AT3G16200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015989
Physical Location & Seq
Reverse (-)
5491398 .. 5493681
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16200.1

Sequence Viewer

Length: 1371 bp
ATGGAGAGAGGAATGAACAATGGGCAATCACTCTGGCACTCTCAGTCACCGAAAACTCCAACGACGATGCTAGATCGGGCTCTTTCCTCTCGCCGTCCTCACTCCGACGCCGATCTCTCTGCTTCCGGCGAATCCGGAACCGACGAATCTAAAACCAAACGCCCACACATCTACCTCCTTGCTTCCAATTTCCTTTCTCGGATCGGTCATCAGTGGTGGCCTTGTCTCATTCTCGCTCTCCTCTTCCTCGTCCTTCTCTTCCTCATCTCCGTTGCTTTCCATTCTCACAGCTTTGTTTGCATCTCCCGCTTCGATCCCGCTGCTCGGATCGGGTTTTTCGGTCTTGATGGCCTCGAATCGGATTTTGGTGCCCTAGGTGTTCCTTGGTGCAGATCGAAACATGGAAAAGAAGTTGAGTGGACATCCAAAGATTTACTCAAGGGTCTAGAAGAGTTTGTGCCGATATATGAAACACGACCGATAAAGAACAATATGTATGGAATGGGTTTTGATCATAGCTTTGGGTTATGGTTCATGGCCCGTTGGCTAAAGCCAGATATGATGATTGAGAGTGGTGCTTTTAAGGGACATTCTACTTGGGTTCTGCGGCAGGCGATGCCAGATACACCTATGATTTCACTTACTCCTAGGCACCCTGAGAAGTATCTGAGAAAGGGACCTGCTTATGTAGATGGAAACTGCACATACTTTGCAGGCAAAGATTTTGTTGATTTTGGAAGTGTTGATTGGAAGAATGTGTTGAGAAAACATGGTATAACAGATCTCAGCCGTGTAATTGTCTTTTTCGATGACCATCAGAATGAACTCAAAAGGCTAAAGCAGGCACTGAAAGCTGGTTTCCGACATCTCATTTTCGAGGATAACTACGATACAGGAACCGGGGATCACTATTCGCTGAGACAGATATGTGATCAGTCACATATAAGAGGAGGCGGACACAGCTGTTTCAAAGACAGCGATGAAGCTAGGATGAGATCAAAGAGGAAGAAGTTCTGGGAAAAAGCAGTTGATACAGAGGAACTGTGCGGACCAGGGGAAACATGGTGGGGAGTTAAAGGAGAAATGAGAGATGATTTCAACCACACTAACACGCCGATCTCATACAATCAGCATTTTCAAAACAGTCGCTACGTTGAATCAATTCTTGACGTCTATTGGGAGCTACCTCCGGTCGCAGGACCTTCATTAACCCATCAGTCGCGGTATGACCCTGCTCGAGCGACTCCACCAATCGTAGCAGATGGCAAGCACCGGTTGTTCCAACGAATCGGTTTAGGTCGTCTGGATAAGTCAGTGTTCAATGGGTATACTCAAATGGTATACCTTGAGATATCCAAGCCCGGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

52.16

Weight (kDa)

8.52

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16200
fragaria_vesca FvH4_6g31940
malus_domestica MD09G1207900.v1.1 MD17G1189000.v1.1
prunus_persica Prupe.3G064100_v2.0.a1
pyrus_communis pycom09g12410 pycom17g19730
rosa_chinensis RchiOBHm_Chr2g0139361
rosa_laevigata RLG00000019808
rosa_multiflora Rmu_sc0004390.1_g000004
rosa_roxburghii Rroxscaffold_2G00105440
rosa_rugosa Rorug02G0357700
rosa_samantha Rh2DG426500
rosa_wichuraiana Rw2G032980 Rw2G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1173
Acc36I ACCTGC 1 cut(s) 688
AccB1I GGYRCC 2 cut(s) 368, 651
AccI GTMKAC 2 cut(s) 1328, 1341
AccII CGCG 1 cut(s) 1222
AccIII TCCGGA 1 cut(s) 134
AciI CCGC 6 cut(s) 307, 318, 607, 954, 1047, 1222
AclWI GGATC 4 cut(s) 209, 308, 335, 912
