Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009140

Physical Location & Seq

Genomic Coordinates Reverse (-)

20539784 .. 20543274

Gene Structure 3491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G237000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGATAAGAAGAAGGTGGCCGTTCCGCTGGTTTGCCACGGTCATTCCCGTCCGGTTGTGGATCTGTTTTACAGTCCAATCACTCCCGATGGTTTCTTTCTCATCAGCGCCAGTAAGGATTCTAGCCCCATGCTGAGAAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGACATAAGGGTGCAGTATGGAGTTGCTGCTTGGATACTAATGCCCTACGTGCTGCAACTGCTTCTGCAGACTTCTCTGCGAAAGTTTGGGATGCATTAACAGGAGATGTGCTACACTCATTTGAACACAAGCACATTGTTCGAGCCTGTGCTTTCTCAGAGGATACACACCTTTTGCTTACTGGAGGAGTAGAGAAAGTTATCCGTATATATGATTTGAATCGTCCAGATGCCCCTCCAAGAGAAGTTGATAAATCCCCTGGTTCAGTCAGAACTGCTGCATGGCTACACAGTGATCAGACCATACTAAGTTCTTGCACTGATATGGGAGGTGTCAGATTATGGGATGTAAGAACTGGTAAAATAGTCCAAACACTTGAGACCAAATCATCTGTGACCAGTTCCGAAGTGAGTCAAGATGGTCGTTATATCACAACTGCTGATGGGTCTACTGTGAAGTTTTGGGATGCAAACTACTTTGGGTTGGTGAAGAGCTACAACATGCCGTGCACAGTAGAATCAGCTTCACTGGAACCAAAGTTTGGGAACAAGTTCATTGCTGGGGGAGAAGATATGTGGGTTCATGTATTTGATTTCCATACTGGTGATGAGATCGCATGCAACAAGGGTCACCATGGTCCTGTTCACTGTTTGCGTTTCTCTCCAGGAGGAGAATCATATGCCTCAGGATCCGAAGATGGTACCATTAGAATATGGCAGACTGGCCCCTTGACTCAAGACGAAACCGAGGCACTGGCGGCAAATGGAAAGGTGAAGGTACCTGCAGAAGAGGTTTCTCGAAAGATCGAGGGCTTCCACATTGCAGACGAGGGGAAATCGAAAGAGAAGGAAGAGGCAGGGAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0017015 GO:0023051 GO:0023057 GO:0030512 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:1903844 GO:1903845

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

348

Amino Acids

37.82

Weight (kDa)

