Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007458

Physical Location & Seq

Genomic Coordinates Forward (+)

17497405 .. 17497887

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGCACCACAGTACATAGAACTCCCAAATCCAGTAGGCAGTCATTGTTTTTCCAAGATTTAGCTTCACCTGTATCGTCCAGGAGAGGAAAAAATTCAACTCCAGGCCAGGCAGCTGCGGTCTCTACTCTATGGCGCGAGAGTGGTGGAGGATCGAACCTTCCACCACCTCCGCTTTACACGTTGGAAGACCGCTTGGACTTCTCCCCTGAATCCGGAATTCCGGATTACCCATTATCCCCAGAAATCAAGTCGGATCCTAGAACTCCGGTGCACAGTTTTGGACGTGATTCCTTGACTCCAGTGAAGGGAAAATCAGAGGCAAGCACTTCGTATGCTCTATCAAATGGACAGCATGGCCAACAGGGTTCGGCGAGTATGAGTTGGTGGTCACCCTCGAAGAGTGGTGGTGAGCAAGAAGAGAAGGGAAAGAATTCACCAGTGGAGGGTGTTGTTCAGCCTCTTGCTCTGATCGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

161

Amino Acids

17.09

Weight (kDa)

6.84

Isoelectric Point (pI)

66.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16310
fragaria_vesca	FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170
malus_domestica	MD09G1205800.v1.1 MD17G1186700.v1.1
prunus_persica	Prupe.3G061200_v2.0.a1
pyrus_communis	pycom09g12250 pycom17g19560
rosa_chinensis	RchiOBHm_Chr2g0140061
rosa_laevigata	RLG00000019845
rosa_multiflora	Rmu_co8305803.1_g000001 Rmu_sc0003365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105090
rosa_rugosa	Rorug02G0360900
rosa_samantha	Rh2AG411500 Rh2BG421800 Rh2CG397600 Rh2DG431200
rosa_wichuraiana	Rw2G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	138
AccIII	TCCGGA	2 cut(s)	215, 223
AciI	CCGC	3 cut(s)	119, 173, 193
AclWI	GGATC	3 cut(s)	160, 251, 264
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	3 cut(s)	94, 219, 433
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	3 cut(s)	215, 308, 446
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	99
AjiI	CACGTC	1 cut(s)	287
AjnI	CCWGG	3 cut(s)	80, 103, 108
AluBI	AGCT	2 cut(s)	65, 116
AluI	AGCT	2 cut(s)	65, 116
Alw21I	GWGCWC	2 cut(s)	8, 276
Alw26I	GTCTC	1 cut(s)	127
Alw44I	GTGCAC	1 cut(s)	272
AlwI	GGATC	3 cut(s)	160, 251, 264
Aor13HI	TCCGGA	2 cut(s)	215, 223
AoxI	GGCC	2 cut(s)	106, 358
ApaLI	GTGCAC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	113, 116
ApoI	RAATTY	3 cut(s)	94, 219, 433
Asp700I	GAANNNNTTC	2 cut(s)	94, 433
AspLEI	GCGC	1 cut(s)	138
AsuHPI	GGTGA	4 cut(s)	60, 384, 422, 429
BaeGI	GKGCMC	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	360
BamHI	GGATCC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	8, 276
BbvI	GCAGC	2 cut(s)	103, 125
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BciT130I	CCWGG	3 cut(s)	82, 105, 110
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	261
BisI	GCNGC	2 cut(s)	114, 117
BlsI	GCNGC	2 cut(s)	115, 118
Bme1390I	CCNGG	3 cut(s)	82, 105, 110
BmgBI	CACGTC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	3 cut(s)	82, 105, 110
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	2 cut(s)	87, 285
Bsa29I	ATCGAT	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	127
BsaWI	WCCGGW	3 cut(s)	215, 223, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 308, 446
Bse1I	ACTGG	3 cut(s)	33, 302, 440
BseAI	TCCGGA	2 cut(s)	215, 223
BseBI	CCWGG	3 cut(s)	82, 105, 110
BseCI	ATCGAT	1 cut(s)	474
BseLI	CCNNNNNNNGG	3 cut(s)	215, 308, 446
BseNI	ACTGG	3 cut(s)	33, 302, 440
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	103, 125
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	108, 360
BshVI	ATCGAT	1 cut(s)	474
BsiHKAI	GWGCWC	2 cut(s)	8, 276
BsiSI	CCGG	3 cut(s)	216, 224, 269
BslI	CCNNNNNNNGG	3 cut(s)	215, 308, 446
BsmAI	GTCTC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	108, 360
Bso31I	GGTCTC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	8, 276
Bsp13I	TCCGGA	2 cut(s)	215, 223
Bsp143I	GATC	4 cut(s)	152, 256, 471, 475
BspACI	CCGC	3 cut(s)	119, 173, 193
BspANI	GGCC	2 cut(s)	108, 360
BspDI	ATCGAT	1 cut(s)	474
BspEI	TCCGGA	2 cut(s)	215, 223
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	3 cut(s)	160, 251, 264
BspTNI	GGTCTC	1 cut(s)	127
BsrI	ACTGG	3 cut(s)	33, 302, 440
BssMI	GATC	4 cut(s)	152, 256, 471, 475
Bst2UI	CCWGG	3 cut(s)	82, 105, 110
Bst4CI	ACNGT	2 cut(s)	13, 278
Bst6I	CTCTTC	2 cut(s)	395, 414
BstC8I	GCNNGC	1 cut(s)	325
