Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015866

Physical Location & Seq

Genomic Coordinates Reverse (-)

5273526 .. 5275095

Gene Structure 1570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAATCGTTCAAGGAACAATACACGTTGGATGAAAGGCTCGCGGAGTCGCGGGAGATAATCGCTAAGTACCCTACTCGGATTCCAGTAATTGCTGAGAAGTATTGCAAAACGGATCTGCCTGCCATCGAGAAAAAGAAGTTTCTGGTTCCAAGAGATATGTCAGTTGGCCAATTCATCTACATATTGAGTGCTAGGTTACATTTGTCTCCTGGTAAAGCCTTATTCGTGTTTGTCAACAACACTCTCCCTCAAACTGCTGCTCTGATGGACTCGGTCTACGAATCTTACAAAGATGATGATGGATTCGTTTACATGTGCTATAGCAGTGAGAAAACCTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006508 GO:0006807 GO:0006914 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0016740 GO:0016787 GO:0016874 GO:0016877 GO:0019538 GO:0019776 GO:0019779 GO:0019783 GO:0019786 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043170 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0050896 GO:0051716 GO:0061919 GO:0070011 GO:0071496 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

115

Amino Acids

13.25

Weight (kDa)

7.7

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG8	PF02991	12 - 115	5.7e-44	Autophagy protein Atg8 ubiquitin like
APG12	PF04110	38 - 115	3.1e-07	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15580
fragaria_vesca	FvH4_1g26480
malus_domestica	MD09G1293100.v1.1
prunus_persica	Prupe.3G004300_v2.0.a1
pyrus_communis	pycom09g19600
rosa_chinensis	RchiOBHm_Chr3g0486541
rosa_laevigata	RLG00000023078
rosa_multiflora	Rmu_sc0003801.1_g000027 Rmu_sc0011408.1_g000005
rosa_roxburghii	Rroxscaffold_6G00395810
rosa_rugosa	Rorug03G0225000
rosa_samantha	Rh3AG275000 Rh3CG309300 Rh3DG306100
rosa_wichuraiana	Rw3G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	2 cut(s)	44, 52
AciI	CCGC	2 cut(s)	44, 52
AclWI	GGATC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	169
AfaI	GTAC	1 cut(s)	71
AflIII	ACRYGT	2 cut(s)	24, 315
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	3 cut(s)	134, 262, 296
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	322
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	247
Bsh1236I	CGCG	2 cut(s)	44, 52
BshFI	GGCC	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	2 cut(s)	44, 52
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	88
BspFNI	CGCG	2 cut(s)	44, 52
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	42, 123
BstDEI	CTNAG	2 cut(s)	66, 96
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	2 cut(s)	44, 52
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	2 cut(s)	44, 52
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	42, 123
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	3 cut(s)	40, 171, 221
CviKI_1	RGCY	3 cut(s)	40, 171, 221
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	66, 96
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	319
FaiI	YATR	4 cut(s)	161, 185, 317, 324
FatI	CATG	1 cut(s)	315
FauI	CCCGC	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	5 cut(s)	47, 82, 272, 284, 306
Hpy166II	GTNNAC	3 cut(s)	238, 280, 313
Hpy188I	TCNGA	2 cut(s)	81, 267
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	3 cut(s)	238, 280, 313
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	66, 96
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	5 cut(s)	99, 131, 135, 198, 225
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MflI	RGATCY	1 cut(s)	115
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	2 cut(s)	90, 173
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	56, 266
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	1 cut(s)	261
Mox20I	TGGCCA	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	44, 52
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	150
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	82, 284, 306
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	2 cut(s)	55, 266
PpsI	GAGTC	2 cut(s)	55, 266
PscI	ACATGT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	56, 266
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	3 cut(s)	29, 200, 341
SfcI	CTRYAG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	90, 173
SsiI	CCGC	2 cut(s)	44, 52
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	129
TaqII	GACCGA	1 cut(s)	265
TasI	AATT	2 cut(s)	90, 173
TfiI	GAWTC	3 cut(s)	82, 284, 306
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	17, 48, 166
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	275
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.