5.54

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15470 AT1G52730 AT1G52730 AT1G52730 AT3G15610
fragaria_vesca	FvH4_1g03990
malus_domestica	MD02G1038200.v1.1 MD15G1178400.v1.1
prunus_persica	Prupe.7G237000_v2.0.a1 Prupe.7G237000_v2.0.a1
pyrus_communis	pycom02g03140 pycom15g16030
rosa_chinensis	RchiOBHm_Chr2g0089471
rosa_laevigata	RLG00000016033
rosa_multiflora	Rmu_sc0000197.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151900
rosa_rugosa	Rorug02G0001100
rosa_samantha	Rh2AG046300 Rh2BG044900 Rh2CG046700 Rh2DG046300
rosa_wichuraiana	Rw2G003630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	964
Acc65I	GGTACC	2 cut(s)	875, 952
AccB1I	GGYRCC	2 cut(s)	875, 952
AccB7I	CCANNNNNTGG	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	623
AciI	CCGC	2 cut(s)	26, 932
AclWI	GGATC	3 cut(s)	69, 858, 871
AcoI	YGGCCR	1 cut(s)	18
AfaI	GTAC	2 cut(s)	877, 954
AfiI	CCNNNNNNNGG	1 cut(s)	716
AgsI	TTSAA	3 cut(s)	173, 299, 394
AjnI	CCWGG	2 cut(s)	433, 838
AjuI	GAANNNNNNNTTGG	2 cut(s)	699, 731
AluBI	AGCT	2 cut(s)	669, 698
AluI	AGCT	2 cut(s)	669, 698
Alw21I	GWGCWC	1 cut(s)	686
Alw26I	GTCTC	2 cut(s)	140, 548
Alw44I	GTGCAC	1 cut(s)	682
AlwI	GGATC	3 cut(s)	69, 858, 871
AoxI	GGCC	2 cut(s)	18, 898
ApaLI	GTGCAC	1 cut(s)	682
ApeKI	GCWGC	3 cut(s)	201, 227, 452
Asp700I	GAANNNNTTC	1 cut(s)	725
Asp718I	GGTACC	2 cut(s)	875, 952
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	812, 899
AsuHPI	GGTGA	4 cut(s)	673, 791, 797, 958
AvaII	GGWCC	1 cut(s)	812
AxyI	CCTNAGG	1 cut(s)	859
BaeGI	GKGCMC	1 cut(s)	686
BamHI	GGATCC	1 cut(s)	863
BanI	GGYRCC	2 cut(s)	875, 952
Bbv12I	GWGCWC	1 cut(s)	686
BbvI	GCAGC	3 cut(s)	188, 214, 439
BccI	CCATC	4 cut(s)	83, 587, 611, 866
BceAI	ACGGC	2 cut(s)	5, 664
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	2 cut(s)	435, 840
BciVI	GTATCC	2 cut(s)	202, 331
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	140, 548
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	2 cut(s)	240, 957
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	964
BfuI	GTATCC	2 cut(s)	202, 331
BisI	GCNGC	4 cut(s)	202, 228, 453, 933
BlsI	GCNGC	4 cut(s)	203, 229, 454, 934
Bme1390I	CCNGG	2 cut(s)	435, 840
Bme18I	GGWCC	1 cut(s)	812
BmgT120I	GGNCC	2 cut(s)	812, 899
BmiI	GGNNCC	5 cut(s)	708, 865, 877, 901, 954
BmrFI	CCNGG	2 cut(s)	435, 840
BmsI	GCATC	3 cut(s)	256, 394, 631
BpmI	CTGGAG	3 cut(s)	171, 378, 822
BpuEI	CTTGAG	2 cut(s)	572, 894
BsaAI	YACGTR	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	37, 433, 808, 921
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	716
Bse1I	ACTGG	9 cut(s)	111, 154, 361, 535, 573, 708, 781, 901, 933
Bse21I	CCTNAGG	1 cut(s)	859
Bse3DI	GCAATG	2 cut(s)	729, 993
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	435, 840
BseDI	CCNNGG	4 cut(s)	37, 433, 808, 921
BseGI	GGATG	3 cut(s)	271, 526, 646
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	716
BseMI	GCAATG	2 cut(s)	729, 993
BseMII	CTCAG	3 cut(s)	125, 345, 873
BseNI	ACTGG	9 cut(s)	111, 154, 361, 535, 573, 708, 781, 901, 933
BseRI	GAGGAG	2 cut(s)	375, 858
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	3 cut(s)	188, 214, 439
BseYI	CCCAGC	1 cut(s)	734
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	20, 900
BshNI	GGYRCC	2 cut(s)	875, 952
BsiHKAI	GWGCWC	1 cut(s)	686
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	716
BsmAI	GTCTC	2 cut(s)	140, 548
BsnI	GGCC	2 cut(s)	20, 900
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	686
Bsp143I	GATC	5 cut(s)	61, 469, 786, 863, 978
