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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16200 |
| fragaria_vesca | FvH4_6g31940 |
| malus_domestica | MD09G1207900.v1.1 MD17G1189000.v1.1 |
| prunus_persica | Prupe.3G064100_v2.0.a1 |
| pyrus_communis | pycom09g12410 pycom17g19730 |
| rosa_chinensis | RchiOBHm_Chr2g0139361 |
| rosa_laevigata | RLG00000019808 |
| rosa_multiflora | Rmu_sc0004390.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00105440 |
| rosa_rugosa | Rorug02G0357700 |
| rosa_samantha | Rh2DG426500 |
| rosa_wichuraiana | Rw2G032980 Rw2G033240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 623 |
| Acc16I | TGCGCA | 1 cut(s) | 528 |
| Acc36I | ACCTGC | 1 cut(s) | 1181 |
| AccB1I | GGYRCC | 1 cut(s) | 1177 |
| AccBSI | CCGCTC | 1 cut(s) | 561 |
| AccII | CGCG | 3 cut(s) | 80, 89, 101 |
| AciI | CCGC | 6 cut(s) | 70, 89, 99, 101, 561, 595 |
| AclWI | GGATC | 4 cut(s) | 351, 364, 1217, 1295 |
| AcoI | YGGCCR | 3 cut(s) | 102, 775, 1258 |
| AcuI | CTGAAG | 2 cut(s) | 557, 1325 |
| AfaI | GTAC | 1 cut(s) | 447 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 72, 346, 1190 |
| AflII | CTTAAG | 1 cut(s) | 904 |
| AgsI | TTSAA | 6 cut(s) | 24, 268, 404, 571, 1151, 1253 |
| AjnI | CCWGG | 2 cut(s) | 371, 1039 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 336, 368, 718, 750 |
| AluBI | AGCT | 6 cut(s) | 122, 507, 842, 951, 974, 1108 |
| AluI | AGCT | 6 cut(s) | 122, 507, 842, 951, 974, 1108 |
| Alw26I | GTCTC | 2 cut(s) | 295, 885 |
| AlwI | GGATC | 4 cut(s) | 351, 364, 1217, 1295 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 535, 835 |
| AoxI | GGCC | 7 cut(s) | 102, 212, 337, 665, 775, 1036, 1258 |
| ApeKI | GCWGC | 2 cut(s) | 122, 951 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 491, 523 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 998, 1128, 1155 |
| AspLEI | GCGC | 2 cut(s) | 82, 529 |
| AspS9I | GGNCC | 5 cut(s) | 203, 213, 665, 1037, 1193 |
| AsuC2I | CCSGG | 2 cut(s) | 274, 305 |
| AsuHPI | GGTGA | 4 cut(s) | 27, 172, 1055, 1195 |
| AvaII | GGWCC | 2 cut(s) | 203, 1193 |
| BaeGI | GKGCMC | 1 cut(s) | 372 |
| BamHI | GGATCC | 1 cut(s) | 356 |
| BanI | GGYRCC | 1 cut(s) | 1177 |
| BanII | GRGCYC | 2 cut(s) | 61, 516 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 429, 461 |
| BauI | CACGAG | 1 cut(s) | 1230 |
| BbvI | GCAGC | 2 cut(s) | 109, 938 |
| BccI | CCATC | 9 cut(s) | 164, 329, 484, 674, 810, 1204, 1215, 1250, 1324 |
