Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009140

Physical Location & Seq

Genomic Coordinates Forward (+)

2047228 .. 2050205

Gene Structure 2978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03140.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGATAATAAGAAGAAGGTGGCGGTTCCGTTGGTCTGCCACGGTCATTCGCGTCCGGTGGTCGATCTGTTTTACAGTCCGGTTACTCCTGATGGGTTCTTTCTCATCAGTGCCAGTAAGGATTCGAGTCCCATGCTGAGAAATGGAGAGACTGGAGATTGGGTTGGAACATTTGAAGGGCATAAAGGCGCAGTGTGGAGTTGCTGCTTGGATACCAACGCCCTGCGTGCAGCAACTGCTTCTGCAGATTTCTCTGCGAAAGTTTGGGATGCATTAACAGGAGATGTTCTACACTCATTTGAACACAAGCACATTGTTCGAGCCTGTGCTTTTGCAGAGGACACACACCTTTTGCTTACTGGAGGAGTAGAGAAAGTTATTCGTATATATGATTTGAATCGTCCAGATGCTCCTCCAAGAGAAGTGGATAAATCTCCTGGTTCAGTCAGAACTGCTGCATGGCTCCACAGTGACCAGACCATACTAAGTTCTTGTACTGATATGGGAGGTGTCAGATTATGGGATGTAAGAACTGGTAAAATAGTTCAAACGCTTGAAACCAAATCATCTGTGACCAGTTCTGAAGTGAGTCAAGATGGTCGTTATATCACTACTGCTGATGGGTCTACTGTGAAGTTTTGGGATGCAAATTACTTTGGGTTGGTGAAGAGCTACAACATGCCATGCACAGTAGAATCAGCTTCGCTGGAACCAAAGTTCGGGAACAAGTTCATTGCCGGGGGAGAAGACATGTGGGTTCATGTACTTGATTTCCATACTGGTGAAGAGATCGCATGCAACAAGGGTCACCACGGTCCAGTTCACTGTTTGCGATTCTCGCCAGGAGGGGAATCATACGCCTCAGGATCTGAAGATGGCACCATTAGAATATGGCAGACCGGGCCCTTGACTCCAGATGAAGCTGAGGCTAATGGGTCAGTTGGAAAGGTGAAGGTACCCGCAGAAGAGGTTTCTCACAAGATCGAGGGGTTCCACATCACAGAAGAGGGAAAAGCGAAAGAGAAGGAAGAGGCAGCGGTGAACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0017015 GO:0023051 GO:0023057 GO:0030512 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:1903844 GO:1903845

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

350

Amino Acids

37.92

Weight (kDa)

