Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8305803.1

Orthogroup ID

OG0007458

Physical Location & Seq

Genomic Coordinates Reverse (-)

135 .. 713

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8305803.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgagtgccactgcaaatagaactccgaaatctggtaggcagacattgttgtaccaagatctagcttcacctatctcggcccggagaggaaaaatctcaactccaggccaggcagctgcagtatctgctctgtggcgcgagagttgtagtgatcggtcggatcttccccctcctcctctttacactttggaagaccgctcagacttttcccctgaatctggaattcaagattatccgatatccccagaaatcaaatcagatcccagaactccgttccaaagttctggatatgatttctcgactcctgtcaaaaacaaatcagaggccagcacttcttatgctctctcaagtggacagcatggccaacagggttcggcaactatgaattggtggtcaccctcaaagagtggtggcgagcaagatgacaagggaaggagttcaccagtggagggtgttgttcagcctggtgctttgatcactcttccacctccaagggaagttgcaaggccagaaatgcaaaggagtaccatgcctgcagcaaatccccaagaggaagaatgggttactgtttatgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

192

Amino Acids

20.76

Weight (kDa)

5.27

Isoelectric Point (pI)

73.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16310
fragaria_vesca	FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170
malus_domestica	MD09G1205800.v1.1 MD17G1186700.v1.1
prunus_persica	Prupe.3G061200_v2.0.a1
pyrus_communis	pycom09g12250 pycom17g19560
rosa_chinensis	RchiOBHm_Chr2g0140061
rosa_laevigata	RLG00000019845
rosa_multiflora	Rmu_co8305803.1_g000001 Rmu_sc0003365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105090
rosa_rugosa	Rorug02G0360900
rosa_samantha	Rh2AG411500 Rh2BG421800 Rh2CG397600 Rh2DG431200
rosa_wichuraiana	Rw2G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	138
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	2 cut(s)	168, 254
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	222
AfaI	GTAC	2 cut(s)	53, 526
AfiI	CCNNNNNNNGG	3 cut(s)	32, 218, 449
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	3 cut(s)	103, 108, 463
AluBI	AGCT	2 cut(s)	65, 116
AluI	AGCT	2 cut(s)	65, 116
AlwI	GGATC	2 cut(s)	168, 254
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	5 cut(s)	78, 106, 324, 361, 506
ApeKI	GCWGC	3 cut(s)	113, 116, 536
ApoI	RAATTY	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	3 cut(s)	60, 387, 432
BalI	TGGCCA	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	103, 125, 548
BciT130I	CCWGG	3 cut(s)	105, 110, 465
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	82
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	2 cut(s)	117, 534
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	3 cut(s)	114, 117, 537
BlsI	GCNGC	3 cut(s)	115, 118, 538
Bme1390I	CCNGG	4 cut(s)	82, 105, 110, 465
BmgT120I	GGNCC	1 cut(s)	79
BmrFI	CCNGG	4 cut(s)	82, 105, 110, 465
BoxI	GACNNNNGTC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 218, 449
Bse1I	ACTGG	1 cut(s)	443
BseBI	CCWGG	3 cut(s)	105, 110, 465
BseDI	CCNNGG	1 cut(s)	491
BseLI	CCNNNNNNNGG	3 cut(s)	32, 218, 449
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	443
BseRI	GAGGAG	2 cut(s)	162, 165
BseXI	GCAGC	3 cut(s)	103, 125, 548
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	5 cut(s)	80, 108, 326, 363, 508
BsiEI	CGRYCG	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	32, 218, 449
BsnI	GGCC	5 cut(s)	80, 108, 326, 363, 508
Bsp143I	GATC	5 cut(s)	58, 151, 160, 259, 474
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	5 cut(s)	80, 108, 326, 363, 508
BspCNI	CTCAG	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	138
BspMAI	CTGCAG	2 cut(s)	121, 538
BspPI	GGATC	2 cut(s)	168, 254
BsrBI	CCGCTC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	5 cut(s)	58, 151, 160, 259, 474
BssT1I	CCWWGG	1 cut(s)	491
Bst2UI	CCWGG	3 cut(s)	105, 110, 465
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	1 cut(s)	486
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	328, 416, 534
BstDEI	CTNAG	1 cut(s)	199
BstEII	GGTNACC	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	5 cut(s)	61, 154, 163, 262, 477
BstMBI	GATC	5 cut(s)	58, 151, 160, 259, 474
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 514
BstNI	CCWGG	3 cut(s)	105, 110, 465
BstPAI	GACNNNNGTC	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	393
BstSCI	CCNGG	4 cut(s)	80, 103, 108, 463
BstSFI	CTRYAG	2 cut(s)	117, 534