| BceAI | ACGGC | 4 cut(s) | 101, 653, 762, 1295 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 95, 129 |
| BciT130I | CCWGG | 2 cut(s) | 373, 1041 |
| BclI | TGATCA | 1 cut(s) | 919 |
| BcnI | CCSGG | 2 cut(s) | 274, 305 |
| BcoDI | GTCTC | 2 cut(s) | 295, 885 |
| BfaI | CTAG | 3 cut(s) | 857, 975, 1215 |
| BfrI | CTTAAG | 1 cut(s) | 904 |
| BfuAI | ACCTGC | 1 cut(s) | 1181 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1266 |
| BglII | AGATCT | 1 cut(s) | 544 |
| BisI | GCNGC | 5 cut(s) | 99, 102, 123, 596, 952 |
| BlsI | GCNGC | 5 cut(s) | 100, 103, 124, 597, 953 |
| Bme1390I | CCNGG | 4 cut(s) | 274, 305, 373, 1041 |
| Bme18I | GGWCC | 2 cut(s) | 203, 1193 |
| BmgT120I | GGNCC | 5 cut(s) | 203, 213, 665, 1037, 1193 |
| BmiI | GGNNCC | 3 cut(s) | 358, 666, 1179 |
| BmrFI | CCNGG | 4 cut(s) | 274, 305, 373, 1041 |
| BmrI | ACTGGG | 1 cut(s) | 1180 |
| BmsI | GCATC | 2 cut(s) | 103, 649 |
| BmuI | ACTGGG | 1 cut(s) | 1180 |
| BpuMI | CCSGG | 2 cut(s) | 274, 305 |
| BsaBI | GATNNNNATC | 1 cut(s) | 801 |
| BsaI | GGTCTC | 1 cut(s) | 885 |
| BsaJI | CCNNGG | 5 cut(s) | 99, 361, 371, 635, 1039 |
| BsaWI | WCCGGW | 1 cut(s) | 200 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 72, 346, 1190 |
| Bse118I | RCCGGY | 1 cut(s) | 1260 |
| Bse1I | ACTGG | 5 cut(s) | 206, 481, 886, 1175, 1184 |
| Bse3DI | GCAATG | 2 cut(s) | 522, 609 |
| Bse8I | GATNNNNATC | 1 cut(s) | 801 |
| BseBI | CCWGG | 2 cut(s) | 373, 1041 |
| BseDI | CCNNGG | 5 cut(s) | 99, 361, 371, 635, 1039 |
| BseGI | GGATG | 4 cut(s) | 495, 640, 1084, 1196 |
| BseJI | GATNNNNATC | 1 cut(s) | 801 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 72, 346, 1190 |
| BseMI | GCAATG | 2 cut(s) | 522, 609 |
| BseMII | CTCAG | 1 cut(s) | 1340 |
| BseNI | ACTGG | 5 cut(s) | 206, 481, 886, 1175, 1184 |
| BseRI | GAGGAG | 5 cut(s) | 55, 212, 233, 236, 951 |
| BseSI | GKGCMC | 1 cut(s) | 372 |
| BseX3I | CGGCCG | 2 cut(s) | 102, 775 |
| BseXI | GCAGC | 2 cut(s) | 109, 938 |
| BsgI | GTGCAG | 3 cut(s) | 397, 673, 1254 |
| Bsh1236I | CGCG | 3 cut(s) | 80, 89, 101 |
| Bsh1285I | CGRYCG | 2 cut(s) | 105, 778 |
| BshFI | GGCC | 7 cut(s) | 104, 214, 339, 667, 777, 1038, 1260 |
| BshNI | GGYRCC | 1 cut(s) | 1177 |
| BsiEI | CGRYCG | 2 cut(s) | 105, 778 |
| BsiSI | CCGG | 6 cut(s) | 73, 201, 274, 305, 318, 1261 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 72, 346, 1190 |
| BsmAI | GTCTC | 2 cut(s) | 295, 885 |
| BsmBI | CGTCTC | 1 cut(s) | 295 |
| BsmI | GAATGC | 1 cut(s) | 577 |