AcyI GRCGYC 2 cut(s) 108, 1170
AfiI CCNNNNNNNGG 4 cut(s) 324, 358, 1196, 1362
AgeI ACCGGT 1 cut(s) 1272
AgsI TTSAA 5 cut(s) 970, 1099, 1139, 1157, 1321
AjnI CCWGG 1 cut(s) 1051
AjuI GAANNNNNNNTTGG 4 cut(s) 348, 380, 730, 762
AluBI AGCT 6 cut(s) 291, 519, 854, 963, 986, 1183
AluI AGCT 6 cut(s) 291, 519, 854, 963, 986, 1183
Alw26I GTCTC 2 cut(s) 230, 913
AlwI GGATC 4 cut(s) 209, 308, 335, 912
AlwNI CAGNNNCTG 1 cut(s) 847
Ama87I CYCGRG 2 cut(s) 1236, 1361
Aor13HI TCCGGA 1 cut(s) 134
AoxI GGCC 3 cut(s) 218, 349, 537
ApeKI GCWGC 1 cut(s) 320
AsiGI ACCGGT 1 cut(s) 1272
Asp700I GAANNNNTTC 2 cut(s) 1010, 1161
AspA2I CCTAGG 2 cut(s) 373, 647
AspS9I GGNCC 4 cut(s) 538, 677, 1049, 1199
AsuC2I CCSGG 3 cut(s) 901, 1362, 1363
AsuHPI GGTGA 1 cut(s) 39
AvaI CYCGRG 2 cut(s) 1236, 1361
AvaII GGWCC 3 cut(s) 677, 1049, 1199
AvrII CCTAGG 2 cut(s) 373, 647
BaeGI GKGCMC 1 cut(s) 373
BanI GGYRCC 2 cut(s) 368, 651
BanII GRGCYC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 307
BccI CCATC 5 cut(s) 341, 686, 822, 1221, 1256
BceAI ACGGC 2 cut(s) 78, 774
BcgI CGANNNNNNTGC 4 cut(s) 101, 135, 302, 336
BciT130I CCWGG 1 cut(s) 1053
BclI TGATCA 2 cut(s) 511, 931
BcnI CCSGG 3 cut(s) 901, 1362, 1363
BcoDI GTCTC 2 cut(s) 230, 913
BfaI CTAG 5 cut(s) 71, 374, 446, 648, 987
BfuAI ACCTGC 1 cut(s) 688
BglII AGATCT 1 cut(s) 781
BisI GCNGC 2 cut(s) 321, 608
BlnI CCTAGG 2 cut(s) 373, 647
BlsI GCNGC 2 cut(s) 322, 609
Bme1390I CCNGG 4 cut(s) 901, 1053, 1362, 1363
Bme18I GGWCC 3 cut(s) 677, 1049, 1199
BmeT110I CYCGRG 2 cut(s) 1236, 1361
BmgT120I GGNCC 4 cut(s) 538, 677, 1049, 1199
BmiI GGNNCC 5 cut(s) 139, 370, 653, 678, 898
BmrFI CCNGG 4 cut(s) 901, 1053, 1362, 1363
BmsI GCATC 3 cut(s) 57, 309, 606
BpuEI CTTGAG 2 cut(s) 422, 1367
BpuMI CCSGG 3 cut(s) 901, 1362, 1363
BsaBI GATNNNNATC 1 cut(s) 813
BsaHI GRCGYC 2 cut(s) 108, 1170
BsaJI CCNNGG 6 cut(s) 373, 383, 647, 900, 1052, 1361
BsaWI WCCGGW 3 cut(s) 134, 1189, 1272
Bsc4I CCNNNNNNNGG 4 cut(s) 324, 358, 1196, 1362
Bse118I RCCGGY 1 cut(s) 1272
Bse8I GATNNNNATC 1 cut(s) 813
BseAI TCCGGA 1 cut(s) 134
BseBI CCWGG 1 cut(s) 1053
BseDI CCNNGG 6 cut(s) 373, 383, 647, 900, 1052, 1361
BseGI GGATG 2 cut(s) 422, 996
BseJI GATNNNNATC 1 cut(s) 813
BseLI CCNNNNNNNGG 4 cut(s) 324, 358, 1196, 1362
BseMII CTCAG 5 cut(s) 56, 648, 659, 799, 908
BseRI GAGGAG 2 cut(s) 230, 963
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 1 cut(s) 307
BsgI GTGCAG 2 cut(s) 409, 685
