Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007458

Physical Location & Seq

Genomic Coordinates Reverse (-)

5526249 .. 5528602

Gene Structure 2354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGTGCTGCAGCACACAGGACTCCTAAATCAGGGAGGCAATCTCTGCTATTTCAAGATTTAGCTTCTCCTGTTTCAGCACGTAGAGGGAAATTCTCGAGTCCGGGACAGGCAGCTGCGGTATCTGCACTATGGCGTGAGAATTTCGGAGGATCTGATCTTCCACCACCTCCAATGTATACTTTGGATGACCGGTCCGATTTCTCTCCTGAGTCTGGTATTGCAGACTACTCTGCGTCTCCAGATGCTAAGTCTGACAGAAGAACACCATTCCAGAGTTCTGGAAAGAATATTGTAACTCCTGGTAAAGGAAAGTTGGAAGCAAGCCCTTCTTTTTCTCTACTGAATGCACAACAGAGTCAGCAAGTTTCAGGGAGTCCGAGTTGGTGGTCGCAGTCAAAGGCAGGTAGTAGTACCGAGCAGGATGATAAAGGGAAGGGATCTCCTGTAGAAGGGGTGGTTCAGCCAGGTGCATTGGTCACTCTTCCGCCGCCAAGAGAAGTTGCTAGGCCAGAGGTTCAGAGGCAGATTATACCTACAGGAAACCTTGATGAGGAAGAGTGGGTCACTGTCTATGGATTTTCTCCAGGTGATACAAATTTAGTACTACGGGAGTTTGAAAAATGTGGTATGGTCTTGAAACATGTTCCTGGTCCAAGAAATGCCAACTGGATGCACATCCTCTACCAGAACCGGTCTGATGCACATAAGGCGCTGAACAAAGCAGGGATGATGATAAACGGAGTTGTAATAGTAGGAGTGAAGCCAGTAGACCCAATACAGAAGCAAGCGTTAAACGAGAGACTCAACAACCAAGGATTCATGCCTTTACCTCCACCATCATCCACTAGAAACACTGCTCGACCCCTGTCTCGTCCTCAGTACTTGCAAAACGGCAGCGCTTTCTCTCCTCAACCAAGTGGTGGCGCTATGGCCTCTCCGTCAAAGTCAATGGTCTCAAAGTTCTTTGACTTGATGTTCGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

329

Amino Acids

35.43

Weight (kDa)

9.49

Isoelectric Point (pI)

