Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007458

Physical Location & Seq

Genomic Coordinates Forward (+)

19658131 .. 19661853

Gene Structure 3723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1205800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAGCACCACAGTACATAGAACTCCCAAATCTGGTAGGCAGTCATTGTTTTTCCAAGATTTAGCTTCACCCGTATCGTCCCGGAGAGGAAAATTTTCTACTCCAGGCCAGGCAGCTGCAGTCTCTGCTCTATGGCGCGAGAGCGGTGGGGGATCGGACCTTCCACCACCTCCGCTTTACACGTTGGAAGACCGCTCGGACTTCTCCCCTGAATCTGGAATTCCAGATTACCCAGTATCCCCCGAAATCAAGTCGGATCCTAGAACCCCGGTTCACAGTTTTGGGCGTGATTCCTCGACTCCGGTGAAGGGAAAATCAGAGGCAAGCACTTCGTATGCTCTATCAAATGGACACCATGCCCAACAAGTTTCAGCAAGTATGAGTTGGTGGTCACCCTCAAAGAGTGGTGGTGAGCAAGAAGAGAAGGGAAAGAGTTCACCAGTTGAGGGTGTTGTTCAGCCTCTTGCTCTGATCACTCTTCCACCTCCAAGGGAAGTTGCAAGGCCAGAGATGCAAAGGAATACATTGCCTACAGCAAACCTCAATGAAGAAGAATGGGTTACTGTTTATGGATTTTCTCCAGCTGATACAAATTTAGTCTTACGAGAGTTTGAAAAATGTGGTGTGATTTTGAAACATGTTCCCGGTCCAAGAGATGCCAACTGGATGCACATTTTATACCAGAGTTACTCTGATGCTCAGAAGGCTCTCAGCAAGAATGGGACGCAAATTAATGGGGCACTAATTATAGGTGTGAAGCCGTTGGATCCAATGCAACGCCATGCATTAAATGAAAGGGTCACCAATCAGGGTTTCATGACATTTCCCCCTCAGCCATCAATGAAACACGCAGAGCTGAATGCTTCAAGAGCTCCCTCCCGTCCTTACTATCTGCTAAACAATAATACCAGTGCGCAGAAATCTGGAGGTGCAATTGCTTCCCCAACAAAGTCATTGGTCTCCAAAGTCATGGATTTAATGTTTGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

331

Amino Acids

35.85

Weight (kDa)

