Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000197.1

Orthogroup ID

OG0009140

Physical Location & Seq

Genomic Coordinates Reverse (-)

13794 .. 16392

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000197.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggagaagaagaaggtggccgtcccgctggtttgccacggccattcccgaccggttgtggatctgttttacagtccgatcactcccgatggtttcttcctcatcagtgccagtaaggattctagtcccatgctgagaaatggagagaccggagattggattggaacatttgaaggacataagggtgcagtctggagttgctgtttggatactaatgctctaagggctgccactgcttctgcagatttctctgcgaaagtttgggatgcattaacaggagatgtgctacactcgtttgaacacaagcacattgttcgagcatgtgcattctcagaggatacacaccttttacttactggaggagtagagaaagttatacgtatatatgatttgaaccgcccagatgcccctccaagagaagtggacaaatcccctggttcggttagaaccgctgcatggctccacagtgatcagaccattttaagttcttgcactgatatggggggtgtcagattatgggatgtaagaactgggaaaatagttcaaacacttgataccaagtcatctgtaactagctctgaagtcagtcaagatggtcgttacatcacaactgctgatgggtctacagtgaagttttgggatgcaaattactttgggttggtgaagagctacaacatgccttgtacagtagaatcagtttcgctggaaccaaagtttgggaacaagttcattgctggtggtgaagacatgtgggttcatgtttttgatttccatactggtgatgagattgcttgcaataagggtcaccatggtcctgtacactgcgttcgtttttcaccaggaggggagtcatatgcctctggatctgaagatggcaccatcagaatatggcagaccggtcctctgactcacgaagaaagcgaggcacaggcagcaaatggggcagtcggaaaggtgaagccacctgtggaagaggtctctcgcaagattgagggcttccaaatttctgatgaggccaagtcaaaagagaaggaagaggcccctgcagccgccgcagcagcagtgaacgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0017015 GO:0023051 GO:0023057 GO:0030512 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:1903844 GO:1903845

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

357

Amino Acids

38.67

Weight (kDa)

