Prupe.3G061200_v2.0.a1

Nuclear pore complex protein NUP35

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
4388880 .. 4392517
3638 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G061200.1

Sequence Viewer

Length: 993 bp
ATGAGCACCACAGTACATAGAACTCCCAAATCTGGTAGGCAGTCATTGTTTTTCCAAGATATAACTTCGCCAGTCTCAGCCCGGAGAGGAACAATTTCAACTCCAGGCCAGGCAGCTGCAGTCTCTGCTCTATGGCGTGAGAGTGGTGGGGGATCAGATCTTCCACCTCCTCCGCTTTACACGTTGGAAGACCGCTCAGACTTTTCCCCTGAATCTGGAATTCCAGATTACCCTGTATCCCCGGAAATAAAATCAGATCCTAGAACTCCGGTCCACAGTTTTGGACGTGAGTCCTTGACTCCAGTAAAAAACAGATCAGAGGCAAGCACTTCTTATGCTCTATCAAGTGGACAGCATGGCCAACAGGGTTCAGCGAGTGTGAATTGGTGGTCATCCCCAAAGAGTGGTGGTGAGCAAGATGAGAAGGGAAGGAATTCACCAGTTGAGGGTGTTGTTCAGCCTGGTGCTCTGATCACTCTTCCACCTCCAAGGGAAGTTGCAAGGCCAGAGATGCAAAGGAATACCTTGCCTGCAGGGAACCTCAATGAGGAAGAATGGGTTACTGTTTATGGATTTTCTCCAGCTGATACGAATTTAGTTTTACGAGAGTTTGAAAAATGTGGCATGATTTTGAAACATGTTCCTGGTCCAAGAGATGCCAACTGGATGCACATCTTATATCAGAATTACTTTGATGCTCAGAAGGCTCTCAGCAAGAACGGGATGCAGATTAATGGGGCGCTAATTATAGGTGTGAAGCCACTGGATCCAATGCAACGCCATGCATTAAATGAAAGGATCAACAATCAGGGTTTCATGACATTGCTCCCCCAACCAGCCATGAAACATGCAGAACTGAATGCTTCAAGAGCCCCCCCTCGTTCTTACTATCTTCAAAATGGTAATACCAATGCGCGGCAATCCGGTGGTTCAATTGCTTCCCCAACAAAGTCAATGGCGTCCAAAGTCATGGATTTAATGTTTGGAGTTTAG

Protein Analysis

331

Amino Acids

35.93

Weight (kDa)