9.04

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_Nup35	PF05172	180 - 265	3.7e-31	Nup53/35/40-type RNA recognition motif
Nup35_RRM_2	PF14605	185 - 237	6.2e-08	Nup53/35/40-type RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16310
fragaria_vesca	FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170
malus_domestica	MD09G1205800.v1.1 MD17G1186700.v1.1
prunus_persica	Prupe.3G061200_v2.0.a1
pyrus_communis	pycom09g12250 pycom17g19560
rosa_chinensis	RchiOBHm_Chr2g0140061
rosa_laevigata	RLG00000019845
rosa_multiflora	Rmu_co8305803.1_g000001 Rmu_sc0003365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105090
rosa_rugosa	Rorug02G0360900
rosa_samantha	Rh2AG411500 Rh2BG421800 Rh2CG397600 Rh2DG431200
rosa_wichuraiana	Rw2G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	915
AccBSI	CCGCTC	2 cut(s)	144, 195
AccII	CGCG	1 cut(s)	138
AciI	CCGC	3 cut(s)	144, 173, 193
AclWI	GGATC	5 cut(s)	160, 251, 264, 761, 774
AcsI	RAATTY	3 cut(s)	92, 219, 592
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	4 cut(s)	32, 215, 308, 446
AflIII	ACRYGT	2 cut(s)	180, 637
AgsI	TTSAA	3 cut(s)	614, 634, 867
AjnI	CCWGG	2 cut(s)	103, 108
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
AluBI	AGCT	5 cut(s)	65, 116, 584, 856, 872
AluI	AGCT	5 cut(s)	65, 116, 584, 856, 872
Alw21I	GWGCWC	2 cut(s)	8, 874
Alw26I	GTCTC	2 cut(s)	127, 964
AlwI	GGATC	5 cut(s)	160, 251, 264, 761, 774
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	106, 503
ApeKI	GCWGC	2 cut(s)	113, 116
ApoI	RAATTY	3 cut(s)	92, 219, 592
AseI	ATTAAT	1 cut(s)	732
Asp700I	GAANNNNTTC	2 cut(s)	94, 433
AspLEI	GCGC	2 cut(s)	138, 916
AspS9I	GGNCC	2 cut(s)	157, 647
AsuC2I	CCSGG	3 cut(s)	82, 269, 645
AsuHPI	GGTGA	6 cut(s)	60, 316, 384, 422, 429, 793
AvaII	GGWCC	2 cut(s)	157, 647
BaeGI	GKGCMC	1 cut(s)	742
BamHI	GGATCC	2 cut(s)	256, 766
BanII	GRGCYC	1 cut(s)	874
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	8, 874
BbvCI	CCTCAGC	1 cut(s)	831
BbvI	GCAGC	2 cut(s)	103, 125
BccI	CCATC	1 cut(s)	844
BceAI	ACGGC	1 cut(s)	745
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BciT130I	CCWGG	2 cut(s)	105, 110
BciVI	GTATCC	1 cut(s)	247
BclI	TGATCA	1 cut(s)	471
BcnI	CCSGG	3 cut(s)	82, 269, 645
BcoDI	GTCTC	2 cut(s)	127, 964
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	2 cut(s)	117, 531
BfuI	GTATCC	1 cut(s)	247
BisI	GCNGC	2 cut(s)	114, 117
BlsI	GCNGC	2 cut(s)	115, 118
Bme1390I	CCNGG	5 cut(s)	82, 105, 110, 269, 645
Bme18I	GGWCC	2 cut(s)	157, 647
BmgT120I	GGNCC	2 cut(s)	157, 647
BmiI	GGNNCC	2 cut(s)	258, 768
BmrFI	CCNGG	5 cut(s)	82, 105, 110, 269, 645
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	4 cut(s)	501, 646, 657, 685
BmuI	ACTGGG	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	3 cut(s)	87, 564, 945
Bpu10I	CCTNAGC	1 cut(s)	831
BpuMI	CCSGG	3 cut(s)	82, 269, 645
BsaI	GGTCTC	1 cut(s)	964
BsaJI	CCNNGG	2 cut(s)	267, 488
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 215, 308, 446
Bse1I	ACTGG	4 cut(s)	233, 440, 668, 909
Bse3DI	GCAATG	1 cut(s)	524
BseBI	CCWGG	2 cut(s)	105, 110
BseDI	CCNNGG	2 cut(s)	267, 488
BseGI	GGATG	1 cut(s)	672
BseLI	CCNNNNNNNGG	4 cut(s)	32, 215, 308, 446
BseMI	GCAATG	1 cut(s)	524
BseMII	CTCAG	3 cut(s)	713, 724, 845
BseNI	ACTGG	4 cut(s)	233, 440, 668, 909
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	2 cut(s)	103, 125
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	108, 505
BsiHKAI	GWGCWC	2 cut(s)	8, 874
BsiSI	CCGG	4 cut(s)	82, 269, 302, 645
BslFI	GGGAC	2 cut(s)	64, 736
BslI	CCNNNNNNNGG	4 cut(s)	32, 215, 308, 446
BsmAI	GTCTC	2 cut(s)	127, 964
BsmFI	GGGAC	2 cut(s)	64, 736
