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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16200 |
| fragaria_vesca | FvH4_6g31940 |
| malus_domestica | MD09G1207900.v1.1 MD17G1189000.v1.1 |
| prunus_persica | Prupe.3G064100_v2.0.a1 |
| pyrus_communis | pycom09g12410 pycom17g19730 |
| rosa_chinensis | RchiOBHm_Chr2g0139361 |
| rosa_laevigata | RLG00000019808 |
| rosa_multiflora | Rmu_sc0004390.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00105440 |
| rosa_rugosa | Rorug02G0357700 |
| rosa_samantha | Rh2DG426500 |
| rosa_wichuraiana | Rw2G032980 Rw2G033240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 102 |
| AccBSI | CCGCTC | 1 cut(s) | 543 |
| AccII | CGCG | 1 cut(s) | 51 |
| AciI | CCGC | 9 cut(s) | 64, 67, 105, 256, 288, 295, 543, 832, 1057 |
| AclWI | GGATC | 3 cut(s) | 333, 346, 1193 |
| AcuI | CTGAAG | 3 cut(s) | 539, 659, 839 |
| AcyI | GRCGYC | 2 cut(s) | 87, 99 |
| AfaI | GTAC | 3 cut(s) | 429, 673, 1052 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 371, 838, 1123, 1166 |
| AflII | CTTAAG | 1 cut(s) | 886 |
| AflIII | ACRYGT | 1 cut(s) | 462 |
| AgeI | ACCGGT | 1 cut(s) | 869 |
| AgsI | TTSAA | 4 cut(s) | 553, 733, 799, 1229 |
| AjnI | CCWGG | 2 cut(s) | 353, 1021 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 700, 732 |
| AluBI | AGCT | 3 cut(s) | 489, 956, 1153 |
| AluI | AGCT | 3 cut(s) | 489, 956, 1153 |
| Alw21I | GWGCWC | 1 cut(s) | 1213 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| Alw44I | GTGCAC | 1 cut(s) | 1209 |
| AlwI | GGATC | 3 cut(s) | 333, 346, 1193 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 817 |
| Ama87I | CYCGRG | 2 cut(s) | 44, 177 |
| AoxI | GGCC | 3 cut(s) | 194, 319, 647 |
| ApaLI | GTGCAC | 1 cut(s) | 1209 |
| ApeKI | GCWGC | 1 cut(s) | 1153 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 84, 116, 473, 505 |
| AsiGI | ACCGGT | 1 cut(s) | 869 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 980, 1104, 1131 |
| AspLEI | GCGC | 1 cut(s) | 51 |
| AspS9I | GGNCC | 5 cut(s) | 185, 195, 647, 1019, 1169 |
| AsuHPI | GGTGA | 5 cut(s) | 142, 154, 606, 884, 1037 |
| AvaI | CYCGRG | 2 cut(s) | 44, 177 |
| AvaII | GGWCC | 3 cut(s) | 185, 1019, 1169 |
| BaeGI | GKGCMC | 2 cut(s) | 354, 1213 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1269, 1302 |
| BamHI | GGATCC | 1 cut(s) | 338 |
| BanII | GRGCYC | 1 cut(s) | 498 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 411, 443 |
| BauI | CACGAG | 1 cut(s) | 1206 |
| BbsI | GAAGAC | 1 cut(s) | 208 |
| Bbv12I | GWGCWC | 1 cut(s) | 1213 |
| BbvI | GCAGC | 1 cut(s) | 1140 |