BstEII	GGTNACC	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	4 cut(s)	155, 259, 474, 478
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	4 cut(s)	152, 256, 471, 475
BstNI	CCWGG	3 cut(s)	82, 105, 110
BstPI	GGTNACC	1 cut(s)	390
BstSCI	CCNGG	3 cut(s)	80, 103, 108
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	103, 125
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	108, 360
BsuTUI	ATCGAT	1 cut(s)	474
BtrI	CACGTC	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	309, 447
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	1 cut(s)	138
ClaI	ATCGAT	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	5 cut(s)	65, 108, 116, 360, 460
CviKI_1	RGCY	5 cut(s)	65, 108, 116, 360, 460
CviQI	GTAC	1 cut(s)	14
DpnI	GATC	4 cut(s)	154, 258, 473, 477
DpnII	GATC	4 cut(s)	152, 256, 471, 475
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	2 cut(s)	395, 414
EarI	CTCTTC	2 cut(s)	395, 414
Eco31I	GGTCTC	1 cut(s)	127
Eco91I	GGTNACC	1 cut(s)	390
EcoO65I	GGTNACC	1 cut(s)	390
EcoRI	GAATTC	2 cut(s)	219, 433
EcoRII	CCWGG	3 cut(s)	80, 103, 108
FaeI	CATG	1 cut(s)	359
FaiI	YATR	5 cut(s)	18, 133, 336, 357, 380
FatI	CATG	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	114, 117
Fsp4HI	GCNGC	2 cut(s)	114, 117
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	114, 117
GsuI	CTGGAG	2 cut(s)	87, 285
HaeIII	GGCC	2 cut(s)	108, 360
HapII	CCGG	3 cut(s)	216, 224, 269
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	212, 290, 298
HpaII	CCGG	3 cut(s)	216, 224, 269
HphI	GGTGA	4 cut(s)	60, 384, 422, 429
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	3 cut(s)	256, 319, 471
Hpy188III	TCNNGA	2 cut(s)	216, 224
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	3 cut(s)	170, 301, 418
HpyCH4III	ACNGT	2 cut(s)	13, 278
HpyCH4IV	ACGT	2 cut(s)	182, 286
HpyCH4V	TGCA	1 cut(s)	274
HpySE526I	ACGT	2 cut(s)	182, 286
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	1 cut(s)	136
Kpn2I	TCCGGA	2 cut(s)	215, 223
Kzo9I	GATC	4 cut(s)	152, 256, 471, 475
Lsp1109I	GCAGC	2 cut(s)	103, 125
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	2 cut(s)	182, 286
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	4 cut(s)	154, 258, 473, 477
MboI	GATC	4 cut(s)	152, 256, 471, 475
MboII	GAAGA	3 cut(s)	200, 412, 431
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	8, 276
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	3 cut(s)	94, 219, 433
MluNI	TGGCCA	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	2 cut(s)	165, 234
MnlI	CCTC	7 cut(s)	80, 143, 180, 313, 406, 439, 471
Mox20I	TGGCCA	1 cut(s)	360
MroI	TCCGGA	2 cut(s)	215, 223
MroXI	GAANNNNTTC	2 cut(s)	94, 433
MscI	TGGCCA	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	3 cut(s)	216, 224, 269
MspR9I	CCNGG	3 cut(s)	82, 105, 110
MvaI	CCWGG	3 cut(s)	82, 105, 110
MvnI	CGCG	1 cut(s)	138
NdeII	GATC	4 cut(s)	152, 256, 471, 475
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	390
PdmI	GAANNNNTTC	2 cut(s)	94, 433
PfeI	GAWTC	2 cut(s)	212, 290
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	115, 118
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp6I	CCWGG	3 cut(s)	80, 103, 108
PspEI	GGTNACC	1 cut(s)	390
PspGI	CCWGG	3 cut(s)	80, 103, 108
PspN4I	GGNNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SatI	GCNGC	2 cut(s)	114, 117
Sau3AI	GATC	4 cut(s)	152, 256, 471, 475
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	3 cut(s)	82, 105, 110
SduI	GDGCHC	2 cut(s)	8, 276
SetI	ASST	7 cut(s)	67, 73, 118, 162, 172, 185, 289
Sse9I	AATT	3 cut(s)	94, 219, 433
SsiI	CCGC	3 cut(s)	119, 173, 193
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	3 cut(s)	80, 103, 108
TaaI	ACNGT	2 cut(s)	13, 278
TaiI	ACGT	2 cut(s)	185, 289
TaqI	TCGA	3 cut(s)	155, 398, 474
TasI	AATT	3 cut(s)	94, 219, 433
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	212, 290
TscAI	CASTG	2 cut(s)	309, 447
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	2 cut(s)	113, 116
Tsp45I	GTSAC	1 cut(s)	390
TspRI	CASTG	2 cut(s)	309, 447
VneI	GTGCAC	1 cut(s)	272
XapI	RAATTY	3 cut(s)	94, 219, 433
XmnI	GAANNNNTTC	2 cut(s)	94, 433
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.