5.52

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15470 AT1G52730 AT1G52730 AT1G52730 AT3G15610
fragaria_vesca	FvH4_1g03990
malus_domestica	MD02G1038200.v1.1 MD15G1178400.v1.1
prunus_persica	Prupe.7G237000_v2.0.a1 Prupe.7G237000_v2.0.a1
pyrus_communis	pycom02g03140 pycom15g16030
rosa_chinensis	RchiOBHm_Chr2g0089471
rosa_laevigata	RLG00000016033
rosa_multiflora	Rmu_sc0000197.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151900
rosa_rugosa	Rorug02G0001100
rosa_samantha	Rh2AG046300 Rh2BG044900 Rh2CG046700 Rh2DG046300
rosa_wichuraiana	Rw2G003630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	955
AccB1I	GGYRCC	2 cut(s)	878, 955
AccI	GTMKAC	1 cut(s)	626
AccII	CGCG	1 cut(s)	52
AciI	CCGC	3 cut(s)	23, 960, 1037
AclWI	GGATC	1 cut(s)	874
AcuI	CTGAAG	2 cut(s)	603, 891
AfaI	GTAC	3 cut(s)	496, 765, 957
AfiI	CCNNNNNNNGG	1 cut(s)	719
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	5 cut(s)	176, 302, 397, 548, 557
AjnI	CCWGG	2 cut(s)	436, 841
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	3 cut(s)	672, 701, 923
AluI	AGCT	3 cut(s)	672, 701, 923
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	874
AlwNI	CAGNNNCTG	2 cut(s)	236, 869
AoxI	GGCC	1 cut(s)	902
ApaI	GGGCCC	1 cut(s)	906
ApeKI	GCWGC	4 cut(s)	204, 230, 455, 1034
Asp700I	GAANNNNTTC	1 cut(s)	728
Asp718I	GGTACC	1 cut(s)	955
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	815, 902, 903
AsuC2I	CCSGG	2 cut(s)	739, 901
AsuHPI	GGTGA	4 cut(s)	676, 794, 800, 961
AvaII	GGWCC	1 cut(s)	815
AxyI	CCTNAGG	1 cut(s)	862
BaeGI	GKGCMC	1 cut(s)	906
BanI	GGYRCC	2 cut(s)	878, 955
BanII	GRGCYC	1 cut(s)	906
BbsI	GAAGAC	1 cut(s)	753
BbvCI	CCTCAGC	1 cut(s)	924
BbvI	GCAGC	4 cut(s)	191, 242, 442, 1046
BccI	CCATC	4 cut(s)	86, 590, 614, 869
BcgI	CGANNNNNNTGC	4 cut(s)	115, 149, 299, 333
BciT130I	CCWGG	2 cut(s)	438, 843
BciVI	GTATCC	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	739, 901
BcoDI	GTCTC	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	4 cut(s)	205, 231, 456, 1035
BlsI	GCNGC	4 cut(s)	206, 232, 457, 1036
Bme1390I	CCNGG	4 cut(s)	438, 739, 843, 901
Bme18I	GGWCC	1 cut(s)	815
BmgT120I	GGNCC	3 cut(s)	815, 902, 903
BmiI	GGNNCC	7 cut(s)	27, 464, 711, 880, 904, 957, 992
BmrFI	CCNGG	4 cut(s)	438, 739, 843, 901
BmsI	GCATC	3 cut(s)	259, 397, 634
BpiI	GAAGAC	1 cut(s)	753
BpmI	CTGGAG	3 cut(s)	174, 381, 897
Bpu10I	CCTNAGC	1 cut(s)	924
BpuMI	CCSGG	2 cut(s)	739, 901
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	40, 738, 811
BsaWI	WCCGGW	2 cut(s)	55, 79
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	7 cut(s)	114, 157, 364, 538, 576, 784, 818
Bse21I	CCTNAGG	1 cut(s)	862
Bse3DI	GCAATG	1 cut(s)	732
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	2 cut(s)	438, 843
BseDI	CCNNGG	3 cut(s)	40, 738, 811
BseGI	GGATG	3 cut(s)	274, 529, 649
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	3 cut(s)	128, 876, 915
BseNI	ACTGG	7 cut(s)	114, 157, 364, 538, 576, 784, 818
BseRI	GAGGAG	2 cut(s)	378, 402
BseSI	GKGCMC	1 cut(s)	906
BseXI	GCAGC	4 cut(s)	191, 242, 442, 1046
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	904
BshNI	GGYRCC	2 cut(s)	878, 955
BsiSI	CCGG	4 cut(s)	56, 80, 738, 900
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	904
Bsp120I	GGGCCC	1 cut(s)	902
Bsp1286I	GDGCHC	1 cut(s)	906
Bsp143I	GATC	4 cut(s)	64, 789, 866, 981
BspACI	CCGC	3 cut(s)	23, 960, 1037
BspANI	GGCC	1 cut(s)	904
BspCNI	CTCAG	3 cut(s)	129, 875, 916
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	7 cut(s)	27, 464, 711, 880, 904, 957, 992