| BsnI | GGCC | 7 cut(s) | 104, 214, 339, 667, 777, 1038, 1260 |
| Bso31I | GGTCTC | 1 cut(s) | 885 |
| Bsp1286I | GDGCHC | 3 cut(s) | 61, 372, 516 |
| Bsp143I | GATC | 8 cut(s) | 32, 356, 380, 544, 769, 919, 1222, 1300 |
| BspACI | CCGC | 6 cut(s) | 70, 89, 99, 101, 561, 595 |
| BspANI | GGCC | 7 cut(s) | 104, 214, 339, 667, 777, 1038, 1260 |
| BspCNI | CTCAG | 1 cut(s) | 1339 |
| BspFNI | CGCG | 3 cut(s) | 80, 89, 101 |
| BspLI | GGNNCC | 3 cut(s) | 358, 666, 1179 |
| BspMI | ACCTGC | 1 cut(s) | 1181 |
| BspPI | GGATC | 4 cut(s) | 351, 364, 1217, 1295 |
| BspT107I | GGYRCC | 1 cut(s) | 1177 |
| BspTI | CTTAAG | 1 cut(s) | 904 |
| BspTNI | GGTCTC | 1 cut(s) | 885 |
| BsrBI | CCGCTC | 1 cut(s) | 561 |
| BsrDI | GCAATG | 2 cut(s) | 522, 609 |
| BsrFI | RCCGGY | 1 cut(s) | 1260 |
| BsrI | ACTGG | 5 cut(s) | 206, 481, 886, 1175, 1184 |
| BssAI | RCCGGY | 1 cut(s) | 1260 |
| BssECI | CCNNGG | 5 cut(s) | 99, 361, 371, 635, 1039 |
| BssMI | GATC | 8 cut(s) | 32, 356, 380, 544, 769, 919, 1222, 1300 |
| BssSI | CACGAG | 1 cut(s) | 1230 |
| BssT1I | CCWWGG | 1 cut(s) | 361 |
| Bst2BI | CACGAG | 1 cut(s) | 1230 |
| Bst2UI | CCWGG | 2 cut(s) | 373, 1041 |
| Bst4CI | ACNGT | 4 cut(s) | 400, 965, 1094, 1356 |
| BstAFI | CTTAAG | 1 cut(s) | 904 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 604 |
| BstC8I | GCNNGC | 4 cut(s) | 368, 600, 669, 831 |
| BstDEI | CTNAG | 1 cut(s) | 1326 |
| BstDSI | CCRYGG | 2 cut(s) | 99, 635 |
| BstF5I | GGATG | 4 cut(s) | 495, 640, 1084, 1196 |
| BstFNI | CGCG | 3 cut(s) | 80, 89, 101 |
| BstHHI | GCGC | 2 cut(s) | 82, 529 |
| BstKTI | GATC | 8 cut(s) | 35, 359, 383, 547, 772, 922, 1225, 1303 |
| BstMAI | GTCTC | 2 cut(s) | 295, 885 |
| BstMBI | GATC | 8 cut(s) | 32, 356, 380, 544, 769, 919, 1222, 1300 |
| BstMCI | CGRYCG | 2 cut(s) | 105, 778 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 86, 95, 122, 604, 613, 839, 1266 |
| BstNI | CCWGG | 2 cut(s) | 373, 1041 |
| BstSCI | CCNGG | 4 cut(s) | 272, 303, 371, 1039 |
| BstSLI | GKGCMC | 1 cut(s) | 372 |
| BstUI | CGCG | 3 cut(s) | 80, 89, 101 |
| BstV1I | GCAGC | 2 cut(s) | 109, 938 |
| BstX2I | RGATCY | 2 cut(s) | 356, 544 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 509, 1283 |
| BstYI | RGATCY | 2 cut(s) | 356, 544 |
| BstZI | CGGCCG | 2 cut(s) | 102, 775 |
| BsuRI | GGCC | 7 cut(s) | 104, 214, 339, 667, 777, 1038, 1260 |
| BtgI | CCRYGG | 2 cut(s) | 99, 635 |
| BtsCI | GGATG | 4 cut(s) | 495, 640, 1084, 1196 |
| BtsI | GCAGTG | 2 cut(s) | 536, 1020 |
| BtsIMutI | CAGTG | 4 cut(s) | 536, 970, 1020, 1191 |