Bsh1236I CGCG 1 cut(s) 1222
Bsh1285I CGRYCG 2 cut(s) 479, 1194
BshFI GGCC 3 cut(s) 220, 351, 539
BshNI GGYRCC 2 cut(s) 368, 651
BshTI ACCGGT 1 cut(s) 1272
BsiEI CGRYCG 2 cut(s) 479, 1194
BsiHKCI CYCGRG 2 cut(s) 1236, 1361
BsiSI CCGG 6 cut(s) 126, 135, 900, 1190, 1273, 1362
BslFI GGGAC 2 cut(s) 600, 690
BslI CCNNNNNNNGG 4 cut(s) 324, 358, 1196, 1362
BsmAI GTCTC 2 cut(s) 230, 913
BsmFI GGGAC 2 cut(s) 600, 690
BsnI GGCC 3 cut(s) 220, 351, 539
BsoBI CYCGRG 2 cut(s) 1236, 1361
Bsp1286I GDGCHC 2 cut(s) 82, 373
Bsp13I TCCGGA 1 cut(s) 134
BspACI CCGC 6 cut(s) 307, 318, 607, 954, 1047, 1222
BspANI GGCC 3 cut(s) 220, 351, 539
BspCNI CTCAG 5 cut(s) 55, 649, 660, 798, 909
BspEI TCCGGA 1 cut(s) 134
BspFNI CGCG 1 cut(s) 1222
BspLI GGNNCC 5 cut(s) 139, 370, 653, 678, 898
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 4 cut(s) 209, 308, 335, 912
BspT107I GGYRCC 2 cut(s) 368, 651
BsrFI RCCGGY 1 cut(s) 1272
BssAI RCCGGY 1 cut(s) 1272
BssECI CCNNGG 6 cut(s) 373, 383, 647, 900, 1052, 1361
BssNAI GTATAC 2 cut(s) 1329, 1342
BssNI GRCGYC 2 cut(s) 108, 1170
BssT1I CCWWGG 3 cut(s) 373, 383, 647
Bst1107I GTATAC 2 cut(s) 1329, 1342
Bst2UI CCWGG 1 cut(s) 1053
Bst4CI ACNGT 2 cut(s) 1044, 1145
Bst6I CTCTTC 3 cut(s) 248, 263, 444
BstACI GRCGYC 2 cut(s) 108, 1170
BstAPI GCANNNNNTGC 1 cut(s) 616
BstC8I GCNNGC 4 cut(s) 612, 715, 843, 1268
BstDEI CTNAG 5 cut(s) 42, 657, 668, 785, 917
BstF5I GGATG 2 cut(s) 422, 996
BstFNI CGCG 1 cut(s) 1222
BstMAI GTCTC 2 cut(s) 230, 913
BstMCI CGRYCG 2 cut(s) 479, 1194
BstMWI GCNNNNNNNGC 5 cut(s) 297, 306, 616, 851, 960
BstNI CCWGG 1 cut(s) 1053
BstSCI CCNGG 4 cut(s) 899, 1051, 1360, 1361
BstSLI GKGCMC 1 cut(s) 373
BstUI CGCG 1 cut(s) 1222
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
BstZ17I GTATAC 2 cut(s) 1329, 1342
BsuRI GGCC 3 cut(s) 220, 351, 539
BtgZI GCGATG 2 cut(s) 629, 993
BtsCI GGATG 2 cut(s) 422, 996
BtsIMutI CAGTG 3 cut(s) 218, 845, 1320
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 4 cut(s) 612, 715, 843, 1268
CaiI CAGNNNCTG 1 cut(s) 847
Cfr10I RCCGGY 1 cut(s) 1272
Cfr13I GGNCC 4 cut(s) 538, 677, 1049, 1199
Cfr9I CCCGGG 1 cut(s) 1361
CseI GACGC 1 cut(s) 116
CspAI ACCGGT 1 cut(s) 1272
CviAII CATG 4 cut(s) 401, 535, 770, 1062
DdeI CTNAG 5 cut(s) 42, 657, 668, 785, 917
Eam1104I CTCTTC 3 cut(s) 248, 263, 444
EarI CTCTTC 3 cut(s) 248, 263, 444
EciI GGCGGA 1 cut(s) 969
Eco130I CCWWGG 3 cut(s) 373, 383, 647
Eco24I GRGCYC 1 cut(s) 82
