RLG00000019808

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015989
Physical Location & Seq
Reverse (-)
56951279 .. 56953625
2347 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019808

Sequence Viewer

Length: 1305 bp
ATGCTCGAGCGCGTCCTCTCCTCCCGCCGCTACGCCTCCCACCCCGACGCCGAAAACGACGACAGCGACGTCGCCGCTGACGATTCCAAAACCAAAAAACACTTGCCCATCTCCTTCTTCACCACCCGAATCACCAACTACTTGACCCGAACCGGACCCGTCTGGCCCTGCCTCCTCCTCCTCGTCTTCGTCCTCTTCCTCATCTTCTCCCTCATCTACAACTCCCGCAGATTCGTCTGCGTCTCGCCTTACGACCCCGCCTCCCGCACCGGCTTCTTCGGCTTCGATGGCCTCGAATCCGATTTCGGATCCCTCGGCGTGCCCTGGTGCAGACCGAAACACGGAAAAACAGTGGATTGGACATCCAAGGATTTGATCAAGGCATTGGAAGTGTTTGTACCAATCTATGAAACCCGACCGATCAAAAACAACATGTATGGGATGGGCTTTGACCACAGCTTTGGGCTCTGGTTCATTGCCCAATGGCTGAAGCCAGATTTGATGATTGAGAGCGGTGCTTTCAAGGGGCATTCTACTTGGGTTTTGCGACAAGCAATGCCAGACAAGCCAATTGTGTCCCTCTCACCACGGCATCCTGAGAAGTATCTGAAGAAGGGGCCTGCATATGTTGATGCAAACTGTACTTACTTTGCTGGAAAAGACTTTGTTGATTTTGGAAGTGTTGATTGGGAAAAGGTGTTGAAGAAACATGGGATTACTGATCTCAGTCGTGTTCTTATCTTTTTCGATGACCATCAGAATGAATTGAAAAGAATAAAGCAGGCTCTGAAGGCTGGTTTCCGCCATATGGTTTTTGAGGACAATTATGATACTGGAACTGGTGATCATTATTCCTTAAGGCAGATATGTGATCAATCCTATATTAGAGGAGGTGGTCACAGTTGCTTTAAGGACAGTGATGAAGCTCGGATTAGGTCAAAAAGGAAGCATTTCTGGGAGAAAGCAGTTGATATAGATGAACTTTGTGGGCCAGGTGAAGCATGGTGGGGTGTTAGAGGGTACGTGCGGGATAACTTTAACCACAGTCATAAGTTGATACCATATGAAGAACATTTTCAGAACAGCCGGTTTGTGGAATCAATTCTTGATGTTTACTGGGAGCTGCCACCAGTGGCAGGACCATCGCTCACACATCAGACTAGATATGATCCTGCTCGTGCACCACCTCCCATTGTTGAAGATGGTCGCTATGGCTTATTCCAACGGCTTGGTCTAACCAGATTCGATACTTCTGTATTTAATGGATACACTCAGATGGTTTACATTCAGATATCTAAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

435

Amino Acids

50.09

Weight (kDa)