| BccI | CCATC | 7 cut(s) | 146, 311, 466, 792, 1180, 1226, 1300 |
| BceAI | ACGGC | 1 cut(s) | 635 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1155, 1189 |
| BciT130I | CCWGG | 2 cut(s) | 355, 1023 |
| BciVI | GTATCC | 1 cut(s) | 1289 |
| BclI | TGATCA | 3 cut(s) | 405, 874, 901 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BfaI | CTAG | 1 cut(s) | 1191 |
| BfrI | CTTAAG | 1 cut(s) | 886 |
| BfuI | GTATCC | 1 cut(s) | 1289 |
| BisI | GCNGC | 3 cut(s) | 67, 105, 1154 |
| BlsI | GCNGC | 3 cut(s) | 68, 106, 1155 |
| Bme1390I | CCNGG | 2 cut(s) | 355, 1023 |
| Bme18I | GGWCC | 3 cut(s) | 185, 1019, 1169 |
| BmeT110I | CYCGRG | 2 cut(s) | 44, 177 |
| BmgT120I | GGNCC | 5 cut(s) | 185, 195, 647, 1019, 1169 |
| BmiI | GGNNCC | 4 cut(s) | 187, 340, 648, 868 |
| BmrFI | CCNGG | 2 cut(s) | 355, 1023 |
| BmrI | ACTGGG | 1 cut(s) | 1156 |
| BmsI | GCATC | 2 cut(s) | 631, 652 |
| BmuI | ACTGGG | 1 cut(s) | 1156 |
| BpiI | GAAGAC | 1 cut(s) | 208 |
| BsaAI | YACGTR | 1 cut(s) | 1054 |
| BsaBI | GATNNNNATC | 1 cut(s) | 783 |
| BsaHI | GRCGYC | 2 cut(s) | 87, 99 |
| BsaJI | CCNNGG | 4 cut(s) | 343, 353, 396, 617 |
| BsaWI | WCCGGW | 1 cut(s) | 869 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 275, 305 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 371, 838, 1123, 1166 |
| Bse118I | RCCGGY | 3 cut(s) | 299, 869, 1116 |
| Bse1I | ACTGG | 3 cut(s) | 868, 1151, 1160 |
| Bse3DI | GCAATG | 2 cut(s) | 504, 591 |
| Bse8I | GATNNNNATC | 1 cut(s) | 783 |
| BseBI | CCWGG | 2 cut(s) | 355, 1023 |
| BseDI | CCNNGG | 4 cut(s) | 343, 353, 396, 617 |
| BseGI | GGATG | 3 cut(s) | 392, 477, 622 |
| BseJI | GATNNNNATC | 1 cut(s) | 783 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 371, 838, 1123, 1166 |
| BseMI | GCAATG | 2 cut(s) | 504, 591 |
| BseMII | CTCAG | 3 cut(s) | 618, 769, 1316 |
| BseNI | ACTGG | 3 cut(s) | 868, 1151, 1160 |
| BseRI | GAGGAG | 5 cut(s) | 49, 194, 197, 200, 933 |
| BseSI | GKGCMC | 2 cut(s) | 354, 1213 |
| BseXI | GCAGC | 1 cut(s) | 1140 |
| BsgI | GTGCAG | 1 cut(s) | 379 |
| Bsh1236I | CGCG | 1 cut(s) | 51 |
| Bsh1285I | CGRYCG | 1 cut(s) | 449 |
| BshFI | GGCC | 3 cut(s) | 196, 321, 649 |
| BshTI | ACCGGT | 1 cut(s) | 869 |
| BsiEI | CGRYCG | 1 cut(s) | 449 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1213 |
| BsiHKCI | CYCGRG | 2 cut(s) | 44, 177 |
| BsiSI | CCGG | 4 cut(s) | 183, 300, 870, 1117 |
| BslFI | GGGAC | 1 cut(s) | 592 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 371, 838, 1123, 1166 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| BsmBI | CGTCTC | 1 cut(s) | 277 |
