AT3G15610

Contains the following InterPro domains WD40 repeat 2 (InterPro IPR019782), WD40 repeat-like-containing domain (InterPro IPR011046), WD40 repeat, conserved site (InterPro IPR019775), WD40-repeat-containing domain (InterPro IPR017986), WD40 YVTN repeat-like-containing domain (InterPro IPR015943), WD40 repeat (InterPro IPR001680), WD40 repeat, subgroup (InterPro IPR019781)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009140
Physical Location & Seq
Reverse (-)
5290847 .. 5293241
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15610.1

Sequence Viewer

Length: 1026 bp
ATGGAGAAGAAGAAAGTCGCGACTCCGCTAGTGTGCCATGGCCATTCGAGACCTGTTGTGGATTTGTTCTACAGTCCAATCACTCCTGATGGTTTCTTCCTCATCAGCGCAAGTAAAGATTCTCAACCAATGTTGAGAAATGGGGAAACTGGAGATTGGATTGGTACATTTGAAGGTCATAAAGGTGCTGTGTGGAGTTCTTGTCTTGATAACAATGCTTTACGTGCAGCTTCTGCATCTGCTGATTTTTCAGCGAAGCTTTGGGATGCTTTGACTGGGGATGTCTTGCATTCTTTTGAGCACAAGCATATTGTTCGAGCATGCGCCTTCTCTCAGGATACGAAATATCTAATCACAGGAGGATTTGAGAAAATTCTTCGTGTTTTCGACTTGAATCGCTTGGATGCACCTCCTACAGAAATTGATAAATCTCCTGGTTCTATCAGAACACTAACATGGCTTCACGGTGATCAAACAATATTAAGTTCTTGCACTGATATTGGTGGTGTGAGGTTATGGGATGTGAGGAGTGGCAAAATAGTGCAAACTCTAGAAACCAAGTCTCCTGTCACCAGTGCTGAAGTGAGTCAAGATGGACGGTATATAACAACTGCCGATGGGTCAACTGTTAAATTTTGGGATGCAAATCATTTTGGACTAGTGAAAAGTTACGACATGCCCTGCAATATCGAATCTGCATCGCTTGAGCCAAAATCTGGCAACAAATTCGTTGCTGGTGGAGAAGATATGTGGGTTCGACTCTTTGATTTCCACACCGGAAAGGAGATTGGATGCAACAAGGGACATCATGGTCCGGTTCACTGTGTGAGATTTGCACCAACAGGTGAGTCTTATGCTTCAGGGTCTGAAGATGGTACAATCAGAATTTGGCAAACTGGACCGGTGAATCCTGAAGAGATCAGCGAGTCAAAGCCGAAGCAGAGTGTGGATGAGGTTGCTCGTAAGATTGAAGGCTTTCACATTAACAAGGAAGGAAAAACCGCAGAGAAACCATCTGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
WD40

Protein Analysis

341

Amino Acids

37.36

Weight (kDa)

