI GTMKAC 4 cut(s) 11, 797, 875, 1097
XmnI GAANNNNTTC 2 cut(s) 555, 1338
XspI CTAG 6 cut(s) 81, 123, 189, 492, 843, 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.