| BsmFI | GGGAC | 1 cut(s) | 592 |
| BsmI | GAATGC | 1 cut(s) | 559 |
| BsnI | GGCC | 3 cut(s) | 196, 321, 649 |
| BsoBI | CYCGRG | 2 cut(s) | 44, 177 |
| Bsp1286I | GDGCHC | 3 cut(s) | 354, 498, 1213 |
| Bsp143I | GATC | 7 cut(s) | 338, 405, 450, 751, 874, 901, 1198 |
| BspACI | CCGC | 9 cut(s) | 64, 67, 105, 256, 288, 295, 543, 832, 1057 |
| BspANI | GGCC | 3 cut(s) | 196, 321, 649 |
| BspCNI | CTCAG | 3 cut(s) | 619, 768, 1315 |
| BspFNI | CGCG | 1 cut(s) | 51 |
| BspLI | GGNNCC | 4 cut(s) | 187, 340, 648, 868 |
| BspPI | GGATC | 3 cut(s) | 333, 346, 1193 |
| BspTI | CTTAAG | 1 cut(s) | 886 |
| BsrBI | CCGCTC | 1 cut(s) | 543 |
| BsrDI | GCAATG | 2 cut(s) | 504, 591 |
| BsrFI | RCCGGY | 3 cut(s) | 299, 869, 1116 |
| BsrI | ACTGG | 3 cut(s) | 868, 1151, 1160 |
| BssAI | RCCGGY | 3 cut(s) | 299, 869, 1116 |
| BssECI | CCNNGG | 4 cut(s) | 343, 353, 396, 617 |
| BssMI | GATC | 7 cut(s) | 338, 405, 450, 751, 874, 901, 1198 |
| BssNI | GRCGYC | 2 cut(s) | 87, 99 |
| BssSI | CACGAG | 1 cut(s) | 1206 |
| BssT1I | CCWWGG | 1 cut(s) | 396 |
| Bst2BI | CACGAG | 1 cut(s) | 1206 |
| Bst2UI | CCWGG | 2 cut(s) | 355, 1023 |
| Bst4CI | ACNGT | 6 cut(s) | 382, 671, 932, 947, 1076, 1332 |
| Bst6I | CTCTTC | 1 cut(s) | 230 |
| BstACI | GRCGYC | 2 cut(s) | 87, 99 |
| BstAFI | CTTAAG | 1 cut(s) | 886 |
| BstBAI | YACGTR | 1 cut(s) | 1054 |
| BstC8I | GCNNGC | 3 cut(s) | 350, 651, 813 |
| BstDEI | CTNAG | 3 cut(s) | 627, 755, 1302 |
| BstDSI | CCRYGG | 1 cut(s) | 617 |
| BstF5I | GGATG | 3 cut(s) | 392, 477, 622 |
| BstFNI | CGCG | 1 cut(s) | 51 |
| BstHHI | GCGC | 1 cut(s) | 51 |
| BstKTI | GATC | 7 cut(s) | 341, 408, 453, 754, 877, 904, 1201 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 7 cut(s) | 338, 405, 450, 751, 874, 901, 1198 |
| BstMCI | CGRYCG | 1 cut(s) | 449 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 309, 318, 595, 821 |
| BstNI | CCWGG | 2 cut(s) | 355, 1023 |
| BstNSI | RCATGY | 1 cut(s) | 466 |
| BstSCI | CCNGG | 2 cut(s) | 353, 1021 |
| BstSLI | GKGCMC | 2 cut(s) | 354, 1213 |
| BstUI | CGCG | 1 cut(s) | 51 |
| BstV1I | GCAGC | 1 cut(s) | 1140 |
| BstV2I | GAAGAC | 1 cut(s) | 208 |
| BstX2I | RGATCY | 1 cut(s) | 338 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 491, 1259 |
| BstYI | RGATCY | 1 cut(s) | 338 |
| BsuI | GTATCC | 1 cut(s) | 1289 |
| BsuRI | GGCC | 3 cut(s) | 196, 321, 649 |
| BtgI | CCRYGG | 1 cut(s) | 617 |
| BtgZI | GCGATG | 1 cut(s) | 1158 |
| BtsCI | GGATG | 3 cut(s) | 392, 477, 622 |
| BtsIMutI | CAGTG | 3 cut(s) | 387, 952, 1167 |