8.05

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16200
fragaria_vesca FvH4_6g31940
malus_domestica MD09G1207900.v1.1 MD17G1189000.v1.1
prunus_persica Prupe.3G064100_v2.0.a1
pyrus_communis pycom09g12410 pycom17g19730
rosa_chinensis RchiOBHm_Chr2g0139361
rosa_laevigata RLG00000019808
rosa_multiflora Rmu_sc0004390.1_g000004
rosa_roxburghii Rroxscaffold_2G00105440
rosa_rugosa Rorug02G0357700
rosa_samantha Rh2DG426500
rosa_wichuraiana Rw2G032980 Rw2G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AatII GACGTC 1 cut(s) 72
AccBSI CCGCTC 1 cut(s) 513
AccII CGCG 1 cut(s) 12
AciI CCGC 9 cut(s) 25, 28, 75, 226, 258, 265, 513, 802, 1027
AclWI GGATC 3 cut(s) 303, 316, 1163
AcuI CTGAAG 3 cut(s) 509, 629, 809
AcyI GRCGYC 2 cut(s) 48, 69
AfaI GTAC 3 cut(s) 399, 643, 1022
AfiI CCNNNNNNNGG 4 cut(s) 341, 808, 1093, 1136
AflII CTTAAG 1 cut(s) 856
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 4 cut(s) 523, 703, 769, 1199
AjnI CCWGG 2 cut(s) 323, 991
AjuI GAANNNNNNNTTGG 2 cut(s) 670, 702
AluBI AGCT 3 cut(s) 459, 926, 1123
AluI AGCT 3 cut(s) 459, 926, 1123
Alw21I GWGCWC 1 cut(s) 1183
Alw26I GTCTC 1 cut(s) 247
Alw44I GTGCAC 1 cut(s) 1179
AlwI GGATC 3 cut(s) 303, 316, 1163
AlwNI CAGNNNCTG 1 cut(s) 787
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 4 cut(s) 164, 289, 617, 989
ApaLI GTGCAC 1 cut(s) 1179
ApeKI GCWGC 1 cut(s) 1123
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
Asp700I GAANNNNTTC 3 cut(s) 950, 1074, 1101
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 5 cut(s) 155, 165, 617, 989, 1139
AsuHPI GGTGA 5 cut(s) 112, 124, 576, 854, 1007
AvaI CYCGRG 1 cut(s) 5
AvaII GGWCC 2 cut(s) 155, 1139
BaeGI GKGCMC 2 cut(s) 324, 1183
BaeI ACNNNNGTAYC 2 cut(s) 1239, 1272
BamHI GGATCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 468
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
BauI CACGAG 1 cut(s) 1176
BbsI GAAGAC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 1183
BbvI GCAGC 1 cut(s) 1110
BccI CCATC 7 cut(s) 116, 281, 436, 762, 1150, 1196, 1270
BceAI ACGGC 2 cut(s) 605, 1241
BcgI CGANNNNNNTGC 2 cut(s) 1125, 1159
BciT130I CCWGG 2 cut(s) 325, 993
BciVI GTATCC 1 cut(s) 1259
BclI TGATCA 3 cut(s) 375, 844, 871
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 1 cut(s) 1161
BfrI CTTAAG 1 cut(s) 856
BfuI GTATCC 1 cut(s) 1259
BisI GCNGC 3 cut(s) 28, 75, 1124
BlsI GCNGC 3 cut(s) 29, 76, 1125
Bme1390I CCNGG 2 cut(s) 325, 993
Bme18I GGWCC 2 cut(s) 155, 1139
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 5 cut(s) 155, 165, 617, 989, 1139
BmiI GGNNCC 3 cut(s) 157, 310, 618
BmrFI CCNGG 2 cut(s) 325, 993
BmrI ACTGGG 1 cut(s) 1126
BmsI GCATC 2 cut(s) 601, 622
BmuI ACTGGG 1 cut(s) 1126
BpiI GAAGAC 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 1024
BsaBI GATNNNNATC 1 cut(s) 753
BsaHI GRCGYC 2 cut(s) 48, 69
BsaJI CCNNGG 4 cut(s) 313, 323, 366, 587
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 808, 1093, 1136