Eco32I GATATC 1 cut(s) 1353
Eco47I GGWCC 3 cut(s) 677, 1049, 1199
Eco88I CYCGRG 2 cut(s) 1236, 1361
EcoO109I RGGNCCY 2 cut(s) 677, 1199
EcoRII CCWGG 1 cut(s) 1051
EcoRV GATATC 1 cut(s) 1353
EcoT14I CCWWGG 3 cut(s) 373, 383, 647
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 3 cut(s) 373, 383, 647
FaeI CATG 4 cut(s) 404, 538, 773, 1065
FaqI GGGAC 2 cut(s) 600, 690
FatI CATG 4 cut(s) 400, 534, 769, 1061
FauI CCCGC 2 cut(s) 314, 325
FbaI TGATCA 2 cut(s) 511, 931
FblI GTMKAC 2 cut(s) 1328, 1341
Fnu4HI GCNGC 2 cut(s) 321, 608
FokI GGATG 2 cut(s) 409, 1003
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 321, 608
FspBI CTAG 5 cut(s) 71, 374, 446, 648, 987
GluI GCNGC 2 cut(s) 321, 608
HaeIII GGCC 3 cut(s) 220, 351, 539
HapII CCGG 6 cut(s) 126, 135, 900, 1190, 1273, 1362
HgaI GACGC 1 cut(s) 116
Hin1I GRCGYC 2 cut(s) 108, 1170
Hin1II CATG 4 cut(s) 404, 538, 773, 1065
HinfI GANTC 6 cut(s) 131, 146, 356, 1157, 1243, 1287
HpaII CCGG 6 cut(s) 126, 135, 900, 1190, 1273, 1362
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 3 cut(s) 420, 1329, 1342
Hpy188I TCNGA 7 cut(s) 106, 201, 327, 361, 669, 819, 863
Hpy188III TCNNGA 5 cut(s) 135, 344, 446, 1166, 1304
Hpy8I GTNNAC 3 cut(s) 420, 1329, 1342
Hpy99I CGWCG 3 cut(s) 67, 110, 146
HpyAV CCTTC 2 cut(s) 263, 1212
HpyCH4III ACNGT 2 cut(s) 1044, 1145
HpyCH4IV ACGT 2 cut(s) 1152, 1170
HpyCH4V TGCA 4 cut(s) 300, 390, 702, 713
HpyF10VI GCNNNNNNNGC 5 cut(s) 297, 306, 616, 851, 960
HpyF3I CTNAG 5 cut(s) 42, 657, 668, 785, 917
HpySE526I ACGT 2 cut(s) 1152, 1170
Hsp92I GRCGYC 2 cut(s) 108, 1170
Hsp92II CATG 4 cut(s) 404, 538, 773, 1065
Kpn2I TCCGGA 1 cut(s) 134
Ksp22I TGATCA 2 cut(s) 511, 931
LmnI GCTCC 1 cut(s) 1180
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 3 cut(s) 57, 309, 606
MaeI CTAG 5 cut(s) 71, 374, 446, 648, 987
MaeII ACGT 2 cut(s) 1152, 1170
MaeIII GTNAC 2 cut(s) 45, 936
MboII GAAGA 5 cut(s) 235, 250, 461, 763, 1018
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 2 cut(s) 82, 373
MluCI AATT 3 cut(s) 187, 795, 1161
MlyI GAGTC 1 cut(s) 1237
MmeI TCCRAC 4 cut(s) 83, 129, 886, 1306
MroI TCCGGA 1 cut(s) 134
MroXI GAANNNNTTC 2 cut(s) 1010, 1161
MseI TTAA 3 cut(s) 582, 1074, 1208
MslI CAYNNNNRTG 1 cut(s) 819
MspA1I CMGCKG 2 cut(s) 320, 963
MspI CCGG 6 cut(s) 126, 135, 900, 1190, 1273, 1362
MspR9I CCNGG 4 cut(s) 901, 1053, 1362, 1363
MvaI CCWGG 1 cut(s) 1053
MvnI CGCG 1 cut(s) 1222
