pycom17g19730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015989
Physical Location & Seq
Forward (+)
17682004 .. 17684515
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g19730.3

Sequence Viewer

Length: 1338 bp
ATGCTACTCTCTCCGTCGAGCTCCACCCAAAGATCCCCCACCAAAATGCTCGATCGCGTCCTCTCCTCGCGCCGATACGCGCCGTACGCAGAAGACTCCGCCGTGGAAAATGACGTCGTCGCCGATGAGTCCAAGACCAAGAAGCACCTCCCCTTCTCCTTCTTCACCACCCGAATCACCAACTACTTGACCCGAACCGGACCCGTCTGGCCCTGCCTCCTCGTCCTTGCCCTCGTCCTCCTCCTCATCTTCAACTCCCGGCGATTCGTCTGCGTCTCGCCTTACGACCCGGTTTCTCGCACCGGCTTCTTCGGGTTCGATGGCCTCGAATCGGATATCGGATCACTCGGCGTGCCTTGGTGCAGATCGAAACACGGAAAAACAGTTGAGTGGACAACAAAGGATTTAATCAAGGGCTTGGAAGTGTTTATACCTATATACGAAACCCGACCAATAAAAAACAACATGTATGGGATGGGTTTTGACCACAGCTTTGGGCTCTGGTTCATTGCCCAGTGGCTGAAGCCGGATCTAATGATTGAGAGTGGCGCTTTCAAGGGTCATTCCACTTGGGTTTTGCGACAAGCGATGCCAGACGCTCCAATTATTACCCTCACACCCAAGCATCCTGGGAAGTTTCTAAAGAAGGGCCCTGCATATGTTGATGGAAACTGCACTTACTTTACCGGAAAAGATTTTTTGGATTTTGGAAATGTTAATTGGGGAAAAGTGATGAAGAAACATGGGATTACTGATCTCAGCCGTGTTCTTATTTTTTTCGATGATCATCAGAATGAACTGAAAAGAGTAACACAGGCTTTGAAAGCTGGTTTTCAGCACATAATTTTCGAGGATAATTATGATACTGGAACGGGAGATCATTATTCCTTACGGCAGATATGTGATCAATCCTATATAAGAGGAGGTGGTCACAGCTGCTATAAAGACAGCGATGAAGCTAGGATTAGGTCAAAAAGGAAGAAGTTCTGGGAGAAAGCGGTGGATATTGAAGAACTTTGTGGGCCTAGTGAAGCATGGTGGGGTGTTAGAGGATACATGCATGATAACTTTACTAAAAGTAGTAAGAAGATTTCCTATTCAGAACATTTTCAGAATAGTCGGTTTGTGGAATCGATTCTTGAGGTTTACTGGGAGGTGCCACCAGTGGCAGGTCCATCCCTCACTCATCAAACTAGATATGATCCTGCTCGTGCCGTAACTCCTATTGTTGAAGATGGCCGGTATGGCTTATTCAATCGGCTTGGTTTAACCAGACTCGACCCTTCTGTATTTAATGGATATACCCAGATGGTTTACGTTCAGATATCAAACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

446

Amino Acids

50.86

Weight (kDa)