| Cac8I | GCNNGC | 3 cut(s) | 350, 651, 813 |
| CaiI | CAGNNNCTG | 1 cut(s) | 817 |
| CfoI | GCGC | 1 cut(s) | 51 |
| Cfr10I | RCCGGY | 3 cut(s) | 299, 869, 1116 |
| Cfr13I | GGNCC | 5 cut(s) | 185, 195, 647, 1019, 1169 |
| CseI | GACGC | 3 cut(s) | 40, 95, 259 |
| CsiI | ACCWGGT | 1 cut(s) | 1021 |
| Csp6I | GTAC | 3 cut(s) | 428, 672, 1051 |
| CspAI | ACCGGT | 1 cut(s) | 869 |
| CviAII | CATG | 3 cut(s) | 463, 740, 1032 |
| CviQI | GTAC | 3 cut(s) | 428, 672, 1051 |
| DdeI | CTNAG | 3 cut(s) | 627, 755, 1302 |
| DpnI | GATC | 7 cut(s) | 340, 407, 452, 753, 876, 903, 1200 |
| DpnII | GATC | 7 cut(s) | 338, 405, 450, 751, 874, 901, 1198 |
| Eam1104I | CTCTTC | 1 cut(s) | 230 |
| EarI | CTCTTC | 1 cut(s) | 230 |
| EciI | GGCGGA | 1 cut(s) | 821 |
| Eco130I | CCWWGG | 1 cut(s) | 396 |
| Eco24I | GRGCYC | 1 cut(s) | 498 |
| Eco32I | GATATC | 1 cut(s) | 1323 |
| Eco47I | GGWCC | 3 cut(s) | 185, 1019, 1169 |
| Eco57I | CTGAAG | 3 cut(s) | 539, 659, 839 |
| Eco88I | CYCGRG | 2 cut(s) | 44, 177 |
| EcoO109I | RGGNCCY | 1 cut(s) | 647 |
| EcoRII | CCWGG | 2 cut(s) | 353, 1021 |
| EcoRV | GATATC | 1 cut(s) | 1323 |
| EcoT14I | CCWWGG | 1 cut(s) | 396 |
| EcoT38I | GRGCYC | 1 cut(s) | 498 |
| ErhI | CCWWGG | 1 cut(s) | 396 |
| Esp3I | CGTCTC | 1 cut(s) | 277 |
| FaeI | CATG | 3 cut(s) | 466, 743, 1035 |
| FaqI | GGGAC | 1 cut(s) | 592 |
| FatI | CATG | 3 cut(s) | 462, 739, 1031 |
| FauI | CCCGC | 5 cut(s) | 71, 263, 295, 302, 1050 |
| FauNDI | CATATG | 3 cut(s) | 655, 837, 1093 |
| FbaI | TGATCA | 3 cut(s) | 405, 874, 901 |
| Fnu4HI | GCNGC | 3 cut(s) | 67, 105, 1154 |
| FokI | GGATG | 3 cut(s) | 379, 484, 609 |
| FriOI | GRGCYC | 1 cut(s) | 498 |
| Fsp4HI | GCNGC | 3 cut(s) | 67, 105, 1154 |
| FspBI | CTAG | 1 cut(s) | 1191 |
| GlaI | GCGC | 1 cut(s) | 50 |
| GluI | GCNGC | 3 cut(s) | 67, 105, 1154 |
| HaeIII | GGCC | 3 cut(s) | 196, 321, 649 |
| HapII | CCGG | 4 cut(s) | 183, 300, 870, 1117 |
| HgaI | GACGC | 3 cut(s) | 40, 95, 259 |
| HhaI | GCGC | 1 cut(s) | 51 |
| Hin1I | GRCGYC | 2 cut(s) | 87, 99 |
| Hin1II | CATG | 3 cut(s) | 466, 743, 1035 |
| Hin6I | GCGC | 1 cut(s) | 49 |
| HinP1I | GCGC | 1 cut(s) | 49 |
| HinfI | GANTC | 6 cut(s) | 113, 159, 261, 326, 1127, 1272 |
| HpaII | CCGG | 4 cut(s) | 183, 300, 870, 1117 |
| HphI | GGTGA | 5 cut(s) | 142, 154, 606, 884, 1037 |
| Hpy166II | GTNNAC | 4 cut(s) | 1019, 1144, 1211, 1312 |
| Hpy188III | TCNNGA | 2 cut(s) | 626, 1136 |
| Hpy8I | GTNNAC | 4 cut(s) | 1019, 1144, 1211, 1312 |
| Hpy99I | CGWCG | 4 cut(s) | 89, 101, 104, 113 |
| HpyAV | CCTTC | 3 cut(s) | 154, 637, 814 |