Bse118I RCCGGY 2 cut(s) 269, 1086
Bse1I ACTGG 4 cut(s) 838, 844, 1121, 1130
Bse3DI GCAATG 2 cut(s) 474, 561
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 2 cut(s) 325, 993
BseDI CCNNGG 4 cut(s) 313, 323, 366, 587
BseGI GGATG 3 cut(s) 362, 447, 592
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 4 cut(s) 341, 808, 1093, 1136
BseMI GCAATG 2 cut(s) 474, 561
BseMII CTCAG 3 cut(s) 588, 739, 1286
BseNI ACTGG 4 cut(s) 838, 844, 1121, 1130
BseRI GAGGAG 5 cut(s) 10, 164, 167, 170, 903
BseSI GKGCMC 2 cut(s) 324, 1183
BseXI GCAGC 1 cut(s) 1110
BsgI GTGCAG 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 419
BshFI GGCC 4 cut(s) 166, 291, 619, 991
BsiEI CGRYCG 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 1183
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 3 cut(s) 153, 270, 1087
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 4 cut(s) 341, 808, 1093, 1136
BsmAI GTCTC 1 cut(s) 247
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 562
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 4 cut(s) 166, 291, 619, 991
BsoBI CYCGRG 1 cut(s) 5
Bsp1286I GDGCHC 3 cut(s) 324, 468, 1183
Bsp143I GATC 7 cut(s) 308, 375, 420, 721, 844, 871, 1168
BspACI CCGC 9 cut(s) 25, 28, 75, 226, 258, 265, 513, 802, 1027
BspANI GGCC 4 cut(s) 166, 291, 619, 991
BspCNI CTCAG 3 cut(s) 589, 738, 1285
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 3 cut(s) 157, 310, 618
BspPI GGATC 3 cut(s) 303, 316, 1163
BspTI CTTAAG 1 cut(s) 856
BsrBI CCGCTC 1 cut(s) 513
BsrDI GCAATG 2 cut(s) 474, 561
BsrFI RCCGGY 2 cut(s) 269, 1086
BsrI ACTGG 4 cut(s) 838, 844, 1121, 1130
BssAI RCCGGY 2 cut(s) 269, 1086
BssECI CCNNGG 4 cut(s) 313, 323, 366, 587
BssMI GATC 7 cut(s) 308, 375, 420, 721, 844, 871, 1168
BssNI GRCGYC 2 cut(s) 48, 69
BssSI CACGAG 1 cut(s) 1176
BssT1I CCWWGG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 1176
Bst2UI CCWGG 2 cut(s) 325, 993
Bst4CI ACNGT 6 cut(s) 352, 641, 902, 917, 1046, 1302
Bst6I CTCTTC 1 cut(s) 200
BstACI GRCGYC 2 cut(s) 48, 69
BstAFI CTTAAG 1 cut(s) 856
BstBAI YACGTR 1 cut(s) 1024
BstC8I GCNNGC 3 cut(s) 320, 621, 783
BstDEI CTNAG 3 cut(s) 597, 725, 1272
BstDSI CCRYGG 1 cut(s) 587
BstF5I GGATG 3 cut(s) 362, 447, 592
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 7 cut(s) 311, 378, 423, 724, 847, 874, 1171
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 7 cut(s) 308, 375, 420, 721, 844, 871, 1168
BstMCI CGRYCG 1 cut(s) 419
BstMWI GCNNNNNNNGC 4 cut(s) 279, 288, 565, 791
BstNI CCWGG 2 cut(s) 325, 993
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 2 cut(s) 323, 991
BstSLI GKGCMC 2 cut(s) 324, 1183
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 1110
BstV2I GAAGAC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 308
BstXI CCANNNNNNTGG 2 cut(s) 461, 1229
BstYI RGATCY 1 cut(s) 308
BsuI GTATCC 1 cut(s) 1259
BsuRI GGCC 4 cut(s) 166, 291, 619, 991
BtgI CCRYGG 1 cut(s) 587