6.01

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EIF3I PF24805 9 - 297 5.3e-45 EIF3I
Beta-prop_WDR3_2nd PF25172 12 - 130 1.8e-07 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 13 - 229 2.3e-28 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 13 - 132 3.3e-13 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 29 - 130 4e-10 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 29 - 221 1.3e-13 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 33 - 227 3.6e-20 Prp19 WD40 domain
WD40_Gbeta PF25391 34 - 132 2.5e-07 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 68 - 202 1.3e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 77 - 239 1.2e-11 TEP-1 second beta-propeller
Beta-prop_ACSF4 PF13570 89 - 259 8.9e-06 Beta-alanine-activating enzyme, beta-propeller
WDR55 PF24796 98 - 208 2.4e-08 WDR55
Beta-prop_THOC3 PF25174 101 - 299 1.3e-32 THOC3 beta-propeller domain
WD40_MABP1-WDR62_1st PF24780 103 - 217 2e-06 MABP1/WDR62 first WD40 domain
WD40_Gbeta PF25391 156 - 297 3.3e-09 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 187 - 299 2.2e-08 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 197 - 305 2e-07 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 200 - 299 4.6e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 202 - 298 2.6e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 210 - 298 2.2e-10 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 229 - 306 6.9e-12 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 238 - 302 2.6e-12 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 241 - 299 7.5e-11 WDR5 beta-propeller domain
WD40 PF00400 262 - 297 1.4e-08 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 810
AccB7I CCANNNNNTGG 1 cut(s) 716
AccII CGCG 1 cut(s) 20
AciI CCGC 2 cut(s) 26, 1002
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 4 cut(s) 372, 632, 725, 885
AcuI CTGAAG 4 cut(s) 600, 843, 888, 933
AdeI CACNNNGTG 1 cut(s) 826
AfaI GTAC 2 cut(s) 166, 877
AfiI CCNNNNNNNGG 1 cut(s) 716
AgeI ACCGGT 1 cut(s) 901
AgsI TTSAA 3 cut(s) 173, 394, 971
AhlI ACTAGT 1 cut(s) 658
AjnI CCWGG 1 cut(s) 433
AluBI AGCT 2 cut(s) 230, 259
AluI AGCT 2 cut(s) 230, 259
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 2 cut(s) 43, 567
AlwNI CAGNNNCTG 2 cut(s) 233, 866
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 4 cut(s) 372, 632, 725, 885
AsiGI ACCGGT 1 cut(s) 901
Asp700I GAANNNNTTC 1 cut(s) 975
AspLEI GCGC 2 cut(s) 110, 326
AspS9I GGNCC 2 cut(s) 812, 899
AsuHPI GGTGA 4 cut(s) 479, 562, 857, 916
AvaII GGWCC 2 cut(s) 812, 899
BalI TGGCCA 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 239
BccI CCATC 5 cut(s) 83, 587, 611, 866, 1021
BcgI CGANNNNNNTGC 4 cut(s) 296, 330, 709, 743
BciT130I CCWGG 1 cut(s) 435
BciVI GTATCC 1 cut(s) 331
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 2 cut(s) 43, 567
BcuI ACTAGT 1 cut(s) 658
BfaI CTAG 3 cut(s) 29, 551, 659
BfmI CTRYAG 2 cut(s) 70, 414
BfuI GTATCC 1 cut(s) 331
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 2 cut(s) 812, 899
BmgT120I GGNCC 2 cut(s) 812, 899
BmrFI CCNGG 1 cut(s) 435
BmrI ACTGGG 1 cut(s) 285
BmsI GCATC 7 cut(s) 245, 256, 394, 631, 707, 782, 1009
BmuI ACTGGG 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 725
BsaAI YACGTR 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 37
BsaWI WCCGGW 3 cut(s) 776, 814, 901
BsaXI ACNNNNNCTCC 4 cut(s) 187, 217, 547, 577
Bsc4I CCNNNNNNNGG 1 cut(s) 716