MwoI GCNNNNNNNGC 5 cut(s) 297, 306, 616, 851, 960
NciI CCSGG 3 cut(s) 901, 1362, 1363
NlaIII CATG 4 cut(s) 404, 538, 773, 1065
NlaIV GGNNCC 5 cut(s) 139, 370, 653, 678, 898
NmuCI GTSAC 2 cut(s) 45, 936
PaeR7I CTCGAG 1 cut(s) 1236
PdmI GAANNNNTTC 2 cut(s) 1010, 1161
PfeI GAWTC 5 cut(s) 131, 146, 356, 1157, 1287
PinAI ACCGGT 1 cut(s) 1272
PkrI GCNGC 2 cut(s) 322, 609
PleI GAGTC 1 cut(s) 1237
PpsI GAGTC 1 cut(s) 1237
PpuMI RGGWCCY 2 cut(s) 677, 1199
Psp5II RGGWCCY 2 cut(s) 677, 1199
Psp6I CCWGG 1 cut(s) 1051
PspGI CCWGG 1 cut(s) 1051
PspN4I GGNNCC 5 cut(s) 139, 370, 653, 678, 898
PspPI GGNCC 4 cut(s) 538, 677, 1049, 1199
PspPPI RGGWCCY 2 cut(s) 677, 1199
PspXI VCTCGAGB 1 cut(s) 1236
PstNI CAGNNNCTG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 963
RseI CAYNNNNRTG 1 cut(s) 819
SaqAI TTAA 3 cut(s) 582, 1074, 1208
SatI GCNGC 2 cut(s) 321, 608
Sau96I GGNCC 4 cut(s) 538, 677, 1049, 1199
SchI GAGTC 1 cut(s) 1237
ScrFI CCNGG 4 cut(s) 901, 1053, 1362, 1363
SduI GDGCHC 2 cut(s) 82, 373
SfaNI GCATC 3 cut(s) 57, 309, 606
Sfr274I CTCGAG 1 cut(s) 1236
SinI GGWCC 3 cut(s) 677, 1049, 1199
SlaI CTCGAG 1 cut(s) 1236
SmaI CCCGGG 1 cut(s) 1363
SmiMI CAYNNNNRTG 1 cut(s) 819
SmlI CTYRAG 3 cut(s) 437, 1236, 1346
SmoI CTYRAG 3 cut(s) 437, 1236, 1346
Sse9I AATT 3 cut(s) 187, 795, 1161
SsiI CCGC 6 cut(s) 307, 318, 607, 954, 1047, 1222
SspMI CTAG 5 cut(s) 71, 374, 446, 648, 987
StyD4I CCNGG 4 cut(s) 899, 1051, 1360, 1361
StyI CCWWGG 3 cut(s) 373, 383, 647
TaaI ACNGT 2 cut(s) 1044, 1145
TaiI ACGT 2 cut(s) 1155, 1173
TaqI TCGA 6 cut(s) 312, 354, 395, 807, 876, 1237
TaqII GACCGA 3 cut(s) 194, 329, 493
TasI AATT 3 cut(s) 187, 795, 1161
TauI GCSGC 1 cut(s) 610
TfiI GAWTC 5 cut(s) 131, 146, 356, 1157, 1287
Tru1I TTAA 3 cut(s) 582, 1074, 1208
Tru9I TTAA 3 cut(s) 582, 1074, 1208
TscAI CASTG 3 cut(s) 218, 852, 1320
TseFI GTSAC 2 cut(s) 45, 936
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 2 cut(s) 45, 936
TspDTI ATGAA 6 cut(s) 29, 483, 523, 837, 996, 1194
TspGWI ACGGA 1 cut(s) 259
TspMI CCCGGG 1 cut(s) 1361
TspRI CASTG 3 cut(s) 218, 852, 1320
VpaK11BI GGWCC 3 cut(s) 677, 1049, 1199
XbaI TCTAGA 1 cut(s) 445
XcmI CCANNNNNNNNNTGG 1 cut(s) 1059
XhoI CTCGAG 1 cut(s) 1236
XmaI CCCGGG 1 cut(s) 1361
XmaJI CCTAGG 2 cut(s) 373, 647
XmiI GTMKAC 2 cut(s) 1328, 1341
XmnI GAANNNNTTC 2 cut(s) 1010, 1161
XspI CTAG 5 cut(s) 71, 374, 446, 648, 987
ZraI GACGTC 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.