| BveI | ACCTGC | 1 cut(s) | 1181 |
| Cac8I | GCNNGC | 4 cut(s) | 368, 600, 669, 831 |
| CaiI | CAGNNNCTG | 2 cut(s) | 535, 835 |
| CfoI | GCGC | 2 cut(s) | 82, 529 |
| Cfr10I | RCCGGY | 1 cut(s) | 1260 |
| Cfr13I | GGNCC | 5 cut(s) | 203, 213, 665, 1037, 1193 |
| Cfr42I | CCGCGG | 1 cut(s) | 102 |
| CseI | GACGC | 1 cut(s) | 277 |
| Csp6I | GTAC | 1 cut(s) | 446 |
| CviAII | CATG | 3 cut(s) | 389, 758, 1050 |
| CviQI | GTAC | 1 cut(s) | 446 |
| DdeI | CTNAG | 1 cut(s) | 1326 |
| DpnI | GATC | 8 cut(s) | 34, 358, 382, 546, 771, 921, 1224, 1302 |
| DpnII | GATC | 8 cut(s) | 32, 356, 380, 544, 769, 919, 1222, 1300 |
| DraI | TTTAAA | 2 cut(s) | 657, 958 |
| EaeI | YGGCCR | 3 cut(s) | 102, 775, 1258 |
| EagI | CGGCCG | 2 cut(s) | 102, 775 |
| EclXI | CGGCCG | 2 cut(s) | 102, 775 |
| Eco130I | CCWWGG | 1 cut(s) | 361 |
| Eco24I | GRGCYC | 2 cut(s) | 61, 516 |
| Eco31I | GGTCTC | 1 cut(s) | 885 |
| Eco47I | GGWCC | 2 cut(s) | 203, 1193 |
| Eco52I | CGGCCG | 2 cut(s) | 102, 775 |
| Eco57I | CTGAAG | 2 cut(s) | 557, 1325 |
| EcoO109I | RGGNCCY | 1 cut(s) | 665 |
| EcoRII | CCWGG | 2 cut(s) | 371, 1039 |
| EcoT14I | CCWWGG | 1 cut(s) | 361 |
| EcoT38I | GRGCYC | 2 cut(s) | 61, 516 |
| ErhI | CCWWGG | 1 cut(s) | 361 |
| Esp3I | CGTCTC | 1 cut(s) | 295 |
| FaeI | CATG | 3 cut(s) | 392, 761, 1053 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 134, 166 |
| FatI | CATG | 3 cut(s) | 388, 757, 1049 |
| FauI | CCCGC | 2 cut(s) | 77, 554 |
| FauNDI | CATATG | 1 cut(s) | 673 |
| FbaI | TGATCA | 1 cut(s) | 919 |
| Fnu4HI | GCNGC | 5 cut(s) | 99, 102, 123, 596, 952 |
| FokI | GGATG | 4 cut(s) | 502, 627, 1091, 1183 |
| FriOI | GRGCYC | 2 cut(s) | 61, 516 |
| Fsp4HI | GCNGC | 5 cut(s) | 99, 102, 123, 596, 952 |
| FspBI | CTAG | 3 cut(s) | 857, 975, 1215 |
| FspI | TGCGCA | 1 cut(s) | 528 |
| GlaI | GCGC | 2 cut(s) | 81, 528 |
| GluI | GCNGC | 5 cut(s) | 99, 102, 123, 596, 952 |
| HaeIII | GGCC | 7 cut(s) | 104, 214, 339, 667, 777, 1038, 1260 |
| HapII | CCGG | 6 cut(s) | 73, 201, 274, 305, 318, 1261 |
| HgaI | GACGC | 1 cut(s) | 277 |
| HhaI | GCGC | 2 cut(s) | 82, 529 |
| Hin1II | CATG | 3 cut(s) | 392, 761, 1053 |
| Hin6I | GCGC | 2 cut(s) | 80, 527 |
| HinP1I | GCGC | 2 cut(s) | 80, 527 |
| HinfI | GANTC | 6 cut(s) | 131, 177, 279, 344, 1151, 1296 |
| HpaII | CCGG | 6 cut(s) | 73, 201, 274, 305, 318, 1261 |
| HphI | GGTGA | 4 cut(s) | 27, 172, 1055, 1195 |
| Hpy166II | GTNNAC | 1 cut(s) | 1168 |
