Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003801.1

Orthogroup ID

OG0015866

Physical Location & Seq

Genomic Coordinates Forward (+)

102007 .. 103668

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003801.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgggtagaacaaaatcgttcaaggacgagcttacattcgagcaaagggtgcaagaatcgcgggatgttcaggccaaataccctgatcgagttccggtgattgttgaaaagtatgccaagtgcgaccttcctcagatggaaaagagaagatatcttgtcccccgggatatgtctgtcgggcaattcatttatactttgagcgagagacttcatctggcccctggaaaagctctcttcgtatttgtaaaggatactttacccccaatagctagtatgatgaactttgtctacgactcctacaaggacgaggatggatttctgtacatgtgttatagcaccgagaaaacctttggttttggtcatgctagccaatatcgaaagacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

128

Amino Acids

15.05

Weight (kDa)

8.81

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15580
fragaria_vesca	FvH4_1g26480
malus_domestica	MD09G1293100.v1.1
prunus_persica	Prupe.3G004300_v2.0.a1
pyrus_communis	pycom09g19600
rosa_chinensis	RchiOBHm_Chr3g0486541
rosa_laevigata	RLG00000023078
rosa_multiflora	Rmu_sc0003801.1_g000027 Rmu_sc0011408.1_g000005
rosa_roxburghii	Rroxscaffold_6G00395810
rosa_rugosa	Rorug03G0225000
rosa_samantha	Rh3AG275000 Rh3CG309300 Rh3DG306100
rosa_wichuraiana	Rw3G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	61
AciI	CCGC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	22, 107
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	3 cut(s)	31, 230, 269
AluI	AGCT	3 cut(s)	31, 230, 269
Alw26I	GTCTC	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	2 cut(s)	72, 216
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	2 cut(s)	163, 164
AsuHPI	GGTGA	1 cut(s)	109
AsuNHI	GCTAGC	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	162
BccI	CCATC	2 cut(s)	130, 305
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	244
BcnI	CCSGG	2 cut(s)	163, 164
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	270, 366
BfuI	GTATCC	1 cut(s)	244
Bme1390I	CCNGG	3 cut(s)	163, 164, 222
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	3 cut(s)	163, 164, 222
BmtI	GCTAGC	1 cut(s)	369
BpuMI	CCSGG	2 cut(s)	163, 164
BsaJI	CCNNGG	3 cut(s)	161, 162, 220
BsaWI	WCCGGW	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	161, 162, 220
BseGI	GGATG	2 cut(s)	70, 316
BseMII	CTCAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	74, 218
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	95, 163
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	74, 218
BsoBI	CYCGRG	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	74, 218
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	219
BspOI	GCTAGC	1 cut(s)	369
BsrGI	TGTACA	1 cut(s)	321
BssECI	CCNNGG	3 cut(s)	161, 162, 220
BssMI	GATC	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	70, 316
BstFNI	CGCG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 58
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	3 cut(s)	161, 162, 220
BstUI	CGCG	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	74, 218
BtsCI	GGATG	2 cut(s)	70, 316
Cac8I	GCNNGC	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	217
Cfr9I	CCCGGG	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	325, 362, 384
CviJI	RGCY	6 cut(s)	31, 74, 218, 230, 269, 369
CviKI_1	RGCY	6 cut(s)	31, 74, 218, 230, 269, 369
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	152
FaeI	CATG	3 cut(s)	328, 365, 387
FaiI	YATR	8 cut(s)	114, 170, 192, 275, 326, 333, 363, 385
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	3 cut(s)	324, 361, 383
FauI	CCCGC	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	288
FokI	GGATG	2 cut(s)	77, 323
FspBI	CTAG	2 cut(s)	270, 366
HaeIII	GGCC	2 cut(s)	74, 218
HapII	CCGG	2 cut(s)	95, 163
Hin1II	CATG	3 cut(s)	328, 365, 387
HinfI	GANTC	2 cut(s)	56, 293
HpaII	CCGG	2 cut(s)	95, 163
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	135
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 58
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	328, 365, 387
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	7 cut(s)	56, 96, 108, 176, 200, 207, 234
MaeI	CTAG	2 cut(s)	270, 366
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	2 cut(s)	159, 226
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	2 cut(s)	141, 301
MspI	CCGG	2 cut(s)	95, 163
MspR9I	CCNGG	3 cut(s)	163, 164, 222
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	49, 58
NciI	CCSGG	2 cut(s)	163, 164
NdeII	GATC	1 cut(s)	85
NheI	GCTAGC	1 cut(s)	365
NlaIII	CATG	3 cut(s)	328, 365, 387
NlaIV	GGNNCC	1 cut(s)	219
NspI	RCATGY	1 cut(s)	328
PciI	ACATGT	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	56
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PscI	ACATGT	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	217
PsrI	GAACNNNNNNTAC	2 cut(s)	272, 304
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	163, 164, 222
SetI	ASST	5 cut(s)	33, 129, 232, 271, 350
SmaI	CCCGGG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	2 cut(s)	270, 366
StyD4I	CCNGG	3 cut(s)	161, 162, 220
TaqI	TCGA	3 cut(s)	39, 88, 376
TasI	AATT	1 cut(s)	182
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	175, 200, 293
TspMI	CCCGGG	1 cut(s)	162
XceI	RCATGY	1 cut(s)	328
XmaI	CCCGGG	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	2 cut(s)	270, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.