Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007458

Physical Location & Seq

Genomic Coordinates Forward (+)

45696247 .. 45699124

Gene Structure 2878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0360900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAAGAACGAAGAACAAGCTCGGTTTCTGTTTGGGATTTCGCTCTCTGATAGACCCAAATGGCAGCAATTCCTGCTTTGCTCTTCTGGGTTCTTCTTTGGTTATCTGGTTAATGGTGTCTGTGAGGAATATGTGTTTAACAGGCTACAATTCAGGACCCTGCTTGTTTCGGATTCTGTTTCTGATATGTTCCTTGCTGCAGTTATGGGTGGTACTTCACATGTGTACAAGGATTTGGTGTATCTATTTCTGATTTATCTTCAAGGCTTTACCACCAAGAAAATGGTGAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATAGGCTCTCATGGACTCACCAAAGGCTCCTTGGCTTTTCTCAACTACCCTGCACAGCTAATGTTCAAATCAGCAAAGGTTTTGCCTGTGATGATAATGGGAGCCTTCATACCAGGTTTGAGGCGGAAGTATCCACCTCATGAGTACGTTTCTGCAATCCTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGCGGATGCACAAACGTCTCCCAACTTCAGCGTGATTGGTGTGGTGATGGTATCGGGTGCTCTAGTCATGGATTCGTTTTTGGGTAATTTGCAAGAAGCAATATTTACCATGAATCCTGAAACCACACAGATGGAGATGCTGTTTTGCTCTACAGTAGTTAGTCTACCTTTCTTGGTGCCACCAATGATTTTGACAGGAGAATTATTCAAAGCGTGGAGTTCATGTTCTCAGCATCCATACGTATATGGTGTGTTAGTCTTGGAAGCCATGGCCACGTTTATTGGCCAAGTTTCTGTCCTTTCCTTCATTTATCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

279

Amino Acids

31.11

Weight (kDa)