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	103, 125, 548
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	3 cut(s)	58, 160, 259
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	3 cut(s)	58, 160, 259
BsuRI	GGCC	5 cut(s)	80, 108, 326, 363, 508
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	9, 450
Cac8I	GCNNGC	3 cut(s)	328, 416, 534
CaiI	CAGNNNCTG	1 cut(s)	125
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	52, 525
CviAII	CATG	2 cut(s)	359, 529
CviJI	RGCY	8 cut(s)	65, 80, 108, 116, 326, 363, 463, 508
CviKI_1	RGCY	8 cut(s)	65, 80, 108, 116, 326, 363, 463, 508
CviQI	GTAC	2 cut(s)	52, 525
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	5 cut(s)	60, 153, 162, 261, 476
DpnII	GATC	5 cut(s)	58, 151, 160, 259, 474
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	491
Eco32I	GATATC	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	222
EcoRII	CCWGG	3 cut(s)	103, 108, 463
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	2 cut(s)	362, 532
FaiI	YATR	6 cut(s)	291, 339, 360, 383, 530, 573
FatI	CATG	2 cut(s)	358, 528
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	3 cut(s)	114, 117, 537
Fsp4HI	GCNGC	3 cut(s)	114, 117, 537
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	3 cut(s)	114, 117, 537
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	5 cut(s)	80, 108, 326, 363, 508
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	362, 532
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	215, 301
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	3 cut(s)	60, 387, 432
Hpy166II	GTNNAC	2 cut(s)	353, 440
Hpy188I	TCNGA	6 cut(s)	27, 160, 202, 237, 259, 322
Hpy188III	TCNNGA	4 cut(s)	219, 227, 285, 298
Hpy8I	GTNNAC	2 cut(s)	353, 440
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4V	TGCA	5 cut(s)	14, 119, 503, 517, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 514
HpyF3I	CTNAG	1 cut(s)	199
Hsp92II	CATG	2 cut(s)	362, 532
HspAI	GCGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	5 cut(s)	58, 151, 160, 259, 474
Lsp1109I	GCAGC	3 cut(s)	103, 125, 548
MaeI	CTAG	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	393, 562
MalI	GATC	5 cut(s)	60, 153, 162, 261, 476
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	5 cut(s)	58, 151, 160, 259, 474
MboII	GAAGA	4 cut(s)	155, 203, 473, 566
MflI	RGATCY	3 cut(s)	58, 160, 259
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	2 cut(s)	222, 385
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	9 cut(s)	80, 180, 183, 186, 316, 409, 442, 498, 544
Mox20I	TGGCCA	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	4 cut(s)	82, 105, 110, 465
MvaI	CCWGG	3 cut(s)	105, 110, 465
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	125, 514
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	5 cut(s)	58, 151, 160, 259, 474
NlaIII	CATG	2 cut(s)	362, 532
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	115, 118, 538
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PshAI	GACNNNNGTC	1 cut(s)	305
Psp6I	CCWGG	3 cut(s)	103, 108, 463
PspEI	GGTNACC	1 cut(s)	393
PspGI	CCWGG	3 cut(s)	103, 108, 463
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	2 cut(s)	121, 538
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	3 cut(s)	58, 160, 259
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	53, 526
RsaNI	GTAC	2 cut(s)	52, 525
SatI	GCNGC	3 cut(s)	114, 117, 537
Sau3AI	GATC	5 cut(s)	58, 151, 160, 259, 474
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	4 cut(s)	82, 105, 110, 465
SetI	ASST	4 cut(s)	67, 73, 118, 490
SfcI	CTRYAG	2 cut(s)	117, 534
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	2 cut(s)	222, 385
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	4 cut(s)	80, 103, 108, 463
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	568
TaqI	TCGA	1 cut(s)	299
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	222, 385
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	2 cut(s)	16, 450
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	3 cut(s)	113, 116, 536
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	1 cut(s)	398
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	2 cut(s)	16, 450
XapI	RAATTY	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.