Bse118I RCCGGY 1 cut(s) 901
Bse1I ACTGG 4 cut(s) 154, 280, 573, 901
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 7 cut(s) 271, 286, 409, 526, 646, 797, 955
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 1 cut(s) 716
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 4 cut(s) 154, 280, 573, 901
BseRI GAGGAG 1 cut(s) 541
BseXI GCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 1 cut(s) 42
BshTI ACCGGT 1 cut(s) 901
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 3 cut(s) 777, 815, 902
BslFI GGGAC 1 cut(s) 816
BslI CCNNNNNNNGG 1 cut(s) 716
BsmAI GTCTC 2 cut(s) 43, 567
BsmFI GGGAC 1 cut(s) 816
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 469, 918
Bsp19I CCATGG 1 cut(s) 37
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 2 cut(s) 26, 1002
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 901
BsrI ACTGG 4 cut(s) 154, 280, 573, 901
BssAI RCCGGY 1 cut(s) 901
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 2 cut(s) 469, 918
BssT1I CCWWGG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 5 cut(s) 74, 467, 600, 628, 824
Bst6I CTCTTC 1 cut(s) 909
BstAPI GCANNNNNTGC 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 7 cut(s) 271, 286, 409, 526, 646, 797, 955
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 2 cut(s) 110, 326
BstKTI GATC 2 cut(s) 472, 921
BstMAI GTCTC 2 cut(s) 43, 567
BstMBI GATC 2 cut(s) 469, 918
BstMWI GCNNNNNNNGC 2 cut(s) 224, 233
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 2 cut(s) 324, 679
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 2 cut(s) 70, 414
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 239
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 7 cut(s) 271, 286, 409, 526, 646, 797, 955
BtsIMutI CAGTG 3 cut(s) 492, 580, 820
BtuMI TCGCGA 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 322
CaiI CAGNNNCTG 2 cut(s) 233, 866
CfoI GCGC 2 cut(s) 110, 326
Cfr10I RCCGGY 1 cut(s) 901
Cfr13I GGNCC 2 cut(s) 812, 899
Csp6I GTAC 2 cut(s) 165, 876
CspAI ACCGGT 1 cut(s) 901
CviAII CATG 5 cut(s) 38, 321, 456, 676, 809
CviJI RGCY 7 cut(s) 42, 230, 259, 460, 709, 934, 975
CviKI_1 RGCY 7 cut(s) 42, 230, 259, 460, 709, 934, 975
CviQI GTAC 2 cut(s) 165, 876
DdeI CTNAG 1 cut(s) 333
DpnI GATC 2 cut(s) 471, 920
DpnII GATC 2 cut(s) 469, 918
DraIII CACNNNGTG 1 cut(s) 826
DrdI GACNNNNNNGTC 1 cut(s) 810
DseDI GACNNNNNNGTC 1 cut(s) 810
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
Eco130I CCWWGG 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 2 cut(s) 812, 899
Eco57I CTGAAG 4 cut(s) 600, 843, 888, 933
EcoRII CCWGG 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 5 cut(s) 41, 324, 459, 679, 812
FaqI GGGAC 1 cut(s) 816
FatI CATG 5 cut(s) 37, 320, 455, 675, 808
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 7 cut(s) 278, 293, 416, 533, 653, 804, 962
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 3 cut(s) 29, 551, 659
GlaI GCGC 2 cut(s) 109, 325
GluI GCNGC 1 cut(s) 228
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 42
HapII CCGG 3 cut(s) 777, 815, 902
HhaI GCGC 2 cut(s) 110, 326
Hin1II CATG 5 cut(s) 41, 324, 459, 679, 812
Hin6I GCGC 2 cut(s) 108, 324
HinP1I GCGC 2 cut(s) 108, 324
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 9 cut(s) 22, 119, 394, 586, 692, 759, 848, 907, 926
HpaII CCGG 3 cut(s) 777, 815, 902
HphI GGTGA 4 cut(s) 479, 562, 857, 916
Hpy166II GTNNAC 2 cut(s) 624, 820
Hpy188I TCNGA 4 cut(s) 446, 868, 884, 1018
