FvH4_6g31940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015989
Physical Location & Seq
Reverse (-)
25039915 .. 25042629
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31940.t4

Sequence Viewer

Length: 873 bp
ATGTATGGGATGGGATTTGACCACAGCTTTGGGCTCTGGTTCATAACCCAGTGGCTGAAGCCGGATTTGATGATTGAGAGTGGTGCTTTCAAGGGGCATTCTACTTGGGTTTTGCGACAAGCAATGCCGGACAAGCCTATCGTGTCCCTCTCACCACGGCATCCTGAAAAGTATCTGAAGAAGGGGCCTGCATATGTTGATGCAAACTGTACTTATTTTGCGGGGAAGGATTTTGTTGATTTTGGAAGTGTTGATTGGGAAAAAGTGATGAAGAAACATGGGATTACTGATCTTGGCCGTGTTCTTATCTTTTTTGACGACCATCAGAATGAATTGAAAAGAATAAAGCAGGCGCTGAAGGCTGGTTTCCGCCATATGGTTTTTGAGGACAATTATGATACTGGAACTGGGGATCATTATTCCTTAAGACAGATATGTGATCAATCCTATATTAGAGGAGGTGGTCACAGTTGCTTTAAAGACAGTGATGAAGCTCGGATTAGGTCAAAAAGGAAGCATTTCTGGGAGAAAGCAGTTGATATAGAAGAACTTTGTGGGCCAGATGAAGCATGGTGGGGTGTGAGAGGGTACGTGCGGGATAACTTTAACCACAGTAATAAGTTGATACCGTATGCAGAACATTTTCAGAACAGCCGGTTTATGGAATCAATTCTTGATGTATACTGGGAGCTGCCACCAGTGGCAGGACCGTCCCTCACACATCAGACTAGATATGATCCTGCTCGTGCACCGCCTCCCATTGTTGAAGATGGTCGGTATGGCTTATTCCAACGGCTTGGTTTAACCAGATTCGATACTTCTGTATTTAATGGATACACTCAGATGGTTTACATTCAGATATCTAAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.69

Weight (kDa)