8.9

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 404
AccBSI CCGCTC 1 cut(s) 195
AccII CGCG 1 cut(s) 916
AciI CCGC 3 cut(s) 173, 193, 916
AclWI GGATC 5 cut(s) 160, 251, 761, 774, 806
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 3 cut(s) 219, 433, 592
AcyI GRCGYC 1 cut(s) 959
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 6 cut(s) 32, 215, 404, 446, 547, 915
AflIII ACRYGT 2 cut(s) 180, 637
AgsI TTSAA 6 cut(s) 99, 614, 634, 867, 896, 933
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 4 cut(s) 103, 108, 460, 643
AluBI AGCT 2 cut(s) 116, 584
AluI AGCT 2 cut(s) 116, 584
Alw21I GWGCWC 2 cut(s) 8, 469
Alw26I GTCTC 2 cut(s) 79, 127
AlwI GGATC 5 cut(s) 160, 251, 761, 774, 806
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 3 cut(s) 106, 358, 503
ApeKI GCWGC 2 cut(s) 113, 116
ApoI RAATTY 3 cut(s) 219, 433, 592
AseI ATTAAT 1 cut(s) 732
Asp700I GAANNNNTTC 2 cut(s) 94, 433
AspLEI GCGC 2 cut(s) 742, 916
AspS9I GGNCC 2 cut(s) 271, 647
AsuC2I CCSGG 2 cut(s) 82, 242
AsuHPI GGTGA 2 cut(s) 422, 429
AvaII GGWCC 2 cut(s) 271, 647
BalI TGGCCA 1 cut(s) 360
BamHI GGATCC 1 cut(s) 766
BanII GRGCYC 1 cut(s) 874
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 2 cut(s) 8, 469
BbvI GCAGC 2 cut(s) 103, 125
BciT130I CCWGG 4 cut(s) 105, 110, 462, 645
BciVI GTATCC 1 cut(s) 247
BclI TGATCA 1 cut(s) 471
BcnI CCSGG 2 cut(s) 82, 242
BcoDI GTCTC 2 cut(s) 79, 127
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 2 cut(s) 117, 531
BfoI RGCGCY 1 cut(s) 743
BfuI GTATCC 1 cut(s) 247
BglII AGATCT 1 cut(s) 157
BisI GCNGC 3 cut(s) 114, 117, 917
BlsI GCNGC 3 cut(s) 115, 118, 918
Bme1390I CCNGG 6 cut(s) 82, 105, 110, 242, 462, 645
Bme18I GGWCC 2 cut(s) 271, 647
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 271, 647
BmiI GGNNCC 2 cut(s) 539, 768
BmrFI CCNGG 6 cut(s) 82, 105, 110, 242, 462, 645
BmsI GCATC 5 cut(s) 501, 646, 657, 685, 714
BoxI GACNNNNGTC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 195
BpmI CTGGAG 3 cut(s) 87, 285, 564
BpuMI CCSGG 2 cut(s) 82, 242
BsaBI GATNNNNATC 1 cut(s) 671
BsaHI GRCGYC 1 cut(s) 959
BsaJI CCNNGG 2 cut(s) 240, 488
BsaWI WCCGGW 2 cut(s) 268, 923
Bsc4I CCNNNNNNNGG 6 cut(s) 32, 215, 404, 446, 547, 915
Bse1I ACTGG 5 cut(s) 71, 302, 440, 668, 768
Bse3DI GCAATG 1 cut(s) 821
Bse8I GATNNNNATC 1 cut(s) 671
BseBI CCWGG 4 cut(s) 105, 110, 462, 645
BseDI CCNNGG 2 cut(s) 240, 488
BseGI GGATG 3 cut(s) 392, 672, 729
BseJI GATNNNNATC 1 cut(s) 671
BseLI CCNNNNNNNGG 6 cut(s) 32, 215, 404, 446, 547, 915
BseMI GCAATG 1 cut(s) 821
BseMII CTCAG 4 cut(s) 90, 210, 713, 724
BseNI ACTGG 5 cut(s) 71, 302, 440, 668, 768
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 2 cut(s) 103, 125
Bsh1236I CGCG 1 cut(s) 916
BshFI GGCC 3 cut(s) 108, 360, 505
BsiHKAI GWGCWC 2 cut(s) 8, 469
BsiSI CCGG 4 cut(s) 82, 242, 269, 924
BslI CCNNNNNNNGG 6 cut(s) 32, 215, 404, 446, 547, 915
BsmAI GTCTC 2 cut(s) 79, 127
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 3 cut(s) 108, 360, 505
Bsp1286I GDGCHC 3 cut(s) 8, 469, 874
Bsp143I GATC 7 cut(s) 152, 157, 256, 314, 471, 766, 798
BspACI CCGC 3 cut(s) 173, 193, 916
BspANI GGCC 3 cut(s) 108, 360, 505
BspCNI CTCAG 4 cut(s) 89, 209, 712, 723
BspFNI CGCG 1 cut(s) 916
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 2 cut(s) 539, 768
BspMAI CTGCAG 2 cut(s) 121, 535
BspPI GGATC 5 cut(s) 160, 251, 761, 774, 806
BsrBI CCGCTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 821
BsrI ACTGG 5 cut(s) 71, 302, 440, 668, 768
BssECI CCNNGG 2 cut(s) 240, 488
BssMI GATC 7 cut(s) 152, 157, 256, 314, 471, 766, 798
BssNI GRCGYC 1 cut(s) 959