BtgZI GCGATG 1 cut(s) 1128
BtsCI GGATG 3 cut(s) 362, 447, 592
BtsIMutI CAGTG 3 cut(s) 357, 922, 1137
Cac8I GCNNGC 3 cut(s) 320, 621, 783
CaiI CAGNNNCTG 1 cut(s) 787
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 2 cut(s) 269, 1086
Cfr13I GGNCC 5 cut(s) 155, 165, 617, 989, 1139
CseI GACGC 2 cut(s) 56, 229
Csp6I GTAC 3 cut(s) 398, 642, 1021
CviAII CATG 3 cut(s) 433, 710, 1002
CviQI GTAC 3 cut(s) 398, 642, 1021
DdeI CTNAG 3 cut(s) 597, 725, 1272
DpnI GATC 7 cut(s) 310, 377, 422, 723, 846, 873, 1170
DpnII GATC 7 cut(s) 308, 375, 420, 721, 844, 871, 1168
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 1 cut(s) 791
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 468
Eco32I GATATC 1 cut(s) 1293
Eco47I GGWCC 2 cut(s) 155, 1139
Eco57I CTGAAG 3 cut(s) 509, 629, 809
Eco88I CYCGRG 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 617
EcoRII CCWGG 2 cut(s) 323, 991
EcoRV GATATC 1 cut(s) 1293
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 3 cut(s) 436, 713, 1005
FaqI GGGAC 1 cut(s) 562
FatI CATG 3 cut(s) 432, 709, 1001
FauI CCCGC 5 cut(s) 32, 233, 265, 272, 1020
FauNDI CATATG 3 cut(s) 625, 807, 1063
FbaI TGATCA 3 cut(s) 375, 844, 871
Fnu4HI GCNGC 3 cut(s) 28, 75, 1124
FokI GGATG 3 cut(s) 349, 454, 579
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 3 cut(s) 28, 75, 1124
FspBI CTAG 1 cut(s) 1161
GlaI GCGC 1 cut(s) 11
GluI GCNGC 3 cut(s) 28, 75, 1124
HaeIII GGCC 4 cut(s) 166, 291, 619, 991
HapII CCGG 3 cut(s) 153, 270, 1087
HgaI GACGC 2 cut(s) 56, 229
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 2 cut(s) 48, 69
Hin1II CATG 3 cut(s) 436, 713, 1005
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 6 cut(s) 83, 129, 231, 296, 1097, 1242
HpaII CCGG 3 cut(s) 153, 270, 1087
HphI GGTGA 5 cut(s) 112, 124, 576, 854, 1007
Hpy166II GTNNAC 3 cut(s) 1114, 1181, 1282
Hpy188III TCNNGA 2 cut(s) 596, 1106
Hpy8I GTNNAC 3 cut(s) 1114, 1181, 1282
Hpy99I CGWCG 4 cut(s) 50, 62, 71, 74
HpyAV CCTTC 3 cut(s) 124, 607, 784
HpyCH4III ACNGT 6 cut(s) 352, 641, 902, 917, 1046, 1302
HpyCH4IV ACGT 2 cut(s) 69, 1023
HpyCH4V TGCA 4 cut(s) 330, 623, 635, 1181
HpyF10VI GCNNNNNNNGC 4 cut(s) 279, 288, 565, 791
HpyF3I CTNAG 3 cut(s) 597, 725, 1272
HpySE526I ACGT 2 cut(s) 69, 1023
Hsp92I GRCGYC 2 cut(s) 48, 69
Hsp92II CATG 3 cut(s) 436, 713, 1005
HspAI GCGC 1 cut(s) 10
Ksp22I TGATCA 3 cut(s) 375, 844, 871
Kzo9I GATC 7 cut(s) 308, 375, 420, 721, 844, 871, 1168
LmnI GCTCC 1 cut(s) 1120
Lsp1109I GCAGC 1 cut(s) 1110
LweI GCATC 2 cut(s) 601, 622
MaeI CTAG 1 cut(s) 1161
MaeII ACGT 2 cut(s) 69, 1023
MaeIII GTNAC 1 cut(s) 896
MalI GATC 7 cut(s) 310, 377, 422, 723, 846, 873, 1170
MbiI CCGCTC 1 cut(s) 513
MboI GATC 7 cut(s) 308, 375, 420, 721, 844, 871, 1168
MboII GAAGA 9 cut(s) 109, 178, 187, 196, 268, 622, 715, 1079, 1211
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 3 cut(s) 324, 468, 1183
MluCI AATT 4 cut(s) 570, 764, 823, 1101
MmeI TCCRAC 1 cut(s) 1246