64.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_Nup35	PF05172	182 - 267	1.2e-35	Nup53/35/40-type RNA recognition motif
Nup35_RRM_2	PF14605	187 - 239	3.6e-08	Nup53/35/40-type RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16310
fragaria_vesca	FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170
malus_domestica	MD09G1205800.v1.1 MD17G1186700.v1.1
prunus_persica	Prupe.3G061200_v2.0.a1
pyrus_communis	pycom09g12250 pycom17g19560
rosa_chinensis	RchiOBHm_Chr2g0140061
rosa_laevigata	RLG00000019845
rosa_multiflora	Rmu_co8305803.1_g000001 Rmu_sc0003365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105090
rosa_rugosa	Rorug02G0360900
rosa_samantha	Rh2AG411500 Rh2BG421800 Rh2CG397600 Rh2DG431200
rosa_wichuraiana	Rw2G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AccB7I	CCANNNNNTGG	1 cut(s)	923
AccI	GTMKAC	2 cut(s)	179, 771
AciI	CCGC	3 cut(s)	119, 488, 491
AclWI	GGATC	2 cut(s)	160, 448
AcsI	RAATTY	3 cut(s)	92, 142, 598
AfaI	GTAC	3 cut(s)	415, 606, 884
AfeI	AGCGCT	1 cut(s)	901
AfiI	CCNNNNNNNGG	6 cut(s)	32, 215, 308, 452, 553, 923
AflIII	ACRYGT	1 cut(s)	643
AgeI	ACCGGT	2 cut(s)	192, 693
AgsI	TTSAA	3 cut(s)	56, 620, 640
AjnI	CCWGG	4 cut(s)	301, 466, 586, 649
AluBI	AGCT	2 cut(s)	65, 116
AluI	AGCT	2 cut(s)	65, 116
Alw26I	GTCTC	4 cut(s)	243, 796, 876, 961
AlwI	GGATC	2 cut(s)	160, 448
Ama87I	CYCGRG	1 cut(s)	97
Aor51HI	AGCGCT	1 cut(s)	901
AoxI	GGCC	2 cut(s)	509, 933
ApeKI	GCWGC	5 cut(s)	8, 11, 113, 116, 897
ApoI	RAATTY	3 cut(s)	92, 142, 598
ArsI	GACNNNNNNTTYG	1 cut(s)	962
AsiGI	ACCGGT	2 cut(s)	192, 693
AspLEI	GCGC	3 cut(s)	715, 902, 929
AspS9I	GGNCC	2 cut(s)	195, 653
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	602
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	2 cut(s)	195, 653
BbvI	GCAGC	4 cut(s)	23, 103, 125, 909
BccI	CCATC	1 cut(s)	847
BceAI	ACGGC	1 cut(s)	910
BciT130I	CCWGG	4 cut(s)	303, 468, 588, 651
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	4 cut(s)	243, 796, 876, 961
BfaI	CTAG	2 cut(s)	507, 849
BfmI	CTRYAG	3 cut(s)	9, 447, 537
BfoI	RGCGCY	3 cut(s)	716, 903, 930
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	6 cut(s)	9, 12, 114, 117, 491, 898
BlsI	GCNGC	6 cut(s)	10, 13, 115, 118, 492, 899
BmcAI	AGTACT	2 cut(s)	606, 884
Bme1390I	CCNGG	5 cut(s)	105, 303, 468, 588, 651
Bme18I	GGWCC	2 cut(s)	195, 653
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	195, 653
BmrFI	CCNGG	5 cut(s)	105, 303, 468, 588, 651
BmsI	GCATC	3 cut(s)	235, 663, 691
BoxI	GACNNNNGTC	1 cut(s)	868
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
BpmI	CTGGAG	2 cut(s)	225, 570
BpuMI	CCSGG	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	677
BsaI	GGTCTC	1 cut(s)	961
BsaJI	CCNNGG	1 cut(s)	814
BsaWI	WCCGGW	2 cut(s)	192, 693
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 215, 308, 452, 553, 923
Bse118I	RCCGGY	2 cut(s)	192, 693
Bse1I	ACTGG	2 cut(s)	674, 767
Bse8I	GATNNNNATC	1 cut(s)	677
BseBI	CCWGG	4 cut(s)	303, 468, 588, 651
BseDI	CCNNGG	1 cut(s)	814
BseGI	GGATG	6 cut(s)	193, 430, 678, 678, 735, 842
BseJI	GATNNNNATC	1 cut(s)	677
BseLI	CCNNNNNNNGG	6 cut(s)	32, 215, 308, 452, 553, 923
BseMII	CTCAG	2 cut(s)	201, 893
BseNI	ACTGG	2 cut(s)	674, 767
BseRI	GAGGAG	1 cut(s)	900
BseXI	GCAGC	4 cut(s)	23, 103, 125, 909
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	511, 935
BshTI	ACCGGT	2 cut(s)	192, 693
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	104, 193, 694
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	6 cut(s)	32, 215, 308, 452, 553, 923
BsmAI	GTCTC	4 cut(s)	243, 796, 876, 961
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	511, 935