8.27

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	23 - 275	3.9e-54	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16310
fragaria_vesca	FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170
malus_domestica	MD09G1205800.v1.1 MD17G1186700.v1.1
prunus_persica	Prupe.3G061200_v2.0.a1
pyrus_communis	pycom09g12250 pycom17g19560
rosa_chinensis	RchiOBHm_Chr2g0140061
rosa_laevigata	RLG00000019845
rosa_multiflora	Rmu_co8305803.1_g000001 Rmu_sc0003365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105090
rosa_rugosa	Rorug02G0360900
rosa_samantha	Rh2AG411500 Rh2BG421800 Rh2CG397600 Rh2DG431200
rosa_wichuraiana	Rw2G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	682
AciI	CCGC	2 cut(s)	451, 521
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	2 cut(s)	789, 802
AcuI	CTGAAG	1 cut(s)	529
AfaI	GTAC	3 cut(s)	214, 227, 473
AfiI	CCNNNNNNNGG	1 cut(s)	493
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	263, 394, 727
AjnI	CCWGG	1 cut(s)	439
AloI	GAACNNNNNNTCC	2 cut(s)	727, 759
AluBI	AGCT	3 cut(s)	20, 313, 385
AluI	AGCT	3 cut(s)	20, 313, 385
Alw21I	GWGCWC	1 cut(s)	580
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	499
AoxI	GGCC	2 cut(s)	789, 802
ApeKI	GCWGC	2 cut(s)	64, 197
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	4 cut(s)	298, 337, 505, 574
AvaII	GGWCC	1 cut(s)	156
BalI	TGGCCA	2 cut(s)	791, 804
BanI	GGYRCC	1 cut(s)	694
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	76, 184
BccI	CCATC	2 cut(s)	559, 643
BciT130I	CCWGG	1 cut(s)	441
BciVI	GTATCC	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	2 cut(s)	198, 669
BfuI	GTATCC	1 cut(s)	468
BisI	GCNGC	2 cut(s)	65, 198
BlsI	GCNGC	2 cut(s)	66, 199
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	4 cut(s)	158, 355, 430, 696
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	3 cut(s)	514, 645, 760
BpiI	GAAGAC	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	517
BsaAI	YACGTR	1 cut(s)	760
BsaJI	CCNNGG	3 cut(s)	293, 357, 786
BsaXI	ACNNNNNCTCC	4 cut(s)	644, 674, 727, 757
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	293, 357, 786
BseGI	GGATG	2 cut(s)	529, 751
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	761
BseXI	GCAGC	2 cut(s)	76, 184
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	791, 804
BshNI	GGYRCC	1 cut(s)	694
BsiHKAI	GWGCWC	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	540
BsmBI	CGTCTC	1 cut(s)	540
BsnI	GGCC	2 cut(s)	791, 804
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	504
Bsp19I	CCATGG	2 cut(s)	293, 786
BspACI	CCGC	2 cut(s)	451, 521
BspANI	GGCC	2 cut(s)	791, 804
BspCNI	CTCAG	1 cut(s)	760
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	4 cut(s)	158, 355, 430, 696
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	499
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	694
BsrGI	TGTACA	1 cut(s)	225
BssECI	CCNNGG	3 cut(s)	293, 357, 786
BssMI	GATC	1 cut(s)	504
BssT1I	CCWWGG	3 cut(s)	293, 357, 786
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	673
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	760
BstDEI	CTNAG	2 cut(s)	517, 747
BstDSI	CCRYGG	2 cut(s)	293, 786
BstF5I	GGATG	2 cut(s)	529, 751
BstKTI	GATC	1 cut(s)	507
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	1 cut(s)	504
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	2 cut(s)	198, 669
BstSNI	TACGTA	1 cut(s)	760
BstV1I	GCAGC	2 cut(s)	76, 184
BstV2I	GAAGAC	1 cut(s)	305
BstXI	CCANNNNNNTGG	2 cut(s)	283, 649
BsuI	GTATCC	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	791, 804
BtgI	CCRYGG	2 cut(s)	293, 786
BtsCI	GGATG	2 cut(s)	529, 751
CciI	TCATGA	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	156
CsiI	ACCWGGT	1 cut(s)	439
Csp6I	GTAC	3 cut(s)	213, 226, 472
CspCI	CAANNNNNGTGG	2 cut(s)	781, 816
CviAII	CATG	8 cut(s)	221, 294, 338, 467, 586, 628, 741, 787
CviQI	GTAC	3 cut(s)	213, 226, 472