MroXI GAANNNNTTC 3 cut(s) 950, 1074, 1101
MseI TTAA 4 cut(s) 857, 909, 1038, 1260
MslI CAYNNNNRTG 2 cut(s) 759, 1274
MspA1I CMGCKG 1 cut(s) 77
MspCI CTTAAG 1 cut(s) 856
MspI CCGG 3 cut(s) 153, 270, 1087
MspR9I CCNGG 2 cut(s) 325, 993
MunI CAATTG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 2 cut(s) 325, 993
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 4 cut(s) 279, 288, 565, 791
NdeI CATATG 3 cut(s) 625, 807, 1063
NdeII GATC 7 cut(s) 308, 375, 420, 721, 844, 871, 1168
NlaIII CATG 3 cut(s) 436, 713, 1005
NlaIV GGNNCC 3 cut(s) 157, 310, 618
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 896
NspI RCATGY 1 cut(s) 436
PaeR7I CTCGAG 1 cut(s) 5
PciI ACATGT 1 cut(s) 432
PcsI WCGNNNNNNNCGW 5 cut(s) 54, 63, 66, 78, 291
PctI GAATGC 1 cut(s) 529
PdmI GAANNNNTTC 3 cut(s) 950, 1074, 1101
PfeI GAWTC 6 cut(s) 83, 129, 231, 296, 1097, 1242
PkrI GCNGC 3 cut(s) 29, 76, 1125
Ppu21I YACGTR 1 cut(s) 1024
PscI ACATGT 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 323, 991
PspGI CCWGG 2 cut(s) 323, 991
PspN4I GGNNCC 3 cut(s) 157, 310, 618
PspPI GGNCC 5 cut(s) 155, 165, 617, 989, 1139
PspXI VCTCGAGB 1 cut(s) 5
PstNI CAGNNNCTG 1 cut(s) 787
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 3 cut(s) 399, 643, 1022
RsaNI GTAC 3 cut(s) 398, 642, 1021
RseI CAYNNNNRTG 2 cut(s) 759, 1274
SaqAI TTAA 4 cut(s) 857, 909, 1038, 1260
SatI GCNGC 3 cut(s) 28, 75, 1124
Sau3AI GATC 7 cut(s) 308, 375, 420, 721, 844, 871, 1168
Sau96I GGNCC 5 cut(s) 155, 165, 617, 989, 1139
ScrFI CCNGG 2 cut(s) 325, 993
SduI GDGCHC 3 cut(s) 324, 468, 1183
SfaNI GCATC 2 cut(s) 601, 622
Sfr274I CTCGAG 1 cut(s) 5
SinI GGWCC 2 cut(s) 155, 1139
SlaI CTCGAG 1 cut(s) 5
SmiMI CAYNNNNRTG 2 cut(s) 759, 1274
SmlI CTYRAG 2 cut(s) 5, 856
SmoI CTYRAG 2 cut(s) 5, 856
Sse9I AATT 4 cut(s) 570, 764, 823, 1101
SsiI CCGC 9 cut(s) 25, 28, 75, 226, 258, 265, 513, 802, 1027
SspMI CTAG 1 cut(s) 1161
StyD4I CCNGG 2 cut(s) 323, 991
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 6 cut(s) 352, 641, 902, 917, 1046, 1302
TaiI ACGT 2 cut(s) 72, 1026
TaqI TCGA 5 cut(s) 6, 285, 294, 747, 1245
TaqII GACCGA 2 cut(s) 349, 433
TasI AATT 4 cut(s) 570, 764, 823, 1101
TatI WGTACW 1 cut(s) 641
TauI GCSGC 2 cut(s) 30, 77
TfiI GAWTC 6 cut(s) 83, 129, 231, 296, 1097, 1242
Tru1I TTAA 4 cut(s) 857, 909, 1038, 1260
Tru9I TTAA 4 cut(s) 857, 909, 1038, 1260
TscAI CASTG 3 cut(s) 357, 922, 1137
TseFI GTSAC 1 cut(s) 896
TseI GCWGC 1 cut(s) 1123
Tsp45I GTSAC 1 cut(s) 896
TspDTI ATGAA 6 cut(s) 423, 463, 777, 936, 993, 1080
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 3 cut(s) 357, 922, 1137
Vha464I CTTAAG 1 cut(s) 856
VneI GTGCAC 1 cut(s) 1179
VpaK11BI GGWCC 2 cut(s) 155, 1139
XceI RCATGY 1 cut(s) 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 999
XhoI CTCGAG 1 cut(s) 5
XmnI GAANNNNTTC 3 cut(s) 950, 1074, 1101
XspI CTAG 1 cut(s) 1161
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.