| HpyCH4III | ACNGT | 6 cut(s) | 382, 671, 932, 947, 1076, 1332 |
| HpyCH4IV | ACGT | 2 cut(s) | 99, 1053 |
| HpyCH4V | TGCA | 4 cut(s) | 360, 653, 665, 1211 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 309, 318, 595, 821 |
| HpyF3I | CTNAG | 3 cut(s) | 627, 755, 1302 |
| HpySE526I | ACGT | 2 cut(s) | 99, 1053 |
| Hsp92I | GRCGYC | 2 cut(s) | 87, 99 |
| Hsp92II | CATG | 3 cut(s) | 466, 743, 1035 |
| HspAI | GCGC | 1 cut(s) | 49 |
| Ksp22I | TGATCA | 3 cut(s) | 405, 874, 901 |
| Kzo9I | GATC | 7 cut(s) | 338, 405, 450, 751, 874, 901, 1198 |
| LmnI | GCTCC | 1 cut(s) | 1150 |
| Lsp1109I | GCAGC | 1 cut(s) | 1140 |
| LweI | GCATC | 2 cut(s) | 631, 652 |
| MabI | ACCWGGT | 1 cut(s) | 1021 |
| MaeI | CTAG | 1 cut(s) | 1191 |
| MaeII | ACGT | 2 cut(s) | 99, 1053 |
| MaeIII | GTNAC | 1 cut(s) | 926 |
| MalI | GATC | 7 cut(s) | 340, 407, 452, 753, 876, 903, 1200 |
| MbiI | CCGCTC | 1 cut(s) | 543 |
| MboI | GATC | 7 cut(s) | 338, 405, 450, 751, 874, 901, 1198 |
| MboII | GAAGA | 9 cut(s) | 139, 208, 217, 226, 298, 652, 745, 1109, 1241 |
| MfeI | CAATTG | 1 cut(s) | 600 |
| MflI | RGATCY | 1 cut(s) | 338 |
| MhlI | GDGCHC | 3 cut(s) | 354, 498, 1213 |
| MluCI | AATT | 4 cut(s) | 600, 794, 853, 1131 |
| MmeI | TCCRAC | 1 cut(s) | 1276 |
| MroXI | GAANNNNTTC | 3 cut(s) | 980, 1104, 1131 |
| MseI | TTAA | 5 cut(s) | 887, 939, 1044, 1068, 1290 |
| MslI | CAYNNNNRTG | 2 cut(s) | 789, 1304 |
| MspCI | CTTAAG | 1 cut(s) | 886 |
| MspI | CCGG | 4 cut(s) | 183, 300, 870, 1117 |
| MspR9I | CCNGG | 2 cut(s) | 355, 1023 |
| MunI | CAATTG | 1 cut(s) | 600 |
| Mva1269I | GAATGC | 1 cut(s) | 559 |
| MvaI | CCWGG | 2 cut(s) | 355, 1023 |
| MvnI | CGCG | 1 cut(s) | 51 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 309, 318, 595, 821 |
| NdeI | CATATG | 3 cut(s) | 655, 837, 1093 |
| NdeII | GATC | 7 cut(s) | 338, 405, 450, 751, 874, 901, 1198 |
| NlaIII | CATG | 3 cut(s) | 466, 743, 1035 |
| NlaIV | GGNNCC | 4 cut(s) | 187, 340, 648, 868 |
| NmeAIII | GCCGAG | 1 cut(s) | 324 |
| NmuCI | GTSAC | 1 cut(s) | 926 |
| NspI | RCATGY | 1 cut(s) | 466 |
| PaeR7I | CTCGAG | 1 cut(s) | 44 |
| PciI | ACATGT | 1 cut(s) | 462 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 93, 105, 108, 321 |
| PctI | GAATGC | 1 cut(s) | 559 |
| PdmI | GAANNNNTTC | 3 cut(s) | 980, 1104, 1131 |
| PfeI | GAWTC | 6 cut(s) | 113, 159, 261, 326, 1127, 1272 |
| PflFI | GACNNNGTC | 1 cut(s) | 1260 |
| PinAI | ACCGGT | 1 cut(s) | 869 |
| PkrI | GCNGC | 3 cut(s) | 68, 106, 1155 |
| Ppu21I | YACGTR | 1 cut(s) | 1054 |
| PscI | ACATGT | 1 cut(s) | 462 |