Hpy188III TCNNGA 8 cut(s) 19, 48, 86, 206, 335, 551, 590, 911
Hpy8I GTNNAC 2 cut(s) 624, 820
HpyAV CCTTC 4 cut(s) 167, 337, 965, 986
HpyCH4III ACNGT 5 cut(s) 74, 467, 600, 628, 824
HpyCH4IV ACGT 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 233
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 5 cut(s) 41, 324, 459, 679, 812
HspAI GCGC 2 cut(s) 108, 324
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 2 cut(s) 469, 918
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 7 cut(s) 245, 256, 394, 631, 707, 782, 1009
MaeI CTAG 3 cut(s) 29, 551, 659
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 568, 668
MalI GATC 2 cut(s) 471, 920
MboI GATC 2 cut(s) 469, 918
MboII GAAGA 7 cut(s) 19, 22, 88, 368, 755, 881, 926
MhlI GDGCHC 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 5 cut(s) 372, 420, 632, 725, 885
MluNI TGGCCA 1 cut(s) 42
MlyI GAGTC 5 cut(s) 16, 595, 753, 857, 935
MnlI CCTC 6 cut(s) 110, 353, 420, 504, 519, 946
Mox20I TGGCCA 1 cut(s) 42
MroXI GAANNNNTTC 1 cut(s) 975
MscI TGGCCA 1 cut(s) 42
MseI TTAA 4 cut(s) 482, 630, 984, 1024
MslI CAYNNNNRTG 2 cut(s) 183, 454
Msp20I TGGCCA 1 cut(s) 42
MspI CCGG 3 cut(s) 777, 815, 902
MspR9I CCNGG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 1 cut(s) 435
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 224, 233
NcoI CCATGG 1 cut(s) 37
NdeII GATC 2 cut(s) 469, 918
NlaIII CATG 5 cut(s) 41, 324, 459, 679, 812
NmuCI GTSAC 1 cut(s) 568
NruI TCGCGA 1 cut(s) 20
NspI RCATGY 2 cut(s) 324, 679
PaeI GCATGC 1 cut(s) 324
PctI GAATGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 975
PfeI GAWTC 4 cut(s) 119, 394, 692, 907
PflMI CCANNNNNTGG 1 cut(s) 716
PinAI ACCGGT 1 cut(s) 901
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 5 cut(s) 16, 594, 753, 856, 934
PpsI GAGTC 5 cut(s) 16, 594, 753, 856, 934
Ppu21I YACGTR 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspPI GGNCC 2 cut(s) 812, 899
PstNI CAGNNNCTG 2 cut(s) 233, 866
RruI TCGCGA 1 cut(s) 20
RsaI GTAC 2 cut(s) 166, 877
RsaNI GTAC 2 cut(s) 165, 876
RseI CAYNNNNRTG 2 cut(s) 183, 454
SaqAI TTAA 4 cut(s) 482, 630, 984, 1024
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 469, 918
Sau96I GGNCC 2 cut(s) 812, 899
SchI GAGTC 5 cut(s) 16, 595, 753, 857, 935
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 1 cut(s) 303
SfaNI GCATC 7 cut(s) 245, 256, 394, 631, 707, 782, 1009
SfcI CTRYAG 2 cut(s) 70, 414
SinI GGWCC 2 cut(s) 812, 899
SmiMI CAYNNNNRTG 2 cut(s) 183, 454
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
SpeI ACTAGT 1 cut(s) 658
SphI GCATGC 1 cut(s) 324
Sse9I AATT 5 cut(s) 372, 420, 632, 725, 885
SsiI CCGC 2 cut(s) 26, 1002
SspI AATATT 1 cut(s) 480
SspMI CTAG 3 cut(s) 29, 551, 659
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 5 cut(s) 74, 467, 600, 628, 824
TaiI ACGT 1 cut(s) 226
TaqI TCGA 5 cut(s) 47, 316, 387, 690, 757
TasI AATT 5 cut(s) 372, 420, 632, 725, 885
TfiI GAWTC 4 cut(s) 119, 394, 692, 907
Tru1I TTAA 4 cut(s) 482, 630, 984, 1024
Tru9I TTAA 4 cut(s) 482, 630, 984, 1024
TscAI CASTG 3 cut(s) 499, 580, 827
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 568
TspRI CASTG 3 cut(s) 499, 580, 827
Van91I CCANNNNNTGG 1 cut(s) 716
VpaK11BI GGWCC 2 cut(s) 812, 899
XapI RAATTY 4 cut(s) 372, 632, 725, 885
XbaI TCTAGA 1 cut(s) 550
XceI RCATGY 2 cut(s) 324, 679
XmnI GAANNNNTTC 1 cut(s) 975
XspI CTAG 3 cut(s) 29, 551, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.