5.61

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15470 AT1G52730 AT1G52730 AT1G52730 AT3G15610
fragaria_vesca	FvH4_1g03990
malus_domestica	MD02G1038200.v1.1 MD15G1178400.v1.1
prunus_persica	Prupe.7G237000_v2.0.a1 Prupe.7G237000_v2.0.a1
pyrus_communis	pycom02g03140 pycom15g16030
rosa_chinensis	RchiOBHm_Chr2g0089471
rosa_laevigata	RLG00000016033
rosa_multiflora	Rmu_sc0000197.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151900
rosa_rugosa	Rorug02G0001100
rosa_samantha	Rh2AG046300 Rh2BG044900 Rh2CG046700 Rh2DG046300
rosa_wichuraiana	Rw2G003630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	875
AccB7I	CCANNNNNTGG	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	623
AciI	CCGC	5 cut(s)	26, 397, 450, 1050, 1053
AclWI	GGATC	2 cut(s)	69, 871
AcoI	YGGCCR	2 cut(s)	18, 40
AcsI	RAATTY	1 cut(s)	1002
AcuI	CTGAAG	2 cut(s)	600, 888
AfaI	GTAC	2 cut(s)	685, 819
AfiI	CCNNNNNNNGG	4 cut(s)	156, 439, 456, 716
AflIII	ACRYGT	2 cut(s)	747, 1068
AgeI	ACCGGT	2 cut(s)	52, 896
AgsI	TTSAA	4 cut(s)	173, 299, 394, 545
AjnI	CCWGG	2 cut(s)	433, 838
AjuI	GAANNNNNNNTTGG	2 cut(s)	699, 731
AluBI	AGCT	2 cut(s)	576, 669
AluI	AGCT	2 cut(s)	576, 669
Alw26I	GTCTC	2 cut(s)	140, 982
AlwI	GGATC	2 cut(s)	69, 871
AoxI	GGCC	4 cut(s)	18, 40, 1014, 1038
ApeKI	GCWGC	6 cut(s)	227, 452, 932, 1046, 1055, 1058
ApoI	RAATTY	1 cut(s)	1002
AsiGI	ACCGGT	2 cut(s)	52, 896
Asp700I	GAANNNNTTC	1 cut(s)	725
AspS9I	GGNCC	3 cut(s)	812, 899, 1039
AsuHPI	GGTGA	6 cut(s)	673, 752, 791, 797, 828, 967
AvaII	GGWCC	2 cut(s)	812, 899
BanI	GGYRCC	1 cut(s)	875
BbsI	GAAGAC	1 cut(s)	750
BbvI	GCAGC	6 cut(s)	214, 439, 944, 1058, 1067, 1070
BccI	CCATC	5 cut(s)	83, 587, 611, 866, 887
BceAI	ACGGC	2 cut(s)	5, 55
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	2 cut(s)	435, 840
BciVI	GTATCC	2 cut(s)	202, 331
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	140, 982
BfaI	CTAG	2 cut(s)	123, 573
BfmI	CTRYAG	3 cut(s)	240, 624, 1044
BfuI	GTATCC	2 cut(s)	202, 331
BisI	GCNGC	8 cut(s)	228, 453, 933, 1047, 1050, 1053, 1056, 1059
BlsI	GCNGC	8 cut(s)	229, 454, 934, 1048, 1051, 1054, 1057, 1060
Bme1390I	CCNGG	2 cut(s)	435, 840
Bme18I	GGWCC	2 cut(s)	812, 899
BmgT120I	GGNCC	3 cut(s)	812, 899, 1039
BmiI	GGNNCC	4 cut(s)	461, 708, 877, 1041
BmrFI	CCNGG	2 cut(s)	435, 840
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	256, 394, 631
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	750
BpmI	CTGGAG	2 cut(s)	214, 378
BsaAI	YACGTR	1 cut(s)	380
BsaI	GGTCTC	2 cut(s)	140, 982
BsaJI	CCNNGG	3 cut(s)	37, 433, 808
BsaWI	WCCGGW	3 cut(s)	52, 149, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 439, 456, 716
Bse118I	RCCGGY	2 cut(s)	52, 896
Bse1I	ACTGG	4 cut(s)	111, 361, 535, 781
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	2 cut(s)	435, 840
BseDI	CCNNGG	3 cut(s)	37, 433, 808