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	874
BspQI	GCTCTTC	1 cut(s)	662
BspT107I	GGYRCC	2 cut(s)	878, 955
BsrDI	GCAATG	1 cut(s)	732
BsrI	ACTGG	7 cut(s)	114, 157, 364, 538, 576, 784, 818
BssECI	CCNNGG	3 cut(s)	40, 738, 811
BssMI	GATC	4 cut(s)	64, 789, 866, 981
Bst2UI	CCWGG	2 cut(s)	438, 843
Bst4CI	ACNGT	7 cut(s)	44, 77, 470, 631, 691, 815, 827
Bst6I	CTCTTC	5 cut(s)	662, 780, 960, 999, 1023
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	228, 796
BstDEI	CTNAG	4 cut(s)	137, 485, 862, 924
BstDSI	CCRYGG	2 cut(s)	40, 811
BstEII	GGTNACC	1 cut(s)	806
BstF5I	GGATG	3 cut(s)	274, 529, 649
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	4 cut(s)	67, 792, 869, 984
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	4 cut(s)	64, 789, 866, 981
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 236, 838, 901
BstNI	CCWGG	2 cut(s)	438, 843
BstNSI	RCATGY	3 cut(s)	682, 754, 798
BstPI	GGTNACC	1 cut(s)	806
BstSCI	CCNGG	4 cut(s)	436, 737, 841, 899
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	906
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	4 cut(s)	191, 242, 442, 1046
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	1 cut(s)	866
BstYI	RGATCY	1 cut(s)	866
Bsu36I	CCTNAGG	1 cut(s)	862
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	904
BtgI	CCRYGG	2 cut(s)	40, 811
BtsCI	GGATG	3 cut(s)	274, 529, 649
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	4 cut(s)	115, 198, 475, 823
Cac8I	GCNNGC	2 cut(s)	228, 796
CaiI	CAGNNNCTG	2 cut(s)	236, 869
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	815, 902, 903
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	3 cut(s)	495, 764, 956
CspCI	CAANNNNNGTGG	2 cut(s)	405, 440
CviAII	CATG	7 cut(s)	133, 459, 679, 684, 751, 761, 795
CviJI	RGCY	7 cut(s)	323, 463, 672, 701, 904, 923, 929
CviKI_1	RGCY	7 cut(s)	323, 463, 672, 701, 904, 923, 929
CviQI	GTAC	3 cut(s)	495, 764, 956
DdeI	CTNAG	4 cut(s)	137, 485, 862, 924
DpnI	GATC	4 cut(s)	66, 791, 868, 983
DpnII	GATC	4 cut(s)	64, 789, 866, 981
Eam1104I	CTCTTC	5 cut(s)	662, 780, 960, 999, 1023
EarI	CTCTTC	5 cut(s)	662, 780, 960, 999, 1023
Eco24I	GRGCYC	1 cut(s)	906
Eco47I	GGWCC	1 cut(s)	815
Eco57I	CTGAAG	2 cut(s)	603, 891
Eco81I	CCTNAGG	1 cut(s)	862
Eco91I	GGTNACC	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	903
EcoO65I	GGTNACC	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	436, 841
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	906
FaeI	CATG	7 cut(s)	136, 462, 682, 687, 754, 764, 798
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	7 cut(s)	132, 458, 678, 683, 750, 760, 794
FauI	CCCGC	1 cut(s)	967
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	4 cut(s)	205, 231, 456, 1035
FokI	GGATG	3 cut(s)	281, 536, 656
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	4 cut(s)	205, 231, 456, 1035
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	205, 231, 456, 1035
GsuI	CTGGAG	3 cut(s)	174, 381, 897
HaeIII	GGCC	1 cut(s)	904
HapII	CCGG	4 cut(s)	56, 80, 738, 900
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	7 cut(s)	136, 462, 682, 687, 754, 764, 798
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	8 cut(s)	122, 127, 397, 589, 695, 834, 851, 910
HpaII	CCGG	4 cut(s)	56, 80, 738, 900
HphI	GGTGA	4 cut(s)	676, 794, 800, 961
Hpy166II	GTNNAC	3 cut(s)	627, 823, 1042
Hpy188I	TCNGA	4 cut(s)	449, 515, 583, 871
Hpy188III	TCNNGA	6 cut(s)	89, 404, 593, 721, 864, 914