| Hpy188I | TCNGA | 8 cut(s) | 349, 549, 837, 1064, 1123, 1134, 1329, 1344 |
| Hpy188III | TCNNGA | 4 cut(s) | 644, 702, 987, 1160 |
| Hpy8I | GTNNAC | 1 cut(s) | 1168 |
| Hpy99I | CGWCG | 1 cut(s) | 131 |
| HpyAV | CCTTC | 7 cut(s) | 24, 172, 236, 655, 984, 1314, 1349 |
| HpyCH4III | ACNGT | 4 cut(s) | 400, 965, 1094, 1356 |
| HpyCH4V | TGCA | 4 cut(s) | 378, 671, 690, 1235 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 86, 95, 122, 604, 613, 839, 1266 |
| HpyF3I | CTNAG | 1 cut(s) | 1326 |
| Hsp92II | CATG | 3 cut(s) | 392, 761, 1053 |
| HspAI | GCGC | 2 cut(s) | 80, 527 |
| Ksp22I | TGATCA | 1 cut(s) | 919 |
| KspI | CCGCGG | 1 cut(s) | 102 |
| Kzo9I | GATC | 8 cut(s) | 32, 356, 380, 544, 769, 919, 1222, 1300 |
| LmnI | GCTCC | 1 cut(s) | 320 |
| Lsp1109I | GCAGC | 2 cut(s) | 109, 938 |
| LweI | GCATC | 2 cut(s) | 103, 649 |
| MaeI | CTAG | 3 cut(s) | 857, 975, 1215 |
| MaeIII | GTNAC | 2 cut(s) | 944, 1237 |
| MalI | GATC | 8 cut(s) | 34, 358, 382, 546, 771, 921, 1224, 1302 |
| MbiI | CCGCTC | 1 cut(s) | 561 |
| MboI | GATC | 8 cut(s) | 32, 356, 380, 544, 769, 919, 1222, 1300 |
| MboII | GAAGA | 8 cut(s) | 12, 157, 244, 256, 316, 763, 1006, 1265 |
| MflI | RGATCY | 2 cut(s) | 356, 544 |
| MhlI | GDGCHC | 3 cut(s) | 61, 372, 516 |
| MluCI | AATT | 3 cut(s) | 618, 871, 1155 |
| MlyI | GAGTC | 2 cut(s) | 140, 1290 |
| MmeI | TCCRAC | 1 cut(s) | 1300 |
| MroXI | GAANNNNTTC | 3 cut(s) | 998, 1128, 1155 |
| MseI | TTAA | 7 cut(s) | 422, 656, 905, 957, 1086, 1289, 1314 |
| MslI | CAYNNNNRTG | 1 cut(s) | 807 |
| MspA1I | CMGCKG | 2 cut(s) | 101, 951 |
| MspCI | CTTAAG | 1 cut(s) | 904 |
| MspI | CCGG | 6 cut(s) | 73, 201, 274, 305, 318, 1261 |
| MspR9I | CCNGG | 4 cut(s) | 274, 305, 373, 1041 |
| Mva1269I | GAATGC | 1 cut(s) | 577 |
| MvaI | CCWGG | 2 cut(s) | 373, 1041 |
| MvnI | CGCG | 3 cut(s) | 80, 89, 101 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 86, 95, 122, 604, 613, 839, 1266 |
| NciI | CCSGG | 2 cut(s) | 274, 305 |
| NdeI | CATATG | 1 cut(s) | 673 |
| NdeII | GATC | 8 cut(s) | 32, 356, 380, 544, 769, 919, 1222, 1300 |
| NlaIII | CATG | 3 cut(s) | 392, 761, 1053 |
| NlaIV | GGNNCC | 3 cut(s) | 358, 666, 1179 |
| NmeAIII | GCCGAG | 1 cut(s) | 753 |
| NmuCI | GTSAC | 1 cut(s) | 944 |
| NsbI | TGCGCA | 1 cut(s) | 528 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 339 |
| PctI | GAATGC | 1 cut(s) | 577 |
| PdmI | GAANNNNTTC | 3 cut(s) | 998, 1128, 1155 |
| PfeI | GAWTC | 4 cut(s) | 177, 279, 344, 1151 |
| PfoI | TCCNGGA | 1 cut(s) | 272 |