BseGI	GGATG	3 cut(s)	271, 526, 646
BseLI	CCNNNNNNNGG	4 cut(s)	156, 439, 456, 716
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	2 cut(s)	125, 345
BseNI	ACTGG	4 cut(s)	111, 361, 535, 781
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	6 cut(s)	214, 439, 944, 1058, 1067, 1070
BsgI	GTGCAG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	53
BshFI	GGCC	4 cut(s)	20, 42, 1016, 1040
BshNI	GGYRCC	1 cut(s)	875
BshTI	ACCGGT	2 cut(s)	52, 896
BsiEI	CGRYCG	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	53, 150, 897
BslFI	GGGAC	2 cut(s)	8, 111
BslI	CCNNNNNNNGG	4 cut(s)	156, 439, 456, 716
BsmAI	GTCTC	2 cut(s)	140, 982
BsmFI	GGGAC	2 cut(s)	8, 111
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	4 cut(s)	20, 42, 1016, 1040
Bso31I	GGTCTC	2 cut(s)	140, 982
Bsp1407I	TGTACA	2 cut(s)	683, 817
Bsp143I	GATC	4 cut(s)	61, 78, 469, 863
Bsp19I	CCATGG	1 cut(s)	808
BspACI	CCGC	5 cut(s)	26, 397, 450, 1050, 1053
BspANI	GGCC	4 cut(s)	20, 42, 1016, 1040
BspCNI	CTCAG	2 cut(s)	126, 344
BspLI	GGNNCC	4 cut(s)	461, 708, 877, 1041
BspMAI	CTGCAG	2 cut(s)	244, 1048
BspPI	GGATC	2 cut(s)	69, 871
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	875
BspTNI	GGTCTC	2 cut(s)	140, 982
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	2 cut(s)	52, 896
BsrGI	TGTACA	2 cut(s)	683, 817
BsrI	ACTGG	4 cut(s)	111, 361, 535, 781
BssAI	RCCGGY	2 cut(s)	52, 896
BssECI	CCNNGG	3 cut(s)	37, 433, 808
BssMI	GATC	4 cut(s)	61, 78, 469, 863
BssT1I	CCWWGG	1 cut(s)	808
Bst2UI	CCWGG	2 cut(s)	435, 840
Bst4CI	ACNGT	4 cut(s)	74, 467, 628, 688
Bst6I	CTCTTC	3 cut(s)	659, 966, 1029
BstAUI	TGTACA	2 cut(s)	683, 817
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	793
BstDEI	CTNAG	3 cut(s)	134, 221, 331
BstDSI	CCRYGG	2 cut(s)	37, 808
BstEII	GGTNACC	1 cut(s)	803
BstF5I	GGATG	3 cut(s)	271, 526, 646
BstKTI	GATC	4 cut(s)	64, 81, 472, 866
BstMAI	GTCTC	2 cut(s)	140, 982
BstMBI	GATC	4 cut(s)	61, 78, 469, 863
BstMCI	CGRYCG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	8 cut(s)	224, 233, 932, 941, 1046, 1052, 1055, 1058
BstNI	CCWGG	2 cut(s)	435, 840
BstNSI	RCATGY	3 cut(s)	324, 679, 751
BstPI	GGTNACC	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	433, 838
BstSFI	CTRYAG	3 cut(s)	240, 624, 1044
BstSNI	TACGTA	1 cut(s)	380
BstV1I	GCAGC	6 cut(s)	214, 439, 944, 1058, 1067, 1070
BstV2I	GAAGAC	1 cut(s)	750
BstX2I	RGATCY	2 cut(s)	61, 863
BstYI	RGATCY	2 cut(s)	61, 863
BsuI	GTATCC	2 cut(s)	202, 331
BsuRI	GGCC	4 cut(s)	20, 42, 1016, 1040
BtgI	CCRYGG	2 cut(s)	37, 808
BtsCI	GGATG	3 cut(s)	271, 526, 646
BtsI	GCAGTG	3 cut(s)	231, 820, 1068
BtsIMutI	CAGTG	7 cut(s)	112, 231, 472, 492, 633, 820, 1068
Cac8I	GCNNGC	1 cut(s)	793
Cfr10I	RCCGGY	2 cut(s)	52, 896
Cfr13I	GGNCC	3 cut(s)	812, 899, 1039
Csp6I	GTAC	2 cut(s)	684, 818
CspAI	ACCGGT	2 cut(s)	52, 896
