Prupe.3G004300_v2.0.a1

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015866
Physical Location & Seq
Forward (+)
281998 .. 283247
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G004300.1

Sequence Viewer

Length: 387 bp
ATGGGTAGAACAAAATCATTCAAGGATGAGTTTACATTCGAACAAAGGGTTGAAGAATCACAGGACATCATGGCCAAATACCCTGATCGAGTACCCGTAATTGTGGAAAAGTATTCCAGGACCGACCTTCCTCAGATGGAAAAGAAAAAATACCTTGTCCCCCGAGACATGTCTGTCGGTCAATTCATTTACGTTCTGAGCAGCAGACTTCATCTGGCCCATGGAAAAGCTCTCTTTGTGTTTGTGAAGGATACTTTGCCTCAAACAGCCAGTTTGATGGACTCTGTCTATGAATCCTTCAAGGACAAGGATGGATTTCTGTACATGTGTTATAGCACTGAGAAAACCTTTGGGGGCTATGCCAATGTTCAGAGATATGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

129

Amino Acids

15.03

Weight (kDa)

7.78

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15580
fragaria_vesca FvH4_1g26480
malus_domestica MD09G1293100.v1.1
prunus_persica Prupe.3G004300_v2.0.a1
pyrus_communis pycom09g19600
rosa_chinensis RchiOBHm_Chr3g0486541
rosa_laevigata RLG00000023078
rosa_multiflora Rmu_sc0003801.1_g000027 Rmu_sc0011408.1_g000005
rosa_roxburghii Rroxscaffold_6G00395810
rosa_rugosa Rorug03G0225000
rosa_samantha Rh3AG275000 Rh3CG309300 Rh3DG306100
rosa_wichuraiana Rw3G024510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 72
AfaI GTAC 2 cut(s) 93, 323
AflIII ACRYGT 2 cut(s) 168, 324
AgsI TTSAA 3 cut(s) 22, 53, 301
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 2 cut(s) 72, 216
ApeKI GCWGC 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 120, 217
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 120
BalI TGGCCA 1 cut(s) 74
BbvI GCAGC 1 cut(s) 213
BccI CCATC 3 cut(s) 130, 271, 305
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 159
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 120, 217
BmrFI CCNGG 1 cut(s) 118
Bpu14I TTCGAA 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 2 cut(s) 31, 316
BseMII CTCAG 3 cut(s) 146, 188, 330
BseNI ACTGG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 213
BshFI GGCC 2 cut(s) 74, 218
BsiHKCI CYCGRG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 74, 218
BsoBI CYCGRG 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 39
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 1 cut(s) 85
Bsp19I CCATGG 1 cut(s) 220
BspANI GGCC 2 cut(s) 74, 218
BspCNI CTCAG 3 cut(s) 145, 189, 331
BspT104I TTCGAA 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 118
BstAUI TGTACA 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 132, 197, 339
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 2 cut(s) 31, 316
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 2 cut(s) 172, 328
BstSCI CCNGG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 277
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 74, 218
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 2 cut(s) 31, 316
BtsIMutI CAGTG 1 cut(s) 336
Cfr13I GGNCC 2 cut(s) 120, 217
Csp6I GTAC 2 cut(s) 92, 322
CviAII CATG 4 cut(s) 70, 169, 221, 325
CviJI RGCY 5 cut(s) 74, 218, 230, 269, 357
CviKI_1 RGCY 5 cut(s) 74, 218, 230, 269, 357
CviQI GTAC 2 cut(s) 92, 322
DdeI CTNAG 3 cut(s) 132, 197, 339
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 4 cut(s) 73, 172, 224, 328
FaiI YATR 8 cut(s) 71, 170, 222, 291, 326, 333, 360, 378
FaqI GGGAC 1 cut(s) 143
FatI CATG 4 cut(s) 69, 168, 220, 324
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 2 cut(s) 38, 323
Fsp4HI GCNGC 1 cut(s) 202
GluI GCNGC 1 cut(s) 202
HaeIII GGCC 2 cut(s) 74, 218
Hin1II CATG 4 cut(s) 73, 172, 224, 328
HinfI GANTC 3 cut(s) 56, 281, 293
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 3 cut(s) 135, 198, 372
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 3 cut(s) 137, 241, 307
HpyCH4IV ACGT 1 cut(s) 192
HpyF3I CTNAG 3 cut(s) 132, 197, 339
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 4 cut(s) 73, 172, 224, 328
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 6 cut(s) 47, 96, 103, 130, 200, 283
Lsp1109I GCAGC 1 cut(s) 213
MaeII ACGT 1 cut(s) 192
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 1 cut(s) 65
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 2 cut(s) 99, 182
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 2 cut(s) 141, 270
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
NcoI CCATGG 1 cut(s) 220
NdeII GATC 1 cut(s) 85
NlaIII CATG 4 cut(s) 73, 172, 224, 328
NspI RCATGY 2 cut(s) 172, 328
NspV TTCGAA 1 cut(s) 39
PciI ACATGT 2 cut(s) 168, 324
PfeI GAWTC 2 cut(s) 56, 293
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PscI ACATGT 2 cut(s) 168, 324
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspPI GGNCC 2 cut(s) 120, 217
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 2 cut(s) 93, 323
RsaNI GTAC 2 cut(s) 92, 322
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 120, 217
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 118
SetI ASST 5 cut(s) 129, 156, 195, 232, 350
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 1 cut(s) 120
Sse9I AATT 2 cut(s) 99, 182
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 220
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 39, 88
TaqII GACCGA 2 cut(s) 137, 167
TasI AATT 2 cut(s) 99, 182
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 2 cut(s) 56, 293
TscAI CASTG 1 cut(s) 343
TseI GCWGC 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 175, 200, 306
TspRI CASTG 1 cut(s) 343
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 120
XceI RCATGY 2 cut(s) 172, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.