8.84

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16200
fragaria_vesca FvH4_6g31940
malus_domestica MD09G1207900.v1.1 MD17G1189000.v1.1
prunus_persica Prupe.3G064100_v2.0.a1
pyrus_communis pycom09g12410 pycom17g19730
rosa_chinensis RchiOBHm_Chr2g0139361
rosa_laevigata RLG00000019808
rosa_multiflora Rmu_sc0004390.1_g000004
rosa_roxburghii Rroxscaffold_2G00105440
rosa_rugosa Rorug02G0357700
rosa_samantha Rh2DG426500
rosa_wichuraiana Rw2G032980 Rw2G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
Acc36I ACCTGC 1 cut(s) 1160
AccB1I GGYRCC 1 cut(s) 1156
AccII CGCG 3 cut(s) 57, 70, 80
AciI CCGC 2 cut(s) 99, 998
AclWI GGATC 4 cut(s) 27, 349, 537, 1196
AcoI YGGCCR 1 cut(s) 1237
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 331, 1169
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 6 cut(s) 253, 556, 823, 1010, 1232, 1255
AjnI CCWGG 1 cut(s) 628
AjuI GAANNNNNNNTTGG 2 cut(s) 703, 735
AluBI AGCT 5 cut(s) 21, 492, 827, 936, 959
AluI AGCT 5 cut(s) 21, 492, 827, 936, 959
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 4 cut(s) 27, 349, 537, 1196
AlwNI CAGNNNCTG 1 cut(s) 520
AoxI GGCC 5 cut(s) 209, 322, 649, 1022, 1237
ApaI GGGCCC 1 cut(s) 653
ApeKI GCWGC 1 cut(s) 936
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
Asp700I GAANNNNTTC 3 cut(s) 983, 1107, 1134
AspLEI GCGC 3 cut(s) 72, 82, 551
AspS9I GGNCC 6 cut(s) 200, 210, 649, 650, 1022, 1172
AsuC2I CCSGG 2 cut(s) 259, 290
AsuHPI GGTGA 2 cut(s) 157, 169
AvaII GGWCC 2 cut(s) 200, 1172
BaeGI GKGCMC 1 cut(s) 653
BanI GGYRCC 1 cut(s) 1156
BanII GRGCYC 3 cut(s) 23, 501, 653
BarI GAAGNNNNNNTAC 2 cut(s) 414, 446
BauI CACGAG 1 cut(s) 1209
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 923
BccI CCATC 6 cut(s) 314, 469, 659, 1183, 1229, 1303
BceAI ACGGC 5 cut(s) 67, 86, 747, 908, 1199
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BciT130I CCWGG 1 cut(s) 630
BciVI GTATCC 1 cut(s) 1046
BclI TGATCA 2 cut(s) 784, 904
BcnI CCSGG 2 cut(s) 259, 290
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 3 cut(s) 960, 1026, 1194
BfoI RGCGCY 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 1160
BfuI GTATCC 1 cut(s) 1046
BglI GCCNNNNNGGC 1 cut(s) 1245
BisI GCNGC 1 cut(s) 937
BlsI GCNGC 1 cut(s) 938
Bme1390I CCNGG 3 cut(s) 259, 290, 630
Bme18I GGWCC 2 cut(s) 200, 1172
BmgT120I GGNCC 6 cut(s) 200, 210, 649, 650, 1022, 1172
BmiI GGNNCC 3 cut(s) 202, 651, 1158
BmrFI CCNGG 3 cut(s) 259, 290, 630
BmrI ACTGGG 2 cut(s) 508, 1159
BmsI GCATC 2 cut(s) 579, 634
BmuI ACTGGG 2 cut(s) 508, 1159
BpiI GAAGAC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 1160
BpuMI CCSGG 2 cut(s) 259, 290
Bsa29I ATCGAT 1 cut(s) 1133
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 102, 356, 629
BsaWI WCCGGW 2 cut(s) 197, 686
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 1169
Bse118I RCCGGY 2 cut(s) 302, 1239
Bse1I ACTGG 5 cut(s) 514, 871, 1154, 1163, 1333
Bse3DI GCAATG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 1 cut(s) 630
BseCI ATCGAT 1 cut(s) 1133
BseDI CCNNGG 3 cut(s) 102, 356, 629
BseGI GGATG 3 cut(s) 480, 625, 1175
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 2 cut(s) 331, 1169
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 772
BseNI ACTGG 5 cut(s) 514, 871, 1154, 1163, 1333
BseRI GAGGAG 5 cut(s) 55, 209, 230, 233, 936
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 1 cut(s) 923
BsgI GTGCAG 2 cut(s) 382, 658
Bsh1236I CGCG 3 cut(s) 57, 70, 80
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 5 cut(s) 211, 324, 651, 1024, 1239
BshNI GGYRCC 1 cut(s) 1156
BshVI ATCGAT 1 cut(s) 1133
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 7 cut(s) 198, 259, 290, 303, 527, 687, 1240
BsiWI CGTACG 1 cut(s) 84
BslI CCNNNNNNNGG 2 cut(s) 331, 1169