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviAII	CATG	7 cut(s)	130, 321, 456, 676, 748, 758, 809
CviQI	GTAC	2 cut(s)	684, 818
DdeI	CTNAG	3 cut(s)	134, 221, 331
DpnI	GATC	4 cut(s)	63, 80, 471, 865
DpnII	GATC	4 cut(s)	61, 78, 469, 863
EaeI	YGGCCR	2 cut(s)	18, 40
Eam1104I	CTCTTC	3 cut(s)	659, 966, 1029
EarI	CTCTTC	3 cut(s)	659, 966, 1029
Eco105I	TACGTA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	808
Eco31I	GGTCTC	2 cut(s)	140, 982
Eco47I	GGWCC	2 cut(s)	812, 899
Eco57I	CTGAAG	2 cut(s)	600, 888
Eco91I	GGTNACC	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	1039
EcoO65I	GGTNACC	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	433, 838
EcoT14I	CCWWGG	1 cut(s)	808
EcoT22I	ATGCAT	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	808
FaeI	CATG	7 cut(s)	133, 324, 459, 679, 751, 761, 812
FaqI	GGGAC	2 cut(s)	8, 111
FatI	CATG	7 cut(s)	129, 320, 455, 675, 747, 757, 808
FauI	CCCGC	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	623
Fnu4HI	GCNGC	8 cut(s)	228, 453, 933, 1047, 1050, 1053, 1056, 1059
FokI	GGATG	3 cut(s)	278, 533, 653
Fsp4HI	GCNGC	8 cut(s)	228, 453, 933, 1047, 1050, 1053, 1056, 1059
FspBI	CTAG	2 cut(s)	123, 573
GluI	GCNGC	8 cut(s)	228, 453, 933, 1047, 1050, 1053, 1056, 1059
GsuI	CTGGAG	2 cut(s)	214, 378
HaeIII	GGCC	4 cut(s)	20, 42, 1016, 1040
HapII	CCGG	3 cut(s)	53, 150, 897
Hin1II	CATG	7 cut(s)	133, 324, 459, 679, 751, 761, 812
HinfI	GANTC	4 cut(s)	119, 692, 848, 907
HpaII	CCGG	3 cut(s)	53, 150, 897
HphI	GGTGA	6 cut(s)	673, 752, 791, 797, 828, 967
Hpy166II	GTNNAC	4 cut(s)	424, 624, 820, 1066
Hpy188III	TCNNGA	6 cut(s)	48, 86, 193, 590, 861, 911
Hpy8I	GTNNAC	4 cut(s)	424, 624, 820, 1066
HpyAV	CCTTC	3 cut(s)	7, 167, 1024
HpyCH4III	ACNGT	4 cut(s)	74, 467, 628, 688
HpyCH4IV	ACGT	2 cut(s)	379, 1068
HpyCH4V	TGCA	9 cut(s)	188, 242, 269, 326, 455, 492, 644, 795, 1046
HpyF10VI	GCNNNNNNNGC	8 cut(s)	224, 233, 932, 941, 1046, 1052, 1055, 1058
HpyF3I	CTNAG	3 cut(s)	134, 221, 331
HpySE526I	ACGT	2 cut(s)	379, 1068
Hsp92II	CATG	7 cut(s)	133, 324, 459, 679, 751, 761, 812
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	61, 78, 469, 863
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	1 cut(s)	465
Lsp1109I	GCAGC	6 cut(s)	214, 439, 944, 1058, 1067, 1070
LweI	GCATC	3 cut(s)	256, 394, 631
MaeI	CTAG	2 cut(s)	123, 573
MaeII	ACGT	2 cut(s)	379, 1068
MaeIII	GTNAC	3 cut(s)	568, 599, 803
MalI	GATC	4 cut(s)	63, 80, 471, 865
MboI	GATC	4 cut(s)	61, 78, 469, 863
MboII	GAAGA	9 cut(s)	19, 22, 88, 676, 755, 881, 926, 983, 1046
MflI	RGATCY	2 cut(s)	61, 863
MluCI	AATT	2 cut(s)	646, 1002
MlyI	GAGTC	2 cut(s)	857, 901
MmeI	TCCRAC	1 cut(s)	928
Mph1103I	ATGCAT	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	2 cut(s)	272, 482
MslI	CAYNNNNRTG	3 cut(s)	183, 497, 777
MspA1I	CMGCKG	2 cut(s)	28, 452