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	2 cut(s)	108, 505
Bso31I	GGTCTC	1 cut(s)	964
Bsp1286I	GDGCHC	3 cut(s)	8, 742, 874
Bsp143I	GATC	4 cut(s)	152, 256, 471, 766
BspACI	CCGC	3 cut(s)	144, 173, 193
BspANI	GGCC	2 cut(s)	108, 505
BspCNI	CTCAG	3 cut(s)	712, 723, 844
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	816
BspLI	GGNNCC	2 cut(s)	258, 768
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	5 cut(s)	160, 251, 264, 761, 774
BspTNI	GGTCTC	1 cut(s)	964
BsrBI	CCGCTC	2 cut(s)	144, 195
BsrDI	GCAATG	1 cut(s)	524
BsrI	ACTGG	4 cut(s)	233, 440, 668, 909
BssECI	CCNNGG	2 cut(s)	267, 488
BssMI	GATC	4 cut(s)	152, 256, 471, 766
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	2 cut(s)	105, 110
Bst4CI	ACNGT	3 cut(s)	13, 278, 565
Bst6I	CTCTTC	2 cut(s)	414, 483
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	699, 710, 831
BstEII	GGTNACC	2 cut(s)	390, 799
BstF5I	GGATG	1 cut(s)	672
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	138, 916
BstKTI	GATC	4 cut(s)	155, 259, 474, 769
BstMAI	GTCTC	2 cut(s)	127, 964
BstMBI	GATC	4 cut(s)	152, 256, 471, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 511, 704, 869
BstNI	CCWGG	2 cut(s)	105, 110
BstNSI	RCATGY	1 cut(s)	641
BstPI	GGTNACC	2 cut(s)	390, 799
BstSCI	CCNGG	5 cut(s)	80, 103, 108, 267, 643
BstSFI	CTRYAG	2 cut(s)	117, 531
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	103, 125
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	2 cut(s)	256, 766
BstXI	CCANNNNNNTGG	1 cut(s)	970
BstYI	RGATCY	2 cut(s)	256, 766
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	108, 505
BtsCI	GGATG	1 cut(s)	672
BtsIMutI	CAGTG	1 cut(s)	916
Cac8I	GCNNGC	1 cut(s)	325
CaiI	CAGNNNCTG	1 cut(s)	125
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	2 cut(s)	138, 916
Cfr13I	GGNCC	2 cut(s)	157, 647
CseI	GACGC	1 cut(s)	733
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	5 cut(s)	356, 638, 782, 817, 970
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	3 cut(s)	699, 710, 831
DpnI	GATC	4 cut(s)	154, 258, 473, 768
DpnII	GATC	4 cut(s)	152, 256, 471, 766
Eam1104I	CTCTTC	2 cut(s)	414, 483
EarI	CTCTTC	2 cut(s)	414, 483
Ecl136II	GAGCTC	1 cut(s)	872
Eco130I	CCWWGG	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	874
Eco31I	GGTCTC	1 cut(s)	964
Eco47I	GGWCC	2 cut(s)	157, 647
Eco53kI	GAGCTC	1 cut(s)	872
Eco91I	GGTNACC	2 cut(s)	390, 799
EcoICRI	GAGCTC	1 cut(s)	872
EcoO65I	GGTNACC	2 cut(s)	390, 799
EcoRI	GAATTC	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	103, 108
EcoT14I	CCWWGG	1 cut(s)	488
EcoT22I	ATGCAT	1 cut(s)	787
EcoT38I	GRGCYC	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	5 cut(s)	359, 641, 785, 820, 973
FaqI	GGGAC	2 cut(s)	64, 736
FatI	CATG	5 cut(s)	355, 637, 781, 816, 969
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	114, 117
FokI	GGATG	1 cut(s)	679
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	2 cut(s)	114, 117
FspBI	CTAG	1 cut(s)	261
FspI	TGCGCA	1 cut(s)	915
GlaI	GCGC	2 cut(s)	137, 915
GluI	GCNGC	2 cut(s)	114, 117
GsuI	CTGGAG	3 cut(s)	87, 564, 945
HaeIII	GGCC	2 cut(s)	108, 505
HapII	CCGG	4 cut(s)	82, 269, 302, 645
HgaI	GACGC	1 cut(s)	733
HhaI	GCGC	2 cut(s)	138, 916
Hin1II	CATG	5 cut(s)	359, 641, 785, 820, 973
Hin6I	GCGC	2 cut(s)	136, 914
HinP1I	GCGC	2 cut(s)	136, 914
HinfI	GANTC	3 cut(s)	212, 290, 298
HpaII	CCGG	4 cut(s)	82, 269, 302, 645
HphI	GGTGA	6 cut(s)	60, 316, 384, 422, 429, 793
Hpy166II	GTNNAC	2 cut(s)	274, 437
Hpy188I	TCNGA	7 cut(s)	157, 199, 256, 319, 471, 694, 702
Hpy188III	TCNNGA	5 cut(s)	216, 224, 817, 867, 924
Hpy8I	GTNNAC	2 cut(s)	274, 437
HpyAV	CCTTC	4 cut(s)	170, 301, 418, 697