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsnI GGCC 5 cut(s) 211, 324, 651, 1024, 1239
Bsp120I GGGCCC 1 cut(s) 649
Bsp1286I GDGCHC 3 cut(s) 23, 501, 653
BspACI CCGC 2 cut(s) 99, 998
BspANI GGCC 5 cut(s) 211, 324, 651, 1024, 1239
BspCNI CTCAG 1 cut(s) 771
BspDI ATCGAT 1 cut(s) 1133
BspFNI CGCG 3 cut(s) 57, 70, 80
BspLI GGNNCC 3 cut(s) 202, 651, 1158
BspMI ACCTGC 1 cut(s) 1160
BspPI GGATC 4 cut(s) 27, 349, 537, 1196
BspT107I GGYRCC 1 cut(s) 1156
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 2 cut(s) 302, 1239
BsrI ACTGG 5 cut(s) 514, 871, 1154, 1163, 1333
BssAI RCCGGY 2 cut(s) 302, 1239
BssECI CCNNGG 3 cut(s) 102, 356, 629
BssNI GRCGYC 1 cut(s) 114
BssSI CACGAG 1 cut(s) 1209
BssT1I CCWWGG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 1209
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 1 cut(s) 385
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 758
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 3 cut(s) 480, 625, 1175
BstFNI CGCG 3 cut(s) 57, 70, 80
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 3 cut(s) 72, 82, 551
BstMAI GTCTC 1 cut(s) 280
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 86, 824, 1245
BstNI CCWGG 1 cut(s) 630
BstNSI RCATGY 2 cut(s) 469, 1060
BstSCI CCNGG 3 cut(s) 257, 288, 628
BstSLI GKGCMC 1 cut(s) 653
BstUI CGCG 3 cut(s) 57, 70, 80
BstV1I GCAGC 1 cut(s) 923
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 2 cut(s) 32, 529
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 2 cut(s) 32, 529
Bsu15I ATCGAT 1 cut(s) 1133
BsuI GTATCC 1 cut(s) 1046
BsuRI GGCC 5 cut(s) 211, 324, 651, 1024, 1239
BsuTUI ATCGAT 1 cut(s) 1133
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 2 cut(s) 602, 966
BtsCI GGATG 3 cut(s) 480, 625, 1175
BtsIMutI CAGTG 2 cut(s) 521, 1170
BveI ACCTGC 1 cut(s) 1160
Cac8I GCNNGC 1 cut(s) 353
CaiI CAGNNNCTG 1 cut(s) 520
CfoI GCGC 3 cut(s) 72, 82, 551
Cfr10I RCCGGY 2 cut(s) 302, 1239
Cfr13I GGNCC 6 cut(s) 200, 210, 649, 650, 1022, 1172
ClaI ATCGAT 1 cut(s) 1133
CseI GACGC 3 cut(s) 46, 262, 605
Csp6I GTAC 1 cut(s) 85
CviAII CATG 5 cut(s) 466, 743, 1035, 1057, 1061
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 758
EaeI YGGCCR 1 cut(s) 1237
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 356
Eco24I GRGCYC 3 cut(s) 23, 501, 653
Eco32I GATATC 2 cut(s) 337, 1326
Eco47I GGWCC 2 cut(s) 200, 1172
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 21
EcoO109I RGGNCCY 2 cut(s) 649, 650
EcoRII CCWGG 1 cut(s) 628
EcoRV GATATC 2 cut(s) 337, 1326
EcoT14I CCWWGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 1062
EcoT38I GRGCYC 3 cut(s) 23, 501, 653
ErhI CCWWGG 1 cut(s) 356
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 5 cut(s) 469, 746, 1038, 1060, 1064
FatI CATG 5 cut(s) 465, 742, 1034, 1056, 1060
FauNDI CATATG 1 cut(s) 658
FbaI TGATCA 2 cut(s) 784, 904
Fnu4HI GCNGC 1 cut(s) 937
FokI GGATG 3 cut(s) 487, 612, 1162
FriOI GRGCYC 3 cut(s) 23, 501, 653
Fsp4HI GCNGC 1 cut(s) 937
FspBI CTAG 3 cut(s) 960, 1026, 1194
GlaI GCGC 3 cut(s) 71, 81, 550
GluI GCNGC 1 cut(s) 937
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 5 cut(s) 211, 324, 651, 1024, 1239
HapII CCGG 7 cut(s) 198, 259, 290, 303, 527, 687, 1240
HgaI GACGC 3 cut(s) 46, 262, 605
HhaI GCGC 3 cut(s) 72, 82, 551
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 5 cut(s) 469, 746, 1038, 1060, 1064
Hin6I GCGC 3 cut(s) 70, 80, 549
HinP1I GCGC 3 cut(s) 70, 80, 549
HinfI GANTC 8 cut(s) 95, 128, 174, 264, 329, 1130, 1135, 1275
HpaII CCGG 7 cut(s) 198, 259, 290, 303, 527, 687, 1240
HphI GGTGA 2 cut(s) 157, 169
Hpy166II GTNNAC 3 cut(s) 393, 1147, 1315
Hpy188I TCNGA 6 cut(s) 334, 341, 792, 1102, 1113, 1323
Hpy188III TCNNGA 1 cut(s) 1139