BssT1I CCWWGG 1 cut(s) 488
Bst2UI CCWGG 4 cut(s) 105, 110, 462, 645
Bst4CI ACNGT 3 cut(s) 13, 278, 565
Bst6I CTCTTC 1 cut(s) 483
BstACI GRCGYC 1 cut(s) 959
BstAPI GCANNNNNTGC 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 325, 531
BstDEI CTNAG 4 cut(s) 76, 196, 699, 710
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 3 cut(s) 392, 672, 729
BstFNI CGCG 1 cut(s) 916
BstH2I RGCGCY 1 cut(s) 743
BstHHI GCGC 2 cut(s) 742, 916
BstKTI GATC 7 cut(s) 155, 160, 259, 317, 474, 769, 801
BstMAI GTCTC 2 cut(s) 79, 127
BstMBI GATC 7 cut(s) 152, 157, 256, 314, 471, 766, 798
BstMWI GCNNNNNNNGC 4 cut(s) 125, 511, 704, 869
BstNI CCWGG 4 cut(s) 105, 110, 462, 645
BstNSI RCATGY 2 cut(s) 641, 851
BstPAI GACNNNNGTC 1 cut(s) 289
BstSCI CCNGG 6 cut(s) 80, 103, 108, 240, 460, 643
BstSFI CTRYAG 2 cut(s) 117, 531
BstUI CGCG 1 cut(s) 916
BstV1I GCAGC 2 cut(s) 103, 125
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 3 cut(s) 157, 256, 766
BstXI CCANNNNNNTGG 2 cut(s) 281, 970
BstYI RGATCY 3 cut(s) 157, 256, 766
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 3 cut(s) 108, 360, 505
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 3 cut(s) 392, 672, 729
BtsIMutI CAGTG 1 cut(s) 761
Cac8I GCNNGC 2 cut(s) 325, 531
CaiI CAGNNNCTG 1 cut(s) 125
CciI TCATGA 1 cut(s) 816
CfoI GCGC 2 cut(s) 742, 916
Cfr13I GGNCC 2 cut(s) 271, 647
CseI GACGC 1 cut(s) 948
Csp6I GTAC 1 cut(s) 14
CviAII CATG 8 cut(s) 356, 625, 638, 782, 817, 841, 848, 970
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 4 cut(s) 76, 196, 699, 710
DpnI GATC 7 cut(s) 154, 159, 258, 316, 473, 768, 800
DpnII GATC 7 cut(s) 152, 157, 256, 314, 471, 766, 798
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 488
Eco24I GRGCYC 1 cut(s) 874
Eco47I GGWCC 2 cut(s) 271, 647
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoRI GAATTC 2 cut(s) 219, 433
EcoRII CCWGG 4 cut(s) 103, 108, 460, 643
EcoT14I CCWWGG 1 cut(s) 488
EcoT22I ATGCAT 1 cut(s) 787
EcoT38I GRGCYC 1 cut(s) 874
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 8 cut(s) 359, 628, 641, 785, 820, 844, 851, 973
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FatI CATG 8 cut(s) 355, 624, 637, 781, 816, 840, 847, 969
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 3 cut(s) 114, 117, 917
FokI GGATG 3 cut(s) 379, 679, 736
FriOI GRGCYC 1 cut(s) 874
Fsp4HI GCNGC 3 cut(s) 114, 117, 917
FspBI CTAG 1 cut(s) 261
GlaI GCGC 2 cut(s) 741, 915
GluI GCNGC 3 cut(s) 114, 117, 917
GsuI CTGGAG 3 cut(s) 87, 285, 564
HaeII RGCGCY 1 cut(s) 743
HaeIII GGCC 3 cut(s) 108, 360, 505
HapII CCGG 4 cut(s) 82, 242, 269, 924
HgaI GACGC 1 cut(s) 948
HhaI GCGC 2 cut(s) 742, 916
Hin1I GRCGYC 1 cut(s) 959
Hin1II CATG 8 cut(s) 359, 628, 641, 785, 820, 844, 851, 973
Hin6I GCGC 2 cut(s) 740, 914
HinP1I GCGC 2 cut(s) 740, 914
HinfI GANTC 3 cut(s) 212, 290, 298
HpaII CCGG 4 cut(s) 82, 242, 269, 924
HphI GGTGA 2 cut(s) 422, 429
Hpy166II GTNNAC 2 cut(s) 274, 350
Hpy188I TCNGA 7 cut(s) 157, 199, 256, 319, 471, 684, 702
Hpy188III TCNNGA 4 cut(s) 216, 224, 817, 867
Hpy8I GTNNAC 2 cut(s) 274, 350
HpyAV CCTTC 3 cut(s) 418, 423, 697
HpyCH4III ACNGT 3 cut(s) 13, 278, 565
HpyCH4IV ACGT 2 cut(s) 182, 286
HpyCH4V TGCA 9 cut(s) 119, 500, 514, 533, 670, 727, 775, 785, 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 511, 704, 869
HpyF3I CTNAG 4 cut(s) 76, 196, 699, 710
HpySE526I ACGT 2 cut(s) 182, 286
Hsp92I GRCGYC 1 cut(s) 959
Hsp92II CATG 8 cut(s) 359, 628, 641, 785, 820, 844, 851, 973
HspAI GCGC 2 cut(s) 740, 914
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 7 cut(s) 152, 157, 256, 314, 471, 766, 798