MspI	CCGG	3 cut(s)	53, 150, 897
MspR9I	CCNGG	2 cut(s)	435, 840
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	2 cut(s)	435, 840
MwoI	GCNNNNNNNGC	8 cut(s)	224, 233, 932, 941, 1046, 1052, 1055, 1058
NcoI	CCATGG	1 cut(s)	808
NdeI	CATATG	1 cut(s)	853
NdeII	GATC	4 cut(s)	61, 78, 469, 863
NlaIII	CATG	7 cut(s)	133, 324, 459, 679, 751, 761, 812
NlaIV	GGNNCC	4 cut(s)	461, 708, 877, 1041
NmuCI	GTSAC	1 cut(s)	803
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	3 cut(s)	324, 679, 751
PciI	ACATGT	1 cut(s)	747
PciSI	GCTCTTC	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	918
PctI	GAATGC	1 cut(s)	326
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	119, 692
PflMI	CCANNNNNTGG	1 cut(s)	716
PinAI	ACCGGT	2 cut(s)	52, 896
PkrI	GCNGC	8 cut(s)	229, 454, 934, 1048, 1051, 1054, 1057, 1060
PleI	GAGTC	2 cut(s)	856, 901
PpsI	GAGTC	2 cut(s)	856, 901
Ppu21I	YACGTR	1 cut(s)	380
PscI	ACATGT	1 cut(s)	747
Psp6I	CCWGG	2 cut(s)	433, 838
PspEI	GGTNACC	1 cut(s)	803
PspGI	CCWGG	2 cut(s)	433, 838
PspN4I	GGNNCC	4 cut(s)	461, 708, 877, 1041
PspPI	GGNCC	3 cut(s)	812, 899, 1039
PsrI	GAACNNNNNNTAC	2 cut(s)	810, 842
PstI	CTGCAG	2 cut(s)	244, 1048
PsuI	RGATCY	2 cut(s)	61, 863
RsaI	GTAC	2 cut(s)	685, 819
RsaNI	GTAC	2 cut(s)	684, 818
RseI	CAYNNNNRTG	3 cut(s)	183, 497, 777
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	2 cut(s)	272, 482
SatI	GCNGC	8 cut(s)	228, 453, 933, 1047, 1050, 1053, 1056, 1059
Sau3AI	GATC	4 cut(s)	61, 78, 469, 863
Sau96I	GGNCC	3 cut(s)	812, 899, 1039
SchI	GAGTC	2 cut(s)	857, 901
ScrFI	CCNGG	2 cut(s)	435, 840
SetI	ASST	9 cut(s)	18, 348, 382, 578, 671, 957, 967, 978, 1071
SfaNI	GCATC	3 cut(s)	256, 394, 631
SfcI	CTRYAG	3 cut(s)	240, 624, 1044
SinI	GGWCC	2 cut(s)	812, 899
SmiMI	CAYNNNNRTG	3 cut(s)	183, 497, 777
SnaBI	TACGTA	1 cut(s)	380
Sse9I	AATT	2 cut(s)	646, 1002
SsiI	CCGC	5 cut(s)	26, 397, 450, 1050, 1053
SspMI	CTAG	2 cut(s)	123, 573
StyD4I	CCNGG	2 cut(s)	433, 838
StyI	CCWWGG	1 cut(s)	808
TaaI	ACNGT	4 cut(s)	74, 467, 628, 688
TaiI	ACGT	2 cut(s)	382, 1071
TaqI	TCGA	1 cut(s)	316
TasI	AATT	2 cut(s)	646, 1002
TatI	WGTACW	2 cut(s)	683, 817
TauI	GCSGC	2 cut(s)	1052, 1055
TfiI	GAWTC	2 cut(s)	119, 692
Tru1I	TTAA	2 cut(s)	272, 482
Tru9I	TTAA	2 cut(s)	272, 482
TscAI	CASTG	7 cut(s)	112, 238, 472, 499, 633, 827, 1068
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	6 cut(s)	227, 452, 932, 1046, 1055, 1058
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	2 cut(s)	718, 746
TspRI	CASTG	7 cut(s)	112, 238, 472, 499, 633, 827, 1068
Van91I	CCANNNNNTGG	1 cut(s)	716
VpaK11BI	GGWCC	2 cut(s)	812, 899
XapI	RAATTY	1 cut(s)	1002
XceI	RCATGY	3 cut(s)	324, 679, 751
XmiI	GTMKAC	1 cut(s)	623
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	2 cut(s)	123, 573
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.