FvH4_1g26480

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015866
Physical Location & Seq
Forward (+)
18308388 .. 18309726
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26480.t1

Sequence Viewer

Length: 366 bp
ATGGGTAGAACAAAGTCATTCAAGGATGAGCTTACGTTCGAACAAAGGGTGGAAGAATCGCGGAATATTCTGGCCAATTACCCTGATCGAGTTCCGGTGATTGTTGAAAAGTATGCCAAGTGCGATCTTCCTCAGCTGGATAAGAGAAAATATCTTGTCCCCCGGGACACGTCTGTCGGGCAATTCATTTACATTTTGAGCGACAGACTTCGTCTACACCCTGGAGAAGCTCTCTTCGTATTAGTACAGAATACACTACCCCCAACAGCTAGTTTGATGAACTTTGTCTATGAATCGTACAAGGACGAGGATGGATTTCTGTACATGTGTTACAGTACGGAGAAAACCTTTGGTGATGCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

122

Amino Acids

14.09

Weight (kDa)

5.42

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG8 PF02991 15 - 118 5.7e-43 Autophagy protein Atg8 ubiquitin like
APG12 PF04110 39 - 118 6.8e-06 Ubiquitin-like autophagy protein Apg12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15580
fragaria_vesca FvH4_1g26480
malus_domestica MD09G1293100.v1.1
prunus_persica Prupe.3G004300_v2.0.a1
pyrus_communis pycom09g19600
rosa_chinensis RchiOBHm_Chr3g0486541
rosa_laevigata RLG00000023078
rosa_multiflora Rmu_sc0003801.1_g000027 Rmu_sc0011408.1_g000005
rosa_roxburghii Rroxscaffold_6G00395810
rosa_rugosa Rorug03G0225000
rosa_samantha Rh3AG275000 Rh3CG309300 Rh3DG306100
rosa_wichuraiana Rw3G024510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 214
AccII CGCG 1 cut(s) 61
AciI CCGC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 72
AfaI GTAC 4 cut(s) 246, 299, 323, 337
AflIII ACRYGT 2 cut(s) 168, 324
AgsI TTSAA 2 cut(s) 22, 107
AjiI CACGTC 1 cut(s) 171
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 4 cut(s) 31, 136, 230, 269
AluI AGCT 4 cut(s) 31, 136, 230, 269
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 1 cut(s) 72
AsuC2I CCSGG 2 cut(s) 163, 164
AsuHPI GGTGA 2 cut(s) 109, 365
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 162
BalI TGGCCA 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 132
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 222
BcnI CCSGG 2 cut(s) 163, 164
BfaI CTAG 1 cut(s) 270
Bme1390I CCNGG 3 cut(s) 163, 164, 222
BmeT110I CYCGRG 1 cut(s) 162
BmgBI CACGTC 1 cut(s) 171
BmrFI CCNGG 3 cut(s) 163, 164, 222
BmsI GCATC 1 cut(s) 346
BplI GAGNNNNNCTC 2 cut(s) 216, 248
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 39
BpuMI CCSGG 2 cut(s) 163, 164
BsaJI CCNNGG 3 cut(s) 161, 162, 220
BsaWI WCCGGW 1 cut(s) 94
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 161, 162, 220
BseGI GGATG 2 cut(s) 31, 316
BseMII CTCAG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 95, 163
BslFI GGGAC 2 cut(s) 143, 179
BsmFI GGGAC 2 cut(s) 143, 179
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 39
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 2 cut(s) 85, 124
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 61
BspT104I TTCGAA 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 321
BssECI CCNNGG 3 cut(s) 161, 162, 220
BssMI GATC 2 cut(s) 85, 124
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 31, 316
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 2 cut(s) 88, 127
BstMBI GATC 2 cut(s) 85, 124
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 3 cut(s) 161, 162, 220
BstUI CGCG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 74
BtrI CACGTC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 31, 316
Cac8I GCNNGC 1 cut(s) 361
Cfr9I CCCGGG 1 cut(s) 162
Csp6I GTAC 4 cut(s) 245, 298, 322, 336
CviAII CATG 1 cut(s) 325
CviJI RGCY 5 cut(s) 31, 74, 136, 230, 269
CviKI_1 RGCY 5 cut(s) 31, 74, 136, 230, 269
CviQI GTAC 4 cut(s) 245, 298, 322, 336
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 87, 126
DpnII GATC 2 cut(s) 85, 124
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 328
FaiI YATR 3 cut(s) 114, 291, 326
FaqI GGGAC 2 cut(s) 143, 179
FatI CATG 1 cut(s) 324
FblI GTMKAC 1 cut(s) 214
FokI GGATG 2 cut(s) 38, 323
FspBI CTAG 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 74
HapII CCGG 2 cut(s) 95, 163
Hin1II CATG 1 cut(s) 328
HinfI GANTC 2 cut(s) 56, 293
HpaII CCGG 2 cut(s) 95, 163
HphI GGTGA 2 cut(s) 109, 365
Hpy166II GTNNAC 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 2 cut(s) 35, 170
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 35, 170
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 2 cut(s) 85, 124
LpnPI CCDG 7 cut(s) 56, 96, 108, 122, 176, 207, 234
LweI GCATC 1 cut(s) 346
MaeI CTAG 1 cut(s) 270
MaeII ACGT 2 cut(s) 35, 170
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 87, 126
MboI GATC 2 cut(s) 85, 124
MboII GAAGA 3 cut(s) 65, 119, 226
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 2 cut(s) 76, 182
MluNI TGGCCA 1 cut(s) 74
MnlI CCTC 2 cut(s) 141, 301
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 2 cut(s) 95, 163
MspR9I CCNGG 3 cut(s) 163, 164, 222
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 61
NciI CCSGG 2 cut(s) 163, 164
NdeII GATC 2 cut(s) 85, 124
NlaIII CATG 1 cut(s) 328
NspI RCATGY 1 cut(s) 328
NspV TTCGAA 1 cut(s) 39
PciI ACATGT 1 cut(s) 324
PfeI GAWTC 2 cut(s) 56, 293
PflFI GACNNNGTC 1 cut(s) 210
PscI ACATGT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 4 cut(s) 246, 299, 323, 337
RsaNI GTAC 4 cut(s) 245, 298, 322, 336
Sau3AI GATC 2 cut(s) 85, 124
ScrFI CCNGG 3 cut(s) 163, 164, 222
SetI ASST 7 cut(s) 33, 38, 138, 173, 232, 271, 350
SfaNI GCATC 1 cut(s) 346
SfuI TTCGAA 1 cut(s) 39
SmaI CCCGGG 1 cut(s) 164
Sse9I AATT 2 cut(s) 76, 182
SsiI CCGC 1 cut(s) 61
SspI AATATT 1 cut(s) 67
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 3 cut(s) 161, 162, 220
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 2 cut(s) 38, 173
TaqI TCGA 2 cut(s) 39, 88
TasI AATT 2 cut(s) 76, 182
TatI WGTACW 2 cut(s) 244, 321
TfiI GAWTC 2 cut(s) 56, 293
TspDTI ATGAA 3 cut(s) 175, 293, 306
TspGWI ACGGA 1 cut(s) 353
TspMI CCCGGG 1 cut(s) 162
Tth111I GACNNNGTC 1 cut(s) 210
XceI RCATGY 1 cut(s) 328
XmaI CCCGGG 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 214
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.