| PkrI | GCNGC | 5 cut(s) | 100, 103, 124, 597, 953 |
| PleI | GAGTC | 2 cut(s) | 139, 1290 |
| PpsI | GAGTC | 2 cut(s) | 139, 1290 |
| PsiI | TTATAA | 1 cut(s) | 623 |
| Psp6I | CCWGG | 2 cut(s) | 371, 1039 |
| PspGI | CCWGG | 2 cut(s) | 371, 1039 |
| PspN4I | GGNNCC | 3 cut(s) | 358, 666, 1179 |
| PspPI | GGNCC | 5 cut(s) | 203, 213, 665, 1037, 1193 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 68, 100, 677, 709 |
| PstNI | CAGNNNCTG | 2 cut(s) | 535, 835 |
| PsuI | RGATCY | 2 cut(s) | 356, 544 |
| PvuII | CAGCTG | 1 cut(s) | 951 |
| RsaI | GTAC | 1 cut(s) | 447 |
| RsaNI | GTAC | 1 cut(s) | 446 |
| RseI | CAYNNNNRTG | 1 cut(s) | 807 |
| SacII | CCGCGG | 1 cut(s) | 102 |
| SaqAI | TTAA | 7 cut(s) | 422, 656, 905, 957, 1086, 1289, 1314 |
| SatI | GCNGC | 5 cut(s) | 99, 102, 123, 596, 952 |
| Sau3AI | GATC | 8 cut(s) | 32, 356, 380, 544, 769, 919, 1222, 1300 |
| Sau96I | GGNCC | 5 cut(s) | 203, 213, 665, 1037, 1193 |
| SchI | GAGTC | 2 cut(s) | 140, 1290 |
| ScrFI | CCNGG | 4 cut(s) | 274, 305, 373, 1041 |
| SduI | GDGCHC | 3 cut(s) | 61, 372, 516 |
| SfaNI | GCATC | 2 cut(s) | 103, 649 |
| Sfr303I | CCGCGG | 1 cut(s) | 102 |
| SgrBI | CCGCGG | 1 cut(s) | 102 |
| SinI | GGWCC | 2 cut(s) | 203, 1193 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 807 |
| SmlI | CTYRAG | 1 cut(s) | 904 |
| SmoI | CTYRAG | 1 cut(s) | 904 |
| Sse9I | AATT | 3 cut(s) | 618, 871, 1155 |
| SsiI | CCGC | 6 cut(s) | 70, 89, 99, 101, 561, 595 |
| SspMI | CTAG | 3 cut(s) | 857, 975, 1215 |
| StyD4I | CCNGG | 4 cut(s) | 272, 303, 371, 1039 |
| StyI | CCWWGG | 1 cut(s) | 361 |
| TaaI | ACNGT | 4 cut(s) | 400, 965, 1094, 1356 |
| TaqI | TCGA | 8 cut(s) | 51, 333, 342, 383, 795, 850, 864, 1299 |
| TasI | AATT | 3 cut(s) | 618, 871, 1155 |
| TauI | GCSGC | 3 cut(s) | 101, 104, 598 |
| TfiI | GAWTC | 4 cut(s) | 177, 279, 344, 1151 |
| Tru1I | TTAA | 7 cut(s) | 422, 656, 905, 957, 1086, 1289, 1314 |
| Tru9I | TTAA | 7 cut(s) | 422, 656, 905, 957, 1086, 1289, 1314 |
| TscAI | CASTG | 4 cut(s) | 536, 970, 1020, 1191 |
| TseFI | GTSAC | 1 cut(s) | 944 |
| TseI | GCWGC | 2 cut(s) | 122, 951 |
| Tsp45I | GTSAC | 1 cut(s) | 944 |
| TspDTI | ATGAA | 6 cut(s) | 6, 471, 511, 764, 825, 984 |
| TspRI | CASTG | 4 cut(s) | 536, 970, 1020, 1191 |
| Vha464I | CTTAAG | 1 cut(s) | 904 |
| VpaK11BI | GGWCC | 2 cut(s) | 203, 1193 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1047 |
| XmnI | GAANNNNTTC | 3 cut(s) | 998, 1128, 1155 |
| XspI | CTAG | 3 cut(s) | 857, 975, 1215 |