Hpy8I GTNNAC 3 cut(s) 393, 1147, 1315
Hpy99I CGWCG 3 cut(s) 19, 119, 122
HpyAV CCTTC 4 cut(s) 163, 169, 640, 1293
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 2 cut(s) 114, 1317
HpyCH4V TGCA 4 cut(s) 363, 656, 675, 1060
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 824, 1245
HpyF3I CTNAG 1 cut(s) 758
HpySE526I ACGT 2 cut(s) 114, 1317
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 5 cut(s) 469, 746, 1038, 1060, 1064
HspAI GCGC 3 cut(s) 70, 80, 549
Ksp22I TGATCA 2 cut(s) 784, 904
LmnI GCTCC 2 cut(s) 26, 604
Lsp1109I GCAGC 1 cut(s) 923
LweI GCATC 2 cut(s) 579, 634
MaeI CTAG 3 cut(s) 960, 1026, 1194
MaeII ACGT 2 cut(s) 114, 1317
MaeIII GTNAC 3 cut(s) 808, 929, 1216
MboII GAAGA 9 cut(s) 104, 154, 241, 301, 748, 991, 1022, 1099, 1244
MflI RGATCY 2 cut(s) 32, 529
MhlI GDGCHC 3 cut(s) 23, 501, 653
MluCI AATT 4 cut(s) 603, 718, 843, 856
MlyI GAGTC 3 cut(s) 89, 137, 1269
Mph1103I ATGCAT 1 cut(s) 1062
MroXI GAANNNNTTC 3 cut(s) 983, 1107, 1134
MseI TTAA 4 cut(s) 407, 717, 1268, 1293
MslI CAYNNNNRTG 2 cut(s) 44, 792
MspA1I CMGCKG 1 cut(s) 936
MspI CCGG 7 cut(s) 198, 259, 290, 303, 527, 687, 1240
MspR9I CCNGG 3 cut(s) 259, 290, 630
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 3 cut(s) 57, 70, 80
MwoI GCNNNNNNNGC 3 cut(s) 86, 824, 1245
NciI CCSGG 2 cut(s) 259, 290
NdeI CATATG 1 cut(s) 658
NlaIII CATG 5 cut(s) 469, 746, 1038, 1060, 1064
NlaIV GGNNCC 3 cut(s) 202, 651, 1158
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 929
NsiI ATGCAT 1 cut(s) 1062
NspI RCATGY 2 cut(s) 469, 1060
PciI ACATGT 1 cut(s) 465
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 324
PdmI GAANNNNTTC 3 cut(s) 983, 1107, 1134
PfeI GAWTC 5 cut(s) 174, 264, 329, 1130, 1135
Pfl23II CGTACG 1 cut(s) 84
PflFI GACNNNGTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 938
Ple19I CGATCG 1 cut(s) 55
PleI GAGTC 3 cut(s) 89, 136, 1269
PpsI GAGTC 3 cut(s) 89, 136, 1269
PscI ACATGT 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspLI CGTACG 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 202, 651, 1158
PspOMI GGGCCC 1 cut(s) 649
PspPI GGNCC 6 cut(s) 200, 210, 649, 650, 1022, 1172
PstNI CAGNNNCTG 1 cut(s) 520
PsuI RGATCY 2 cut(s) 32, 529
PsyI GACNNNGTC 1 cut(s) 116
PvuI CGATCG 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 936
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 2 cut(s) 44, 792
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 4 cut(s) 407, 717, 1268, 1293
SatI GCNGC 1 cut(s) 937
Sau96I GGNCC 6 cut(s) 200, 210, 649, 650, 1022, 1172
SchI GAGTC 3 cut(s) 89, 137, 1269
ScrFI CCNGG 3 cut(s) 259, 290, 630
SduI GDGCHC 3 cut(s) 23, 501, 653
SfaNI GCATC 2 cut(s) 579, 634
SinI GGWCC 2 cut(s) 200, 1172
SmiMI CAYNNNNRTG 2 cut(s) 44, 792
SmlI CTYRAG 1 cut(s) 1139
SmoI CTYRAG 1 cut(s) 1139
Sse9I AATT 4 cut(s) 603, 718, 843, 856
SsiI CCGC 2 cut(s) 99, 998
SspMI CTAG 3 cut(s) 960, 1026, 1194
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 257, 288, 628
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 2 cut(s) 117, 1320
TaqI TCGA 9 cut(s) 17, 51, 318, 327, 368, 780, 849, 1133, 1278
TasI AATT 4 cut(s) 603, 718, 843, 856
TfiI GAWTC 5 cut(s) 174, 264, 329, 1130, 1135
Tru1I TTAA 4 cut(s) 407, 717, 1268, 1293
Tru9I TTAA 4 cut(s) 407, 717, 1268, 1293
TscAI CASTG 2 cut(s) 521, 1170
TseFI GTSAC 1 cut(s) 929
TseI GCWGC 1 cut(s) 936
Tsp45I GTSAC 1 cut(s) 929
TspDTI ATGAA 4 cut(s) 496, 749, 810, 969
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 2 cut(s) 521, 1170
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 200, 1172
XceI RCATGY 2 cut(s) 469, 1060
XmnI GAANNNNTTC 3 cut(s) 983, 1107, 1134
XspI CTAG 3 cut(s) 960, 1026, 1194
ZraI GACGTC 1 cut(s) 115
Zsp2I ATGCAT 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.