Bso31I	GGTCTC	1 cut(s)	961
BsoBI	CYCGRG	1 cut(s)	97
Bsp143I	GATC	3 cut(s)	152, 157, 440
BspACI	CCGC	3 cut(s)	119, 488, 491
BspANI	GGCC	2 cut(s)	511, 935
BspCNI	CTCAG	2 cut(s)	202, 892
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	160, 448
BspTNI	GGTCTC	1 cut(s)	961
BsrFI	RCCGGY	2 cut(s)	192, 693
BsrI	ACTGG	2 cut(s)	674, 767
BssAI	RCCGGY	2 cut(s)	192, 693
BssECI	CCNNGG	1 cut(s)	814
BssMI	GATC	3 cut(s)	152, 157, 440
BssNAI	GTATAC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	814
Bst1107I	GTATAC	1 cut(s)	180
Bst2UI	CCWGG	4 cut(s)	303, 468, 588, 651
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	2 cut(s)	489, 552
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	325, 789
BstDEI	CTNAG	3 cut(s)	210, 249, 879
BstENI	CCTNNNNNAGG	4 cut(s)	30, 306, 450, 551
BstF5I	GGATG	6 cut(s)	193, 430, 678, 678, 735, 842
BstH2I	RGCGCY	3 cut(s)	716, 903, 930
BstHHI	GCGC	3 cut(s)	715, 902, 929
BstKTI	GATC	3 cut(s)	155, 160, 443
BstMAI	GTCTC	4 cut(s)	243, 796, 876, 961
BstMBI	GATC	3 cut(s)	152, 157, 440
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 125, 710
BstNI	CCWGG	4 cut(s)	303, 468, 588, 651
BstNSI	RCATGY	1 cut(s)	647
BstPAI	GACNNNNGTC	1 cut(s)	868
BstSCI	CCNGG	5 cut(s)	103, 301, 466, 586, 649
BstSFI	CTRYAG	3 cut(s)	9, 447, 537
BstV1I	GCAGC	4 cut(s)	23, 103, 125, 909
BstX2I	RGATCY	2 cut(s)	152, 440
BstXI	CCANNNNNNTGG	1 cut(s)	281
BstYI	RGATCY	2 cut(s)	152, 440
BstZ17I	GTATAC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	511, 935
BtsCI	GGATG	6 cut(s)	193, 430, 678, 678, 735, 842
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	2 cut(s)	567, 855
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	325, 789
CfoI	GCGC	3 cut(s)	715, 902, 929
Cfr10I	RCCGGY	2 cut(s)	192, 693
Cfr13I	GGNCC	2 cut(s)	195, 653
CpoI	CGGWCCG	1 cut(s)	195
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	414, 605, 883
CspAI	ACCGGT	2 cut(s)	192, 693
CspI	CGGWCCG	1 cut(s)	195
CviAII	CATG	2 cut(s)	644, 823
CviJI	RGCY	7 cut(s)	65, 116, 327, 466, 511, 766, 935
CviKI_1	RGCY	7 cut(s)	65, 116, 327, 466, 511, 766, 935
CviQI	GTAC	3 cut(s)	414, 605, 883
DdeI	CTNAG	3 cut(s)	210, 249, 879
DpnI	GATC	3 cut(s)	154, 159, 442
DpnII	GATC	3 cut(s)	152, 157, 440
Eam1104I	CTCTTC	2 cut(s)	489, 552
EarI	CTCTTC	2 cut(s)	489, 552
EciI	GGCGGA	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	814
Eco31I	GGTCTC	1 cut(s)	961
Eco47I	GGWCC	2 cut(s)	195, 653
Eco47III	AGCGCT	1 cut(s)	901
Eco88I	CYCGRG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	4 cut(s)	30, 306, 450, 551
EcoRII	CCWGG	4 cut(s)	301, 466, 586, 649
EcoT14I	CCWWGG	1 cut(s)	814
ErhI	CCWWGG	1 cut(s)	814
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	2 cut(s)	647, 826
FaiI	YATR	9 cut(s)	133, 180, 533, 576, 632, 645, 708, 824, 932
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	2 cut(s)	643, 822
FblI	GTMKAC	2 cut(s)	179, 771
Fnu4HI	GCNGC	6 cut(s)	9, 12, 114, 117, 491, 898
FokI	GGATG	6 cut(s)	200, 437, 665, 685, 742, 829
Fsp4HI	GCNGC	6 cut(s)	9, 12, 114, 117, 491, 898
FspBI	CTAG	2 cut(s)	507, 849
GlaI	GCGC	3 cut(s)	714, 901, 928
GluI	GCNGC	6 cut(s)	9, 12, 114, 117, 491, 898
GsuI	CTGGAG	2 cut(s)	225, 570
HaeII	RGCGCY	3 cut(s)	716, 903, 930
HaeIII	GGCC	2 cut(s)	511, 935
HapII	CCGG	3 cut(s)	104, 193, 694
HgaI	GACGC	1 cut(s)	225
HhaI	GCGC	3 cut(s)	715, 902, 929
Hin1II	CATG	2 cut(s)	647, 826
Hin6I	GCGC	3 cut(s)	713, 900, 927
HinP1I	GCGC	3 cut(s)	713, 900, 927
HinfI	GANTC	7 cut(s)	22, 100, 212, 358, 376, 804, 819
HpaII	CCGG	3 cut(s)	104, 193, 694
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	180, 772
Hpy188I	TCNGA	7 cut(s)	149, 157, 199, 256, 381, 522, 700