HpyCH4III	ACNGT	3 cut(s)	13, 278, 565
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	7 cut(s)	119, 500, 514, 670, 775, 785, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 511, 704, 869
HpyF3I	CTNAG	3 cut(s)	699, 710, 831
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	5 cut(s)	359, 641, 785, 820, 973
HspAI	GCGC	2 cut(s)	136, 914
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	4 cut(s)	152, 256, 471, 766
LmnI	GCTCC	1 cut(s)	877
Lsp1109I	GCAGC	2 cut(s)	103, 125
LweI	GCATC	4 cut(s)	501, 646, 657, 685
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	4 cut(s)	390, 559, 686, 799
MalI	GATC	4 cut(s)	154, 258, 473, 768
MbiI	CCGCTC	2 cut(s)	144, 195
MboI	GATC	4 cut(s)	152, 256, 471, 766
MboII	GAAGA	5 cut(s)	200, 431, 470, 560, 563
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	2 cut(s)	256, 766
MhlI	GDGCHC	3 cut(s)	8, 742, 874
MluCI	AATT	6 cut(s)	92, 219, 592, 729, 744, 933
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	3 cut(s)	165, 234, 744
Mph1103I	ATGCAT	1 cut(s)	787
MroXI	GAANNNNTTC	2 cut(s)	94, 433
MseI	TTAA	4 cut(s)	732, 788, 977, 991
MspA1I	CMGCKG	2 cut(s)	116, 584
MspI	CCGG	4 cut(s)	82, 269, 302, 645
MspR9I	CCNGG	5 cut(s)	82, 105, 110, 269, 645
MunI	CAATTG	1 cut(s)	933
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	2 cut(s)	105, 110
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	4 cut(s)	125, 511, 704, 869
NciI	CCSGG	3 cut(s)	82, 269, 645
NdeII	GATC	4 cut(s)	152, 256, 471, 766
NlaIII	CATG	5 cut(s)	359, 641, 785, 820, 973
NlaIV	GGNNCC	2 cut(s)	258, 768
NmuCI	GTSAC	2 cut(s)	390, 799
NsbI	TGCGCA	1 cut(s)	915
NsiI	ATGCAT	1 cut(s)	787
NspI	RCATGY	1 cut(s)	641
PagI	TCATGA	1 cut(s)	816
PciI	ACATGT	1 cut(s)	637
PctI	GAATGC	1 cut(s)	865
PdmI	GAANNNNTTC	2 cut(s)	94, 433
PfeI	GAWTC	2 cut(s)	212, 290
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	115, 118
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PscI	ACATGT	1 cut(s)	637
PshBI	ATTAAT	1 cut(s)	732
Psp124BI	GAGCTC	1 cut(s)	874
Psp6I	CCWGG	2 cut(s)	103, 108
PspEI	GGTNACC	2 cut(s)	390, 799
PspGI	CCWGG	2 cut(s)	103, 108
PspN4I	GGNNCC	2 cut(s)	258, 768
PspPI	GGNCC	2 cut(s)	157, 647
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	256, 766
PvuII	CAGCTG	2 cut(s)	116, 584
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	874
SaqAI	TTAA	4 cut(s)	732, 788, 977, 991
SatI	GCNGC	2 cut(s)	114, 117
Sau3AI	GATC	4 cut(s)	152, 256, 471, 766
Sau96I	GGNCC	2 cut(s)	157, 647
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	5 cut(s)	82, 105, 110, 269, 645
SduI	GDGCHC	3 cut(s)	8, 742, 874
SfaNI	GCATC	4 cut(s)	501, 646, 657, 685
SfcI	CTRYAG	2 cut(s)	117, 531
SinI	GGWCC	2 cut(s)	157, 647
Sse9I	AATT	6 cut(s)	92, 219, 592, 729, 744, 933
SsiI	CCGC	3 cut(s)	144, 173, 193
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	874
StyD4I	CCNGG	5 cut(s)	80, 103, 108, 267, 643
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	3 cut(s)	13, 278, 565
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	296
TasI	AATT	6 cut(s)	92, 219, 592, 729, 744, 933
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	212, 290
Tru1I	TTAA	4 cut(s)	732, 788, 977, 991
Tru9I	TTAA	4 cut(s)	732, 788, 977, 991
TscAI	CASTG	1 cut(s)	916
TseFI	GTSAC	2 cut(s)	390, 799
TseI	GCWGC	2 cut(s)	113, 116
Tsp45I	GTSAC	2 cut(s)	390, 799
TspDTI	ATGAA	4 cut(s)	561, 805, 807, 857
TspRI	CASTG	1 cut(s)	916
VpaK11BI	GGWCC	2 cut(s)	157, 647
VspI	ATTAAT	1 cut(s)	732
XapI	RAATTY	3 cut(s)	92, 219, 592
XceI	RCATGY	1 cut(s)	641
XmnI	GAANNNNTTC	2 cut(s)	94, 433
XspI	CTAG	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.