7.2

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16200
fragaria_vesca FvH4_6g31940
malus_domestica MD09G1207900.v1.1 MD17G1189000.v1.1
prunus_persica Prupe.3G064100_v2.0.a1
pyrus_communis pycom09g12410 pycom17g19730
rosa_chinensis RchiOBHm_Chr2g0139361
rosa_laevigata RLG00000019808
rosa_multiflora Rmu_sc0004390.1_g000004
rosa_roxburghii Rroxscaffold_2G00105440
rosa_rugosa Rorug02G0357700
rosa_samantha Rh2DG426500
rosa_wichuraiana Rw2G032980 Rw2G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 681
AciI CCGC 4 cut(s) 221, 370, 595, 752
AclWI GGATC 2 cut(s) 420, 731
AcoI YGGCCR 1 cut(s) 295
AcuI CTGAAG 3 cut(s) 77, 197, 377
AfaI GTAC 2 cut(s) 211, 590
AfiI CCNNNNNNNGG 3 cut(s) 376, 661, 704
AflII CTTAAG 1 cut(s) 424
AgsI TTSAA 3 cut(s) 91, 337, 767
AjuI GAANNNNNNNTTGG 2 cut(s) 238, 270
AluBI AGCT 3 cut(s) 27, 494, 691
AluI AGCT 3 cut(s) 27, 494, 691
Alw21I GWGCWC 1 cut(s) 751
Alw44I GTGCAC 1 cut(s) 747
AlwI GGATC 2 cut(s) 420, 731
AlwNI CAGNNNCTG 2 cut(s) 55, 355
AoxI GGCC 3 cut(s) 185, 295, 557
ApaLI GTGCAC 1 cut(s) 747
ApeKI GCWGC 1 cut(s) 691
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
Asp700I GAANNNNTTC 3 cut(s) 518, 642, 669
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 3 cut(s) 185, 557, 707
AsuHPI GGTGA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 751
BaeI ACNNNNGTAYC 2 cut(s) 807, 840
BanII GRGCYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 744
Bbv12I GWGCWC 1 cut(s) 751
BbvI GCAGC 1 cut(s) 678
BccI CCATC 4 cut(s) 4, 330, 764, 838
BceAI ACGGC 3 cut(s) 173, 282, 809
BciVI GTATCC 1 cut(s) 827
BclI TGATCA 1 cut(s) 439
BfaI CTAG 1 cut(s) 729
BfoI RGCGCY 1 cut(s) 356
BfrI CTTAAG 1 cut(s) 424
BfuI GTATCC 1 cut(s) 827
BisI GCNGC 1 cut(s) 692
BlsI GCNGC 1 cut(s) 693
Bme18I GGWCC 1 cut(s) 707
BmgT120I GGNCC 3 cut(s) 185, 557, 707
BmiI GGNNCC 1 cut(s) 186
BmrI ACTGGG 3 cut(s) 43, 417, 694
BmsI GCATC 2 cut(s) 169, 190
BmuI ACTGGG 3 cut(s) 43, 417, 694
BsaAI YACGTR 1 cut(s) 592
BsaJI CCNNGG 1 cut(s) 155
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 661, 704
Bse118I RCCGGY 1 cut(s) 654
Bse1I ACTGG 5 cut(s) 49, 406, 412, 689, 698
Bse3DI GCAATG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 2 cut(s) 15, 160
BseLI CCNNNNNNNGG 3 cut(s) 376, 661, 704
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 854
BseNI ACTGG 5 cut(s) 49, 406, 412, 689, 698
BseRI GAGGAG 1 cut(s) 471
BseSI GKGCMC 1 cut(s) 751
BseXI GCAGC 1 cut(s) 678
BshFI GGCC 3 cut(s) 187, 297, 559
BsiHKAI GWGCWC 1 cut(s) 751
BsiSI CCGG 3 cut(s) 62, 128, 655
BslFI GGGAC 2 cut(s) 130, 697
BslI CCNNNNNNNGG 3 cut(s) 376, 661, 704
BsmFI GGGAC 2 cut(s) 130, 697
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 3 cut(s) 187, 297, 559
Bsp1286I GDGCHC 2 cut(s) 36, 751
Bsp143I GATC 4 cut(s) 289, 412, 439, 736
BspACI CCGC 4 cut(s) 221, 370, 595, 752
BspANI GGCC 3 cut(s) 187, 297, 559
BspCNI CTCAG 1 cut(s) 853
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 2 cut(s) 420, 731
BspTI CTTAAG 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 654
BsrI ACTGG 5 cut(s) 49, 406, 412, 689, 698
BssAI RCCGGY 1 cut(s) 654
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 4 cut(s) 289, 412, 439, 736
BssNAI GTATAC 1 cut(s) 682
BssSI CACGAG 1 cut(s) 744
Bst1107I GTATAC 1 cut(s) 682
Bst2BI CACGAG 1 cut(s) 744
Bst4CI ACNGT 7 cut(s) 209, 470, 485, 614, 630, 711, 870
BstAFI CTTAAG 1 cut(s) 424
BstBAI YACGTR 1 cut(s) 592
BstC8I GCNNGC 2 cut(s) 189, 351
BstDEI CTNAG 1 cut(s) 840
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 15, 160
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 4 cut(s) 292, 415, 442, 739
BstMBI GATC 4 cut(s) 289, 412, 439, 736
BstMWI GCNNNNNNNGC 2 cut(s) 133, 359
BstSLI GKGCMC 1 cut(s) 751
BstV1I GCAGC 1 cut(s) 678
BstXI CCANNNNNNTGG 2 cut(s) 29, 797
BstZ17I GTATAC 1 cut(s) 682
BsuI GTATCC 1 cut(s) 827
BsuRI GGCC 3 cut(s) 187, 297, 559
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 2 cut(s) 15, 160
BtsIMutI CAGTG 3 cut(s) 56, 490, 705
Cac8I GCNNGC 2 cut(s) 189, 351
CaiI CAGNNNCTG 2 cut(s) 55, 355
CfoI GCGC 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 654
Cfr13I GGNCC 3 cut(s) 185, 557, 707
Csp6I GTAC 2 cut(s) 210, 589
CviAII CATG 2 cut(s) 278, 570