DdeI	CTNAG	2 cut(s)	517, 747
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
EaeI	YGGCCR	2 cut(s)	789, 802
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	466
Eco105I	TACGTA	1 cut(s)	760
Eco130I	CCWWGG	3 cut(s)	293, 357, 786
Eco47I	GGWCC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	3 cut(s)	293, 357, 786
ErhI	CCWWGG	3 cut(s)	293, 357, 786
Esp3I	CGTCTC	1 cut(s)	540
FaeI	CATG	8 cut(s)	224, 297, 341, 470, 589, 631, 744, 790
FatI	CATG	8 cut(s)	220, 293, 337, 466, 585, 627, 740, 786
FblI	GTMKAC	1 cut(s)	682
Fnu4HI	GCNGC	2 cut(s)	65, 198
FokI	GGATG	2 cut(s)	536, 738
Fsp4HI	GCNGC	2 cut(s)	65, 198
FspBI	CTAG	1 cut(s)	581
GluI	GCNGC	2 cut(s)	65, 198
HaeIII	GGCC	2 cut(s)	791, 804
Hin1II	CATG	8 cut(s)	224, 297, 341, 470, 589, 631, 744, 790
HinfI	GANTC	4 cut(s)	173, 342, 590, 631
HphI	GGTGA	4 cut(s)	298, 337, 505, 574
Hpy166II	GTNNAC	3 cut(s)	226, 289, 683
Hpy188I	TCNGA	5 cut(s)	49, 172, 184, 252, 504
Hpy188III	TCNNGA	4 cut(s)	154, 467, 635, 837
Hpy8I	GTNNAC	3 cut(s)	226, 289, 683
HpyAV	CCTTC	3 cut(s)	442, 497, 832
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4IV	ACGT	4 cut(s)	474, 533, 759, 794
HpyCH4V	TGCA	5 cut(s)	200, 380, 482, 527, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	2 cut(s)	517, 747
HpySE526I	ACGT	4 cut(s)	474, 533, 759, 794
Hsp92II	CATG	8 cut(s)	224, 297, 341, 470, 589, 631, 744, 790
Kzo9I	GATC	1 cut(s)	504
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	359, 428
Lsp1109I	GCAGC	2 cut(s)	76, 184
LweI	GCATC	3 cut(s)	514, 645, 760
MabI	ACCWGGT	1 cut(s)	439
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	4 cut(s)	474, 533, 759, 794
MalI	GATC	1 cut(s)	506
MboI	GATC	1 cut(s)	504
MboII	GAAGA	6 cut(s)	16, 23, 75, 85, 251, 310
MhlI	GDGCHC	1 cut(s)	580
MlsI	TGGCCA	2 cut(s)	791, 804
MluCI	AATT	4 cut(s)	68, 149, 604, 719
MluNI	TGGCCA	2 cut(s)	791, 804
MlyI	GAGTC	1 cut(s)	336
MnlI	CCTC	3 cut(s)	118, 441, 474
Mox20I	TGGCCA	2 cut(s)	791, 804
MscI	TGGCCA	2 cut(s)	791, 804
MseI	TTAA	2 cut(s)	111, 138
MslI	CAYNNNNRTG	1 cut(s)	647
Msp20I	TGGCCA	2 cut(s)	791, 804
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	1 cut(s)	73
NcoI	CCATGG	2 cut(s)	293, 786
NdeII	GATC	1 cut(s)	504
NlaIII	CATG	8 cut(s)	224, 297, 341, 470, 589, 631, 744, 790
NlaIV	GGNNCC	4 cut(s)	158, 355, 430, 696
NspI	RCATGY	1 cut(s)	224
PagI	TCATGA	1 cut(s)	466
PciI	ACATGT	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	173, 590, 631
PkrI	GCNGC	2 cut(s)	66, 199
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
Ppu21I	YACGTR	1 cut(s)	760
PpuMI	RGGWCCY	1 cut(s)	156
PscI	ACATGT	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	4 cut(s)	158, 355, 430, 696
PspPI	GGNCC	1 cut(s)	156
PspPPI	RGGWCCY	1 cut(s)	156
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	3 cut(s)	214, 227, 473
RsaNI	GTAC	3 cut(s)	213, 226, 472
RseI	CAYNNNNRTG	1 cut(s)	647
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	111, 138
SatI	GCNGC	2 cut(s)	65, 198
Sau3AI	GATC	1 cut(s)	504
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	1 cut(s)	580
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	3 cut(s)	514, 645, 760
SfcI	CTRYAG	2 cut(s)	198, 669
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	647
SnaBI	TACGTA	1 cut(s)	760
Sse9I	AATT	4 cut(s)	68, 149, 604, 719
SsiI	CCGC	2 cut(s)	451, 521
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	3 cut(s)	293, 357, 786
TaaI	ACNGT	1 cut(s)	673
TaiI	ACGT	4 cut(s)	477, 536, 762, 797
TasI	AATT	4 cut(s)	68, 149, 604, 719
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	173, 590, 631
Tru1I	TTAA	2 cut(s)	111, 138
Tru9I	TTAA	2 cut(s)	111, 138
TseI	GCWGC	2 cut(s)	64, 197
TspDTI	ATGAA	5 cut(s)	17, 424, 644, 729, 814
VpaK11BI	GGWCC	1 cut(s)	156
XceI	RCATGY	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	2 cut(s)	280, 355
XmiI	GTMKAC	1 cut(s)	682
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.