Rh3DG306100

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015866
Physical Location & Seq
Forward (+)
32548818 .. 32558138
9321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG306100.1

Sequence Viewer

Length: 366 bp
ATGGGTAGAACAAAATCATTCAAGGACGAGCTTACATTCGAGCAAAGGGTGCAAGAATCGCGGGATGTTCAGGCCAAATACCCTGATCGAGTTCCGGTGATTGTTGAAAAGTATGCCAAGTGCGACCTTCCTCAGATGGAAAAGAGAAGATATCTTGTCCCGCGGGATATGTCTGTCGGGCAATTCATTTATACTCTGAGCGAGAGACTTCATCTGGCCCCTGGAAAAGCTCTCTTCGTATTTGTAAAGGATACTTTACCCCCAATAGCTAGTATGATGAACTTTGTCTATGACTCCTACAAGGACGAGGATGGATTTCTGTACATGTGTTATAGCACCGAGAAAACCTTTGGTCATGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

121

Amino Acids

14.17

Weight (kDa)

7.73

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG8 PF02991 15 - 118 5.6e-42 Autophagy protein Atg8 ubiquitin like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15580
fragaria_vesca FvH4_1g26480
malus_domestica MD09G1293100.v1.1
prunus_persica Prupe.3G004300_v2.0.a1
pyrus_communis pycom09g19600
rosa_chinensis RchiOBHm_Chr3g0486541
rosa_laevigata RLG00000023078
rosa_multiflora Rmu_sc0003801.1_g000027 Rmu_sc0011408.1_g000005
rosa_roxburghii Rroxscaffold_6G00395810
rosa_rugosa Rorug03G0225000
rosa_samantha Rh3AG275000 Rh3CG309300 Rh3DG306100
rosa_wichuraiana Rw3G024510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 61, 163
AciI CCGC 3 cut(s) 61, 161, 163
AfaI GTAC 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 2 cut(s) 22, 107
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 4 cut(s) 31, 230, 269, 363
AluI AGCT 4 cut(s) 31, 230, 269, 363
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 2 cut(s) 72, 216
AspS9I GGNCC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 359
BccI CCATC 2 cut(s) 130, 305
BciT130I CCWGG 1 cut(s) 222
BciVI GTATCC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 270, 360
BfuI GTATCC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 222
BmtI GCTAGC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 161, 220
BsaWI WCCGGW 1 cut(s) 94
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 161, 220
BseGI GGATG 2 cut(s) 70, 316
BseMII CTCAG 2 cut(s) 146, 188
Bsh1236I CGCG 2 cut(s) 61, 163
BshFI GGCC 2 cut(s) 74, 218
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 74, 218
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 3 cut(s) 61, 161, 163
BspANI GGCC 2 cut(s) 74, 218
BspCNI CTCAG 2 cut(s) 145, 189
BspFNI CGCG 2 cut(s) 61, 163
BspLI GGNNCC 1 cut(s) 219
BspOI GCTAGC 1 cut(s) 363
BsrGI TGTACA 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 161, 220
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 49
BstAUI TGTACA 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 132, 197
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 70, 316
BstFNI CGCG 2 cut(s) 61, 163
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 49, 58
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 2 cut(s) 61, 163
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 74, 218
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 2 cut(s) 70, 316
Cac8I GCNNGC 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 217
Cfr42I CCGCGG 1 cut(s) 164
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 325, 356
CviJI RGCY 6 cut(s) 31, 74, 218, 230, 269, 363
CviKI_1 RGCY 6 cut(s) 31, 74, 218, 230, 269, 363
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 132, 197
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco32I GATATC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 152
FaeI CATG 2 cut(s) 328, 359
FaiI YATR 8 cut(s) 114, 170, 192, 275, 291, 326, 333, 357
FaqI GGGAC 1 cut(s) 143
FatI CATG 2 cut(s) 324, 355
FauI CCCGC 3 cut(s) 54, 156, 168
FokI GGATG 2 cut(s) 77, 323
FspBI CTAG 2 cut(s) 270, 360
HaeIII GGCC 2 cut(s) 74, 218
HapII CCGG 1 cut(s) 95
Hin1II CATG 2 cut(s) 328, 359
HinfI GANTC 2 cut(s) 56, 293
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 135, 198
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 58
HpyF3I CTNAG 2 cut(s) 132, 197
Hsp92II CATG 2 cut(s) 328, 359
KspI CCGCGG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 6 cut(s) 56, 96, 108, 200, 207, 234
MaeI CTAG 2 cut(s) 270, 360
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 159, 226
MluCI AATT 1 cut(s) 182
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 2 cut(s) 141, 301
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 2 cut(s) 61, 163
MwoI GCNNNNNNNGC 2 cut(s) 49, 58
NdeII GATC 1 cut(s) 85
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 2 cut(s) 328, 359
NlaIV GGNNCC 1 cut(s) 219
NspI RCATGY 1 cut(s) 328
PciI ACATGT 1 cut(s) 324
PfeI GAWTC 1 cut(s) 56
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PscI ACATGT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 217
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SacII CCGCGG 1 cut(s) 164
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 222
SetI ASST 6 cut(s) 33, 129, 232, 271, 350, 365
Sfr303I CCGCGG 1 cut(s) 164
SgrBI CCGCGG 1 cut(s) 164
Sse9I AATT 1 cut(s) 182
SsiI CCGC 3 cut(s) 61, 161, 163
SspMI CTAG 2 cut(s) 270, 360
StyD4I CCNGG 1 cut(s) 220
TaqI TCGA 2 cut(s) 39, 88
TasI AATT 1 cut(s) 182
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 1 cut(s) 56
TspDTI ATGAA 3 cut(s) 175, 200, 293
XceI RCATGY 1 cut(s) 328
XspI CTAG 2 cut(s) 270, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.