CviQI GTAC 2 cut(s) 210, 589
DdeI CTNAG 1 cut(s) 840
DpnI GATC 4 cut(s) 291, 414, 441, 738
DpnII GATC 4 cut(s) 289, 412, 439, 736
DraI TTTAAA 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 295
EciI GGCGGA 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 36
Eco32I GATATC 1 cut(s) 861
Eco47I GGWCC 1 cut(s) 707
Eco57I CTGAAG 3 cut(s) 77, 197, 377
EcoO109I RGGNCCY 1 cut(s) 185
EcoRV GATATC 1 cut(s) 861
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 2 cut(s) 281, 573
FaqI GGGAC 2 cut(s) 130, 697
FatI CATG 2 cut(s) 277, 569
FauI CCCGC 2 cut(s) 214, 588
FauNDI CATATG 2 cut(s) 193, 375
FbaI TGATCA 1 cut(s) 439
FblI GTMKAC 1 cut(s) 681
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 2 cut(s) 22, 147
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 1 cut(s) 729
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 692
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 3 cut(s) 187, 297, 559
HapII CCGG 3 cut(s) 62, 128, 655
HhaI GCGC 1 cut(s) 355
Hin1II CATG 2 cut(s) 281, 573
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 2 cut(s) 665, 810
HpaII CCGG 3 cut(s) 62, 128, 655
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 3 cut(s) 682, 749, 850
Hpy188I TCNGA 7 cut(s) 177, 327, 498, 648, 726, 843, 858
Hpy188III TCNNGA 2 cut(s) 164, 674
Hpy8I GTNNAC 3 cut(s) 682, 749, 850
HpyAV CCTTC 3 cut(s) 175, 220, 352
HpyCH4III ACNGT 7 cut(s) 209, 470, 485, 614, 630, 711, 870
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 4 cut(s) 191, 203, 635, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 359
HpyF3I CTNAG 1 cut(s) 840
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 2 cut(s) 281, 573
HspAI GCGC 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 4 cut(s) 289, 412, 439, 736
LmnI GCTCC 1 cut(s) 688
Lsp1109I GCAGC 1 cut(s) 678
LweI GCATC 2 cut(s) 169, 190
MaeI CTAG 1 cut(s) 729
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 1 cut(s) 464
MalI GATC 4 cut(s) 291, 414, 441, 738
MboI GATC 4 cut(s) 289, 412, 439, 736
MboII GAAGA 4 cut(s) 190, 283, 557, 779
MhlI GDGCHC 2 cut(s) 36, 751
MluCI AATT 3 cut(s) 332, 391, 669
MmeI TCCRAC 1 cut(s) 814
MnlI CCTC 7 cut(s) 158, 379, 449, 452, 578, 725, 765
MroXI GAANNNNTTC 3 cut(s) 518, 642, 669
MseI TTAA 5 cut(s) 425, 477, 606, 803, 828
MslI CAYNNNNRTG 2 cut(s) 327, 842
MspCI CTTAAG 1 cut(s) 424
MspI CCGG 3 cut(s) 62, 128, 655
Mva1269I GAATGC 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 133, 359
NdeI CATATG 2 cut(s) 193, 375
NdeII GATC 4 cut(s) 289, 412, 439, 736
NlaIII CATG 2 cut(s) 281, 573
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 464
PctI GAATGC 1 cut(s) 97
PdmI GAANNNNTTC 3 cut(s) 518, 642, 669
PfeI GAWTC 2 cut(s) 665, 810
PkrI GCNGC 1 cut(s) 693
Ppu21I YACGTR 1 cut(s) 592
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 3 cut(s) 185, 557, 707
PstNI CAGNNNCTG 2 cut(s) 55, 355
RsaI GTAC 2 cut(s) 211, 590
RsaNI GTAC 2 cut(s) 210, 589
RseI CAYNNNNRTG 2 cut(s) 327, 842
SaqAI TTAA 5 cut(s) 425, 477, 606, 803, 828
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 4 cut(s) 289, 412, 439, 736
Sau96I GGNCC 3 cut(s) 185, 557, 707
SduI GDGCHC 2 cut(s) 36, 751
SetI ASST 6 cut(s) 29, 463, 496, 506, 594, 693
SfaNI GCATC 2 cut(s) 169, 190
SinI GGWCC 1 cut(s) 707
SmiMI CAYNNNNRTG 2 cut(s) 327, 842
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 3 cut(s) 332, 391, 669
SsiI CCGC 4 cut(s) 221, 370, 595, 752
SspMI CTAG 1 cut(s) 729
TaaI ACNGT 7 cut(s) 209, 470, 485, 614, 630, 711, 870
TaiI ACGT 1 cut(s) 594
TaqI TCGA 1 cut(s) 813
TasI AATT 3 cut(s) 332, 391, 669
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 2 cut(s) 665, 810
Tru1I TTAA 5 cut(s) 425, 477, 606, 803, 828
Tru9I TTAA 5 cut(s) 425, 477, 606, 803, 828
TscAI CASTG 3 cut(s) 56, 490, 705
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 1 cut(s) 691
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 5 cut(s) 31, 284, 345, 504, 579
TspRI CASTG 3 cut(s) 56, 490, 705
Vha464I CTTAAG 1 cut(s) 424
VneI GTGCAC 1 cut(s) 747
VpaK11BI GGWCC 1 cut(s) 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 567
XmiI GTMKAC 1 cut(s) 681
XmnI GAANNNNTTC 3 cut(s) 518, 642, 669
XspI CTAG 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.