LmnI GCTCC 1 cut(s) 831
Lsp1109I GCAGC 2 cut(s) 103, 125
LweI GCATC 5 cut(s) 501, 646, 657, 685, 714
MaeI CTAG 1 cut(s) 261
MaeII ACGT 2 cut(s) 182, 286
MaeIII GTNAC 1 cut(s) 559
MalI GATC 7 cut(s) 154, 159, 258, 316, 473, 768, 800
MbiI CCGCTC 1 cut(s) 195
MboI GATC 7 cut(s) 152, 157, 256, 314, 471, 766, 798
MboII GAAGA 5 cut(s) 152, 200, 470, 563, 884
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 3 cut(s) 157, 256, 766
MhlI GDGCHC 3 cut(s) 8, 469, 874
MlsI TGGCCA 1 cut(s) 360
MluCI AATT 8 cut(s) 93, 219, 382, 433, 592, 685, 744, 933
MluNI TGGCCA 1 cut(s) 360
MlyI GAGTC 2 cut(s) 292, 299
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 9 cut(s) 80, 177, 180, 313, 439, 495, 541, 551, 888
Mox20I TGGCCA 1 cut(s) 360
Mph1103I ATGCAT 1 cut(s) 787
MroXI GAANNNNTTC 2 cut(s) 94, 433
MscI TGGCCA 1 cut(s) 360
MseI TTAA 3 cut(s) 732, 788, 977
Msp20I TGGCCA 1 cut(s) 360
MspA1I CMGCKG 2 cut(s) 116, 584
MspI CCGG 4 cut(s) 82, 242, 269, 924
MspR9I CCNGG 6 cut(s) 82, 105, 110, 242, 462, 645
MunI CAATTG 1 cut(s) 933
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 4 cut(s) 105, 110, 462, 645
MvnI CGCG 1 cut(s) 916
MwoI GCNNNNNNNGC 4 cut(s) 125, 511, 704, 869
NciI CCSGG 2 cut(s) 82, 242
NdeII GATC 7 cut(s) 152, 157, 256, 314, 471, 766, 798
NlaIII CATG 8 cut(s) 359, 628, 641, 785, 820, 844, 851, 973
NlaIV GGNNCC 2 cut(s) 539, 768
NsiI ATGCAT 1 cut(s) 787
NspI RCATGY 2 cut(s) 641, 851
PagI TCATGA 1 cut(s) 816
PciI ACATGT 1 cut(s) 637
PctI GAATGC 1 cut(s) 865
PdmI GAANNNNTTC 2 cut(s) 94, 433
PfeI GAWTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 404
PkrI GCNGC 3 cut(s) 115, 118, 918
PleI GAGTC 2 cut(s) 292, 298
PpsI GAGTC 2 cut(s) 292, 298
PscI ACATGT 1 cut(s) 637
PshAI GACNNNNGTC 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 732
Psp6I CCWGG 4 cut(s) 103, 108, 460, 643
PspGI CCWGG 4 cut(s) 103, 108, 460, 643
PspN4I GGNNCC 2 cut(s) 539, 768
PspPI GGNCC 2 cut(s) 271, 647
PstI CTGCAG 2 cut(s) 121, 535
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 3 cut(s) 157, 256, 766
PvuII CAGCTG 2 cut(s) 116, 584
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SaqAI TTAA 3 cut(s) 732, 788, 977
SatI GCNGC 3 cut(s) 114, 117, 917
Sau3AI GATC 7 cut(s) 152, 157, 256, 314, 471, 766, 798
Sau96I GGNCC 2 cut(s) 271, 647
SbfI CCTGCAGG 1 cut(s) 535
SchI GAGTC 2 cut(s) 292, 299
ScrFI CCNGG 6 cut(s) 82, 105, 110, 242, 462, 645
SdaI CCTGCAGG 1 cut(s) 535
SduI GDGCHC 3 cut(s) 8, 469, 874
SetI ASST 9 cut(s) 118, 169, 185, 289, 487, 527, 543, 586, 754
SfaNI GCATC 5 cut(s) 501, 646, 657, 685, 714
SfcI CTRYAG 2 cut(s) 117, 531
SinI GGWCC 2 cut(s) 271, 647
Sse8387I CCTGCAGG 1 cut(s) 535
Sse9I AATT 8 cut(s) 93, 219, 382, 433, 592, 685, 744, 933
SsiI CCGC 3 cut(s) 173, 193, 916
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 6 cut(s) 80, 103, 108, 240, 460, 643
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 3 cut(s) 13, 278, 565
TaiI ACGT 2 cut(s) 185, 289
TasI AATT 8 cut(s) 93, 219, 382, 433, 592, 685, 744, 933
TatI WGTACW 1 cut(s) 13
TauI GCSGC 1 cut(s) 919
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 3 cut(s) 732, 788, 977
Tru9I TTAA 3 cut(s) 732, 788, 977
TscAI CASTG 1 cut(s) 768
TseI GCWGC 2 cut(s) 113, 116
TspDTI ATGAA 3 cut(s) 805, 807, 857
TspRI CASTG 1 cut(s) 768
Van91I CCANNNNNTGG 1 cut(s) 404
VpaK11BI GGWCC 2 cut(s) 271, 647
VspI ATTAAT 1 cut(s) 732
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 3 cut(s) 219, 433, 592
XceI RCATGY 2 cut(s) 641, 851
XmnI GAANNNNTTC 2 cut(s) 94, 433
XspI CTAG 1 cut(s) 261
Zsp2I ATGCAT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.