Rroxscaffold_6G00395810

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015866
Physical Location & Seq
Reverse (-)
16974534 .. 16976299
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395810.1

Sequence Viewer

Length: 366 bp
ATGGGTAGAACAAAATCATTCAAGGACGAGCTTACATTCGAACAAAGGGTGGAAGAATCGCGGGATGTTCAGGCCAAATACCCTGATCGAGTTCCGGTAATTGTTGAGAAGTATGCCAAGTGCGACCTTCCTCAAATGGAAAAGAGAAGATATCTTGTCCCCCGGGACATGTCTGTCGGGCAATTCATTTACACTTTGAGCGAGAGGCTTCATCTGGCCCCTGGAAAAGCTCTCTTCGTCTTTGTAAAGGATACTTTACCCCCAATAGCTAGTATGATGAACTTTGTCTATGACTCCTACAAGGACGAGGATGGATTTCTATACATGTGTTATAGCACCGAGAAAACCTTTGGTCATGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

121

Amino Acids

14.17

Weight (kDa)

6.73

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG8 PF02991 15 - 118 5.6e-42 Autophagy protein Atg8 ubiquitin like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15580
fragaria_vesca FvH4_1g26480
malus_domestica MD09G1293100.v1.1
prunus_persica Prupe.3G004300_v2.0.a1
pyrus_communis pycom09g19600
rosa_chinensis RchiOBHm_Chr3g0486541
rosa_laevigata RLG00000023078
rosa_multiflora Rmu_sc0003801.1_g000027 Rmu_sc0011408.1_g000005
rosa_roxburghii Rroxscaffold_6G00395810
rosa_rugosa Rorug03G0225000
rosa_samantha Rh3AG275000 Rh3CG309300 Rh3DG306100
rosa_wichuraiana Rw3G024510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AccII CGCG 1 cut(s) 61
AciI CCGC 1 cut(s) 61
AflIII ACRYGT 2 cut(s) 168, 324
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 4 cut(s) 31, 230, 269, 363
AluI AGCT 4 cut(s) 31, 230, 269, 363
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 2 cut(s) 72, 216
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 2 cut(s) 163, 164
AsuII TTCGAA 1 cut(s) 39
AsuNHI GCTAGC 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 162
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 222
BciVI GTATCC 1 cut(s) 244
BcnI CCSGG 2 cut(s) 163, 164
BfaI CTAG 2 cut(s) 270, 360
BfuI GTATCC 1 cut(s) 244
Bme1390I CCNGG 3 cut(s) 163, 164, 222
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 3 cut(s) 163, 164, 222
BmtI GCTAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 39
BpuMI CCSGG 2 cut(s) 163, 164
BsaJI CCNNGG 3 cut(s) 161, 162, 220
BsaWI WCCGGW 1 cut(s) 94
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 161, 162, 220
BseGI GGATG 2 cut(s) 70, 316
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 74, 218
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 95, 163
BslFI GGGAC 2 cut(s) 143, 179
BsmFI GGGAC 2 cut(s) 143, 179
BsnI GGCC 2 cut(s) 74, 218
BsoBI CYCGRG 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 39
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 61
BspANI GGCC 2 cut(s) 74, 218
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 219
BspOI GCTAGC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 39
BssECI CCNNGG 3 cut(s) 161, 162, 220
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 361
BstF5I GGATG 2 cut(s) 70, 316
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 2 cut(s) 172, 328
BstSCI CCNGG 3 cut(s) 161, 162, 220
BstUI CGCG 1 cut(s) 61
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 74, 218
BtsCI GGATG 2 cut(s) 70, 316
Cac8I GCNNGC 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 217
Cfr9I CCCGGG 1 cut(s) 162
CviAII CATG 3 cut(s) 169, 325, 356
CviJI RGCY 7 cut(s) 31, 74, 208, 218, 230, 269, 363
CviKI_1 RGCY 7 cut(s) 31, 74, 208, 218, 230, 269, 363
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco32I GATATC 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 152
FaeI CATG 3 cut(s) 172, 328, 359
FaiI YATR 8 cut(s) 114, 170, 275, 291, 322, 326, 333, 357
FaqI GGGAC 2 cut(s) 143, 179
FatI CATG 3 cut(s) 168, 324, 355
FauI CCCGC 1 cut(s) 54
FokI GGATG 2 cut(s) 77, 323
FspBI CTAG 2 cut(s) 270, 360
HaeIII GGCC 2 cut(s) 74, 218
HapII CCGG 2 cut(s) 95, 163
Hin1II CATG 3 cut(s) 172, 328, 359
HinfI GANTC 2 cut(s) 56, 293
HpaII CCGG 2 cut(s) 95, 163
HpyAV CCTTC 1 cut(s) 137
Hsp92II CATG 3 cut(s) 172, 328, 359
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 56, 96, 108, 176, 200, 207, 234
MaeI CTAG 2 cut(s) 270, 360
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 65, 159, 226
MluCI AATT 2 cut(s) 99, 182
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 3 cut(s) 141, 198, 301
MspI CCGG 2 cut(s) 95, 163
MspR9I CCNGG 3 cut(s) 163, 164, 222
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 61
NciI CCSGG 2 cut(s) 163, 164
NdeII GATC 1 cut(s) 85
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 3 cut(s) 172, 328, 359
NlaIV GGNNCC 1 cut(s) 219
NspI RCATGY 2 cut(s) 172, 328
NspV TTCGAA 1 cut(s) 39
PciI ACATGT 2 cut(s) 168, 324
PfeI GAWTC 1 cut(s) 56
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PscI ACATGT 2 cut(s) 168, 324
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 3 cut(s) 163, 164, 222
SetI ASST 6 cut(s) 33, 129, 232, 271, 350, 365
SfuI TTCGAA 1 cut(s) 39
SmaI CCCGGG 1 cut(s) 164
Sse9I AATT 2 cut(s) 99, 182
SsiI CCGC 1 cut(s) 61
SspMI CTAG 2 cut(s) 270, 360
StyD4I CCNGG 3 cut(s) 161, 162, 220
TaqI TCGA 2 cut(s) 39, 88
TasI AATT 2 cut(s) 99, 182
TfiI GAWTC 1 cut(s) 56
TspDTI ATGAA 3 cut(s) 175, 200, 293
TspMI CCCGGG 1 cut(s) 162
XceI RCATGY 2 cut(s) 172, 328
XmaI CCCGGG 1 cut(s) 162
XspI CTAG 2 cut(s) 270, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.