Bsp19I	CCATGG	1 cut(s)	808
BspACI	CCGC	2 cut(s)	26, 932
BspANI	GGCC	2 cut(s)	20, 900
BspCNI	CTCAG	3 cut(s)	126, 344, 872
BspLI	GGNNCC	5 cut(s)	708, 865, 877, 901, 954
BspMAI	CTGCAG	2 cut(s)	244, 961
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	3 cut(s)	69, 858, 871
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	2 cut(s)	875, 952
BspTNI	GGTCTC	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	729, 993
BsrI	ACTGG	9 cut(s)	111, 154, 361, 535, 573, 708, 781, 901, 933
BssECI	CCNNGG	4 cut(s)	37, 433, 808, 921
BssMI	GATC	5 cut(s)	61, 469, 786, 863, 978
BssT1I	CCWWGG	1 cut(s)	808
Bst2UI	CCWGG	2 cut(s)	435, 840
Bst4CI	ACNGT	6 cut(s)	41, 74, 467, 628, 688, 824
Bst6I	CTCTTC	3 cut(s)	659, 957, 1020
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	793
BstDEI	CTNAG	4 cut(s)	134, 331, 482, 859
BstDSI	CCRYGG	2 cut(s)	37, 808
BstEII	GGTNACC	1 cut(s)	803
BstF5I	GGATG	3 cut(s)	271, 526, 646
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	5 cut(s)	64, 472, 789, 866, 981
BstMAI	GTCTC	2 cut(s)	140, 548
BstMBI	GATC	5 cut(s)	61, 469, 786, 863, 978
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 233, 932
BstNI	CCWGG	2 cut(s)	435, 840
BstNSI	RCATGY	2 cut(s)	679, 795
BstPI	GGTNACC	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	433, 838
BstSFI	CTRYAG	2 cut(s)	240, 957
BstSLI	GKGCMC	1 cut(s)	686
BstV1I	GCAGC	3 cut(s)	188, 214, 439
BstX2I	RGATCY	2 cut(s)	61, 863
BstYI	RGATCY	2 cut(s)	61, 863
Bsu36I	CCTNAGG	1 cut(s)	859
BsuI	GTATCC	2 cut(s)	202, 331
BsuRI	GGCC	2 cut(s)	20, 900
BtgI	CCRYGG	2 cut(s)	37, 808
BtsCI	GGATG	3 cut(s)	271, 526, 646
BtsIMutI	CAGTG	5 cut(s)	472, 492, 701, 820, 926
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	1 cut(s)	793
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	812, 899
Csp6I	GTAC	2 cut(s)	876, 953
CviAII	CATG	6 cut(s)	130, 456, 676, 758, 792, 809
CviJI	RGCY	8 cut(s)	20, 126, 320, 460, 669, 698, 900, 987
CviKI_1	RGCY	8 cut(s)	20, 126, 320, 460, 669, 698, 900, 987
CviQI	GTAC	2 cut(s)	876, 953
DdeI	CTNAG	4 cut(s)	134, 331, 482, 859
DpnI	GATC	5 cut(s)	63, 471, 788, 865, 980
DpnII	GATC	5 cut(s)	61, 469, 786, 863, 978
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	3 cut(s)	659, 957, 1020
EarI	CTCTTC	3 cut(s)	659, 957, 1020
Eco130I	CCWWGG	1 cut(s)	808
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	812
Eco81I	CCTNAGG	1 cut(s)	859
Eco91I	GGTNACC	1 cut(s)	803
EcoO65I	GGTNACC	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	433, 838
EcoT14I	CCWWGG	1 cut(s)	808
EcoT22I	ATGCAT	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	808
FaeI	CATG	6 cut(s)	133, 459, 679, 761, 795, 812
FatI	CATG	6 cut(s)	129, 455, 675, 757, 791, 808
FauNDI	CATATG	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	623
Fnu4HI	GCNGC	4 cut(s)	202, 228, 453, 933
FokI	GGATG	3 cut(s)	278, 533, 653
Fsp4HI	GCNGC	4 cut(s)	202, 228, 453, 933
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	4 cut(s)	202, 228, 453, 933
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	3 cut(s)	171, 378, 822
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	20, 900
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	6 cut(s)	133, 459, 679, 761, 795, 812
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	6 cut(s)	119, 394, 586, 692, 848, 907
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	4 cut(s)	673, 791, 797, 958
Hpy166II	GTNNAC	3 cut(s)	624, 684, 820
Hpy188I	TCNGA	6 cut(s)	334, 446, 474, 512, 580, 868