Hpy8I	GTNNAC	3 cut(s)	627, 823, 1042
HpyAV	CCTTC	4 cut(s)	10, 170, 946, 1018
HpyCH4III	ACNGT	7 cut(s)	44, 77, 470, 631, 691, 815, 827
HpyCH4V	TGCA	8 cut(s)	230, 245, 272, 335, 458, 647, 687, 798
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 236, 838, 901
HpyF3I	CTNAG	4 cut(s)	137, 485, 862, 924
Hsp92II	CATG	7 cut(s)	136, 462, 682, 687, 754, 764, 798
HspAI	GCGC	1 cut(s)	189
KpnI	GGTACC	1 cut(s)	959
Kzo9I	GATC	4 cut(s)	64, 789, 866, 981
LguI	GCTCTTC	1 cut(s)	662
LmnI	GCTCC	2 cut(s)	415, 468
Lsp1109I	GCAGC	4 cut(s)	191, 242, 442, 1046
LweI	GCATC	3 cut(s)	259, 397, 634
MaeIII	GTNAC	4 cut(s)	82, 470, 571, 806
MalI	GATC	4 cut(s)	66, 791, 868, 983
MboI	GATC	4 cut(s)	64, 789, 866, 981
MboII	GAAGA	8 cut(s)	25, 679, 758, 797, 884, 977, 1016, 1040
MflI	RGATCY	1 cut(s)	866
MhlI	GDGCHC	1 cut(s)	906
MluCI	AATT	1 cut(s)	649
MlyI	GAGTC	3 cut(s)	136, 598, 904
MmeI	TCCRAC	2 cut(s)	145, 922
Mph1103I	ATGCAT	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	728
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	780
MspA1I	CMGCKG	1 cut(s)	1037
MspI	CCGG	4 cut(s)	56, 80, 738, 900
MspR9I	CCNGG	4 cut(s)	438, 739, 843, 901
MvaI	CCWGG	2 cut(s)	438, 843
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	227, 236, 838, 901
NciI	CCSGG	2 cut(s)	739, 901
NdeII	GATC	4 cut(s)	64, 789, 866, 981
NlaIII	CATG	7 cut(s)	136, 462, 682, 687, 754, 764, 798
NlaIV	GGNNCC	7 cut(s)	27, 464, 711, 880, 904, 957, 992
NmuCI	GTSAC	3 cut(s)	470, 571, 806
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	3 cut(s)	682, 754, 798
PaeI	GCATGC	1 cut(s)	798
PciI	ACATGT	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	728
PfeI	GAWTC	5 cut(s)	122, 397, 695, 834, 851
PkrI	GCNGC	4 cut(s)	206, 232, 457, 1036
PleI	GAGTC	3 cut(s)	135, 597, 904
PpsI	GAGTC	3 cut(s)	135, 597, 904
PscI	ACATGT	1 cut(s)	750
Psp6I	CCWGG	2 cut(s)	436, 841
PspEI	GGTNACC	1 cut(s)	806
PspGI	CCWGG	2 cut(s)	436, 841
PspN4I	GGNNCC	7 cut(s)	27, 464, 711, 880, 904, 957, 992
PspOMI	GGGCCC	1 cut(s)	902
PspPI	GGNCC	3 cut(s)	815, 902, 903
PstI	CTGCAG	1 cut(s)	247
PstNI	CAGNNNCTG	2 cut(s)	236, 869
PsuI	RGATCY	1 cut(s)	866
RsaI	GTAC	3 cut(s)	496, 765, 957
RsaNI	GTAC	3 cut(s)	495, 764, 956
RseI	CAYNNNNRTG	1 cut(s)	780
SapI	GCTCTTC	1 cut(s)	662
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	4 cut(s)	205, 231, 456, 1035
Sau3AI	GATC	4 cut(s)	64, 789, 866, 981
Sau96I	GGNCC	3 cut(s)	815, 902, 903
SchI	GAGTC	3 cut(s)	136, 598, 904
ScrFI	CCNGG	4 cut(s)	438, 739, 843, 901
SduI	GDGCHC	1 cut(s)	906
SetI	ASST	9 cut(s)	21, 351, 511, 674, 703, 925, 951, 957, 972
SfaNI	GCATC	3 cut(s)	259, 397, 634
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	780
SphI	GCATGC	1 cut(s)	798
Sse9I	AATT	1 cut(s)	649
SsiI	CCGC	3 cut(s)	23, 960, 1037
StyD4I	CCNGG	4 cut(s)	436, 737, 841, 899
TaaI	ACNGT	7 cut(s)	44, 77, 470, 631, 691, 815, 827
TaqI	TCGA	4 cut(s)	63, 125, 319, 984
TasI	AATT	1 cut(s)	649
TatI	WGTACW	2 cut(s)	494, 763
TfiI	GAWTC	5 cut(s)	122, 397, 695, 834, 851
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	4 cut(s)	115, 198, 475, 830
TseFI	GTSAC	3 cut(s)	470, 571, 806
TseI	GCWGC	4 cut(s)	204, 230, 455, 1034
Tsp45I	GTSAC	3 cut(s)	470, 571, 806
TspDTI	ATGAA	3 cut(s)	721, 749, 933
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	4 cut(s)	115, 198, 475, 830
VpaK11BI	GGWCC	1 cut(s)	815
XceI	RCATGY	3 cut(s)	682, 754, 798
XmiI	GTMKAC	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	728
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.