Hpy188III	TCNNGA	7 cut(s)	56, 97, 209, 242, 274, 282, 637
Hpy8I	GTNNAC	2 cut(s)	180, 772
HpyAV	CCTTC	3 cut(s)	339, 430, 446
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	8 cut(s)	11, 128, 224, 350, 473, 676, 704, 889
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 125, 710
HpyF3I	CTNAG	3 cut(s)	210, 249, 879
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	647, 826
HspAI	GCGC	3 cut(s)	713, 900, 927
Kzo9I	GATC	3 cut(s)	152, 157, 440
Lsp1109I	GCAGC	4 cut(s)	23, 103, 125, 909
LweI	GCATC	3 cut(s)	235, 663, 691
MaeI	CTAG	2 cut(s)	507, 849
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	3 cut(s)	295, 478, 565
MalI	GATC	3 cut(s)	154, 159, 442
MboI	GATC	3 cut(s)	152, 157, 440
MboII	GAAGA	4 cut(s)	152, 273, 476, 569
MflI	RGATCY	2 cut(s)	152, 440
MluCI	AATT	3 cut(s)	92, 142, 598
MlyI	GAGTC	6 cut(s)	16, 109, 221, 367, 385, 798
MmeI	TCCRAC	1 cut(s)	297
MseI	TTAA	2 cut(s)	794, 988
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	104, 193, 694
MspR9I	CCNGG	5 cut(s)	105, 303, 468, 588, 651
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	4 cut(s)	303, 468, 588, 651
MwoI	GCNNNNNNNGC	3 cut(s)	46, 125, 710
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	3 cut(s)	152, 157, 440
NlaIII	CATG	2 cut(s)	647, 826
NmuCI	GTSAC	2 cut(s)	478, 565
NspI	RCATGY	1 cut(s)	647
PaeR7I	CTCGAG	1 cut(s)	97
PciI	ACATGT	1 cut(s)	643
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	819
PflMI	CCANNNNNTGG	1 cut(s)	923
PfoI	TCCNGGA	1 cut(s)	103
PinAI	ACCGGT	2 cut(s)	192, 693
PkrI	GCNGC	6 cut(s)	10, 13, 115, 118, 492, 899
PleI	GAGTC	6 cut(s)	16, 108, 220, 366, 384, 798
PpsI	GAGTC	6 cut(s)	16, 108, 220, 366, 384, 798
Ppu21I	YACGTR	1 cut(s)	83
PscI	ACATGT	1 cut(s)	643
PshAI	GACNNNNGTC	1 cut(s)	868
Psp6I	CCWGG	4 cut(s)	301, 466, 586, 649
PspGI	CCWGG	4 cut(s)	301, 466, 586, 649
PspPI	GGNCC	2 cut(s)	195, 653
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	152, 440
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	3 cut(s)	415, 606, 884
RsaNI	GTAC	3 cut(s)	414, 605, 883
Rsr2I	CGGWCCG	1 cut(s)	195
RsrII	CGGWCCG	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	794, 988
SatI	GCNGC	6 cut(s)	9, 12, 114, 117, 491, 898
Sau3AI	GATC	3 cut(s)	152, 157, 440
Sau96I	GGNCC	2 cut(s)	195, 653
ScaI	AGTACT	2 cut(s)	606, 884
SchI	GAGTC	6 cut(s)	16, 109, 221, 367, 385, 798
ScrFI	CCNGG	5 cut(s)	105, 303, 468, 588, 651
SfaNI	GCATC	3 cut(s)	235, 663, 691
SfcI	CTRYAG	3 cut(s)	9, 447, 537
Sfr274I	CTCGAG	1 cut(s)	97
SinI	GGWCC	2 cut(s)	195, 653
SlaI	CTCGAG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	3 cut(s)	92, 142, 598
SsiI	CCGC	3 cut(s)	119, 488, 491
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	2 cut(s)	507, 849
StyD4I	CCNGG	5 cut(s)	103, 301, 466, 586, 649
StyI	CCWWGG	1 cut(s)	814
TaaI	ACNGT	1 cut(s)	571
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	98, 862
TasI	AATT	3 cut(s)	92, 142, 598
TatI	WGTACW	2 cut(s)	604, 882
TauI	GCSGC	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	819
Tru1I	TTAA	2 cut(s)	794, 988
Tru9I	TTAA	2 cut(s)	794, 988
TscAI	CASTG	2 cut(s)	574, 862
TseFI	GTSAC	2 cut(s)	478, 565
TseI	GCWGC	5 cut(s)	8, 11, 113, 116, 897
Tsp45I	GTSAC	2 cut(s)	478, 565
TspDTI	ATGAA	1 cut(s)	811
TspGWI	ACGGA	2 cut(s)	756, 930
TspRI	CASTG	2 cut(s)	574, 862
Van91I	CCANNNNNTGG	1 cut(s)	923
VpaK11BI	GGWCC	2 cut(s)	195, 653
XagI	CCTNNNNNAGG	4 cut(s)	30, 306, 450, 551
XapI	RAATTY	3 cut(s)	92, 142, 598
XceI	RCATGY	1 cut(s)	647
XhoI	CTCGAG	1 cut(s)	97
XmiI	GTMKAC	2 cut(s)	179, 771
XspI	CTAG	2 cut(s)	507, 849
ZrmI	AGTACT	2 cut(s)	606, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.