Hpy188III	TCNNGA	6 cut(s)	86, 401, 590, 861, 911, 972
Hpy8I	GTNNAC	3 cut(s)	624, 684, 820
HpyAV	CCTTC	4 cut(s)	7, 167, 943, 1015
HpyCH4III	ACNGT	6 cut(s)	41, 74, 467, 628, 688, 824
HpyCH4IV	ACGT	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 233, 932
HpyF3I	CTNAG	4 cut(s)	134, 331, 482, 859
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	6 cut(s)	133, 459, 679, 761, 795, 812
HspAI	GCGC	1 cut(s)	108
KpnI	GGTACC	2 cut(s)	879, 956
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	5 cut(s)	61, 469, 786, 863, 978
LguI	GCTCTTC	1 cut(s)	659
Lsp1109I	GCAGC	3 cut(s)	188, 214, 439
LweI	GCATC	3 cut(s)	256, 394, 631
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	2 cut(s)	568, 803
MalI	GATC	5 cut(s)	63, 471, 788, 865, 980
MboI	GATC	5 cut(s)	61, 469, 786, 863, 978
MboII	GAAGA	6 cut(s)	22, 676, 755, 881, 974, 1037
MflI	RGATCY	2 cut(s)	61, 863
MhlI	GDGCHC	1 cut(s)	686
MlyI	GAGTC	2 cut(s)	595, 901
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	3 cut(s)	183, 497, 777
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	435, 840
MvaI	CCWGG	2 cut(s)	435, 840
MwoI	GCNNNNNNNGC	3 cut(s)	224, 233, 932
NcoI	CCATGG	1 cut(s)	808
NdeI	CATATG	1 cut(s)	853
NdeII	GATC	5 cut(s)	61, 469, 786, 863, 978
NlaIII	CATG	6 cut(s)	133, 459, 679, 761, 795, 812
NlaIV	GGNNCC	5 cut(s)	708, 865, 877, 901, 954
NmuCI	GTSAC	2 cut(s)	568, 803
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	2 cut(s)	679, 795
PaeI	GCATGC	1 cut(s)	795
PciSI	GCTCTTC	1 cut(s)	659
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	4 cut(s)	119, 394, 692, 848
PflMI	CCANNNNNTGG	1 cut(s)	716
PfoI	TCCNGGA	1 cut(s)	838
PkrI	GCNGC	4 cut(s)	203, 229, 454, 934
PleI	GAGTC	2 cut(s)	594, 901
PpsI	GAGTC	2 cut(s)	594, 901
Ppu21I	YACGTR	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	433, 838
PspEI	GGTNACC	1 cut(s)	803
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	2 cut(s)	433, 838
PspN4I	GGNNCC	5 cut(s)	708, 865, 877, 901, 954
PspPI	GGNCC	2 cut(s)	812, 899
PstI	CTGCAG	2 cut(s)	244, 961
PsuI	RGATCY	2 cut(s)	61, 863
RsaI	GTAC	2 cut(s)	877, 954
RsaNI	GTAC	2 cut(s)	876, 953
RseI	CAYNNNNRTG	3 cut(s)	183, 497, 777
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	4 cut(s)	202, 228, 453, 933
Sau3AI	GATC	5 cut(s)	61, 469, 786, 863, 978
Sau96I	GGNCC	2 cut(s)	812, 899
SchI	GAGTC	2 cut(s)	595, 901
ScrFI	CCNGG	2 cut(s)	435, 840
SduI	GDGCHC	1 cut(s)	686
SfaNI	GCATC	3 cut(s)	256, 394, 631
SfcI	CTRYAG	2 cut(s)	240, 957
SinI	GGWCC	1 cut(s)	812
SmiMI	CAYNNNNRTG	3 cut(s)	183, 497, 777
SmlI	CTYRAG	2 cut(s)	551, 909
SmoI	CTYRAG	2 cut(s)	551, 909
SphI	GCATGC	1 cut(s)	795
SsiI	CCGC	2 cut(s)	26, 932
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	433, 838
StyI	CCWWGG	1 cut(s)	808
TaaI	ACNGT	6 cut(s)	41, 74, 467, 628, 688, 824
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	4 cut(s)	316, 973, 981, 1013
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	4 cut(s)	119, 394, 692, 848
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	5 cut(s)	472, 499, 708, 827, 933
TseFI	GTSAC	2 cut(s)	568, 803
TseI	GCWGC	3 cut(s)	201, 227, 452
Tsp45I	GTSAC	2 cut(s)	568, 803
TspDTI	ATGAA	2 cut(s)	718, 746
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	5 cut(s)	472, 499, 708, 827, 933
Van91I	CCANNNNNTGG	1 cut(s)	716
VneI	GTGCAC	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	812
XceI	RCATGY	2 cut(s)	679, 795
XmiI	GTMKAC	1 cut(s)	623
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.