| Psp6I | CCWGG | 2 cut(s) | 353, 1021 |
| PspGI | CCWGG | 2 cut(s) | 353, 1021 |
| PspN4I | GGNNCC | 4 cut(s) | 187, 340, 648, 868 |
| PspPI | GGNCC | 5 cut(s) | 185, 195, 647, 1019, 1169 |
| PspXI | VCTCGAGB | 1 cut(s) | 44 |
| PstNI | CAGNNNCTG | 1 cut(s) | 817 |
| PsuI | RGATCY | 1 cut(s) | 338 |
| PsyI | GACNNNGTC | 1 cut(s) | 1260 |
| RsaI | GTAC | 3 cut(s) | 429, 673, 1052 |
| RsaNI | GTAC | 3 cut(s) | 428, 672, 1051 |
| RseI | CAYNNNNRTG | 2 cut(s) | 789, 1304 |
| SaqAI | TTAA | 5 cut(s) | 887, 939, 1044, 1068, 1290 |
| SatI | GCNGC | 3 cut(s) | 67, 105, 1154 |
| Sau3AI | GATC | 7 cut(s) | 338, 405, 450, 751, 874, 901, 1198 |
| Sau96I | GGNCC | 5 cut(s) | 185, 195, 647, 1019, 1169 |
| ScrFI | CCNGG | 2 cut(s) | 355, 1023 |
| SduI | GDGCHC | 3 cut(s) | 354, 498, 1213 |
| SexAI | ACCWGGT | 1 cut(s) | 1021 |
| SfaNI | GCATC | 2 cut(s) | 631, 652 |
| Sfr274I | CTCGAG | 1 cut(s) | 44 |
| SinI | GGWCC | 3 cut(s) | 185, 1019, 1169 |
| SlaI | CTCGAG | 1 cut(s) | 44 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 789, 1304 |
| SmlI | CTYRAG | 2 cut(s) | 44, 886 |
| SmoI | CTYRAG | 2 cut(s) | 44, 886 |
| Sse9I | AATT | 4 cut(s) | 600, 794, 853, 1131 |
| SsiI | CCGC | 9 cut(s) | 64, 67, 105, 256, 288, 295, 543, 832, 1057 |
| SspMI | CTAG | 1 cut(s) | 1191 |
| StyD4I | CCNGG | 2 cut(s) | 353, 1021 |
| StyI | CCWWGG | 1 cut(s) | 396 |
| TaaI | ACNGT | 6 cut(s) | 382, 671, 932, 947, 1076, 1332 |
| TaiI | ACGT | 2 cut(s) | 102, 1056 |
| TaqI | TCGA | 5 cut(s) | 45, 315, 324, 777, 1275 |
| TaqII | GACCGA | 2 cut(s) | 379, 463 |
| TasI | AATT | 4 cut(s) | 600, 794, 853, 1131 |
| TatI | WGTACW | 1 cut(s) | 671 |
| TauI | GCSGC | 2 cut(s) | 69, 107 |
| TfiI | GAWTC | 6 cut(s) | 113, 159, 261, 326, 1127, 1272 |
| Tru1I | TTAA | 5 cut(s) | 887, 939, 1044, 1068, 1290 |
| Tru9I | TTAA | 5 cut(s) | 887, 939, 1044, 1068, 1290 |
| TscAI | CASTG | 3 cut(s) | 387, 952, 1167 |
| TseFI | GTSAC | 1 cut(s) | 926 |
| TseI | GCWGC | 1 cut(s) | 1153 |
| Tsp45I | GTSAC | 1 cut(s) | 926 |
| TspDTI | ATGAA | 6 cut(s) | 453, 493, 807, 966, 1023, 1110 |
| TspGWI | ACGGA | 1 cut(s) | 387 |
| TspRI | CASTG | 3 cut(s) | 387, 952, 1167 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1260 |
| Vha464I | CTTAAG | 1 cut(s) | 886 |
| VneI | GTGCAC | 1 cut(s) | 1209 |
| VpaK11BI | GGWCC | 3 cut(s) | 185, 1019, 1169 |
| XceI | RCATGY | 1 cut(s) | 466 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1029 |
| XhoI | CTCGAG | 1 cut(s) | 44 |
| XmnI | GAANNNNTTC | 3 cut(s) | 980, 1104, 1131 |
| XspI | CTAG | 1 cut(s) | 1191 |
| ZraI | GACGTC | 1 cut(s) | 100 |