Rorug02G0357700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015989
Physical Location & Seq
Forward (+)
45126902 .. 45132579
5678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0357700.1

Sequence Viewer

Length: 327 bp
ATGACGACGGAGCCAGGGGAGGATTGGGACTTGGCGTCGGTGAGGGCGGACAGGAGGGAGGAGATGACAGGGAGGCCGAGGCGGAGAAAGAGATTCTCTAAGCGCGATGTTGTTGAGGACAGTATTCTGTATTGGATTTTGATGTCAAGACTACGTGGCACTATATCCTTTGAAGCTGCTGGTGCTCTTGAGAAGTTTGTACAGAGTGATTATGGTGAAGATATAAGGGGTATCAGTAGATGGAATGAAGAACAAGTGAAGGATGGTGACCTTTTAGCGTCCAAAGAAAGCAATCTGAGCTGCGTTTCTTCAGCCCGGCAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.46

Weight (kDa)

5.58

Isoelectric Point (pI)

71.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16200
fragaria_vesca FvH4_6g31940
malus_domestica MD09G1207900.v1.1 MD17G1189000.v1.1
prunus_persica Prupe.3G064100_v2.0.a1
pyrus_communis pycom09g12410 pycom17g19730
rosa_chinensis RchiOBHm_Chr2g0139361
rosa_laevigata RLG00000019808
rosa_multiflora Rmu_sc0004390.1_g000004
rosa_roxburghii Rroxscaffold_2G00105440
rosa_rugosa Rorug02G0357700
rosa_samantha Rh2DG426500
rosa_wichuraiana Rw2G032980 Rw2G033240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 105
AciI CCGC 2 cut(s) 47, 82
AcuI CTGAAG 1 cut(s) 294
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 201
AgsI TTSAA 1 cut(s) 173
AhdI GACNNNNNGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 2 cut(s) 176, 300
AluI AGCT 2 cut(s) 176, 300
Alw21I GWGCWC 1 cut(s) 187
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 176, 300
AspLEI GCGC 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 3 cut(s) 52, 227, 278
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 163, 287
BccI CCATC 2 cut(s) 234, 257
BciT130I CCWGG 1 cut(s) 15
BcnI CCSGG 1 cut(s) 316
BfaI CTAG 1 cut(s) 325
BisI GCNGC 2 cut(s) 177, 301
BlsI GCNGC 2 cut(s) 178, 302
Bme1390I CCNGG 2 cut(s) 15, 316
BmeRI GACNNNNNGTC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 2 cut(s) 15, 316
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 14, 77
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 14, 77
BseGI GGATG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 287
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 163, 287
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 316
BslFI GGGAC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 187
Bsp1407I TGTACA 1 cut(s) 199
BspACI CCGC 2 cut(s) 47, 82
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 288
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 14, 77
BssNI GRCGYC 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 35
BstAUI TGTACA 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 99, 296
BstEII GGTNACC 1 cut(s) 266
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 182, 297
BstNI CCWGG 1 cut(s) 15
BstPI GGTNACC 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 13, 314
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 163, 287
BsuRI GGCC 1 cut(s) 76
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 268
CfoI GCGC 1 cut(s) 105
CseI GACGC 2 cut(s) 24, 267
Csp6I GTAC 1 cut(s) 200
CviJI RGCY 5 cut(s) 13, 76, 176, 300, 314
CviKI_1 RGCY 5 cut(s) 13, 76, 176, 300, 314
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 2 cut(s) 99, 296
DriI GACNNNNNGTC 1 cut(s) 34
Eam1105I GACNNNNNGTC 1 cut(s) 34
EciI GGCGGA 2 cut(s) 62, 97
Eco57I CTGAAG 1 cut(s) 294
Eco91I GGTNACC 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 13
FaiI YATR 3 cut(s) 164, 213, 224
FaqI GGGAC 1 cut(s) 41
Fnu4HI GCNGC 2 cut(s) 177, 301
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 2 cut(s) 177, 301
FspBI CTAG 1 cut(s) 325
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 177, 301
HaeIII GGCC 1 cut(s) 76
HapII CCGG 1 cut(s) 316
HgaI GACGC 2 cut(s) 24, 267
HhaI GCGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 35
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 93
HpaII CCGG 1 cut(s) 316
HphI GGTGA 3 cut(s) 52, 227, 278
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 2 cut(s) 147, 188
Hpy99I CGWCG 2 cut(s) 10, 40
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 297
HpyF3I CTNAG 2 cut(s) 99, 296
HpySE526I ACGT 1 cut(s) 154
Hsp92I GRCGYC 1 cut(s) 35
HspAI GCGC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 27, 37, 54, 165
Lsp1109I GCAGC 2 cut(s) 163, 287
MaeI CTAG 1 cut(s) 325
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 266
MboII GAAGA 3 cut(s) 230, 260, 300
MhlI GDGCHC 1 cut(s) 187
MnlI CCTC 7 cut(s) 13, 36, 48, 52, 66, 72, 109
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 2 cut(s) 15, 316
MvaI CCWGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 182, 297
NciI CCSGG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 12
NmeAIII GCCGAG 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 2 cut(s) 178, 302
Ppu21I YACGTR 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 13
PspEI GGTNACC 1 cut(s) 266
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 12
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SatI GCNGC 2 cut(s) 177, 301
ScrFI CCNGG 2 cut(s) 15, 316
SduI GDGCHC 1 cut(s) 187
SetI ASST 4 cut(s) 157, 178, 273, 302
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SsiI CCGC 2 cut(s) 47, 82
SspMI CTAG 1 cut(s) 325
StyD4I CCNGG 2 cut(s) 13, 314
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 157
TatI WGTACW 1 cut(s) 199
TfiI GAWTC 1 cut(s) 93
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 2 cut(s) 176, 300
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 261
TspGWI ACGGA 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XspI CTAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.