Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007458

Physical Location & Seq

Genomic Coordinates Forward (+)

22318731 .. 22322549

Gene Structure 3819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1186700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAGCACCACAGTACATAGAACTCCCAAATCCAGTAAGCAGTCATTGTTTTTCCAAGATGTAGCTTCACCTGTATCGTCCAGGAGAGGAAGAAATTCAACTCCAGGCCAGGCAGCTGCGGTCTCTGCTCTATGGCGCGAGAGTGGTGGGGGATCGGACCTTCCACCACCTCCGCTTTACACATTGGAAGACCGGTCGGACTTCTCCCCTGAATCTGGAATTCCAGATTACCCATTATCCCCAGAAATCAAGTCGGATTCTAGAACTCCGGTGCATAGTTTTGGCCGTGATTCCTCGACTCTGGTGAAGGGAAAATCAGAGGCAAGCACTTCATATGCTCTATCAAATGGACAGCATGGCCAACAGGGTTCAGCGAGTATGAGTTGGTGGTCGCCCTCGAAGAGTGGTGGTGAGCAAGAAGAGAAGGGAAAGGGTTCACCAGTGGAGGGTGTTGTTCAGCCCCTTGCTCTGATCACTCTTCCACCTCCAAGGGAAGTTGCAAGGCCAGAGATGCAAAGGAATACCTTGCCTACAGGGAACATCAACGAAGAAGAATGGGTTACTGTTTACGGATTCTCTCCAGCTGATACAAATTTAGTCTTACGAGAGTTTGAAAAATGTGGAGTGATTTTGAAACATGTTCCTGGTCCAAGAGATGCCAACTGGATGCACATTCTATATCAGAGTTACTCTGATGCTCAGAAGGCTCTCAGCAAGAATGGGATGCAAATTAACGGGGCACTAATTATAGGCGTGAAGCCACTGGATCCAATGCAACGCCATGCATTAAATGAAAGGGTCAACAATCAGGGTTTCATGACATTTCCCCCTCAACCGTCCATGAAACATGCAGAGGTGAATGCTTCAAGAGCCCCCCCTCATCCTTACTATCTTCAAAACGGTAATACCAGCACGCAGAAATCTGGAGGTGCCATTGCTTCCCCAGCAAAGTCATTGGTGTCCAAAGTCATGGATTTAATGTTTGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

331

Amino Acids

35.76

Weight (kDa)

8.84

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_Nup35	PF05172	182 - 265	3.5e-31	Nup53/35/40-type RNA recognition motif
Nup35_RRM_2	PF14605	185 - 237	6.2e-08	Nup53/35/40-type RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16310
fragaria_vesca	FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170
malus_domestica	MD09G1205800.v1.1 MD17G1186700.v1.1
prunus_persica	Prupe.3G061200_v2.0.a1
pyrus_communis	pycom09g12250 pycom17g19560
rosa_chinensis	RchiOBHm_Chr2g0140061
rosa_laevigata	RLG00000019845
rosa_multiflora	Rmu_co8305803.1_g000001 Rmu_sc0003365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105090
rosa_rugosa	Rorug02G0360900
rosa_samantha	Rh2AG411500 Rh2BG421800 Rh2CG397600 Rh2DG431200
rosa_wichuraiana	Rw2G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	929
AccII	CGCG	1 cut(s)	138
AciI	CCGC	2 cut(s)	119, 173
AclWI	GGATC	3 cut(s)	160, 761, 774
AcoI	YGGCCR	2 cut(s)	283, 358
AcsI	RAATTY	3 cut(s)	94, 219, 592
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	215, 446
AflIII	ACRYGT	1 cut(s)	637
AgeI	ACCGGT	1 cut(s)	192
AgsI	TTSAA	5 cut(s)	99, 614, 634, 867, 896
AjnI	CCWGG	4 cut(s)	80, 103, 108, 643
AluBI	AGCT	3 cut(s)	65, 116, 584
AluI	AGCT	3 cut(s)	65, 116, 584
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	3 cut(s)	160, 761, 774
AoxI	GGCC	4 cut(s)	106, 283, 358, 503
ApeKI	GCWGC	2 cut(s)	113, 116
ApoI	RAATTY	3 cut(s)	94, 219, 592
AsiGI	ACCGGT	1 cut(s)	192
Asp700I	GAANNNNTTC	2 cut(s)	94, 433
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	157, 647
AsuHPI	GGTGA	5 cut(s)	60, 316, 422, 429, 868
AvaII	GGWCC	2 cut(s)	157, 647
BaeGI	GKGCMC	1 cut(s)	742
BalI	TGGCCA	1 cut(s)	360
BamHI	GGATCC	1 cut(s)	766
BanI	GGYRCC	1 cut(s)	929
BanII	GRGCYC	1 cut(s)	874
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	103, 125
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	4 cut(s)	82, 105, 110, 645
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	2 cut(s)	114, 117
BlsI	GCNGC	2 cut(s)	115, 118
Bme1390I	CCNGG	4 cut(s)	82, 105, 110, 645
Bme18I	GGWCC	2 cut(s)	157, 647
BmgT120I	GGNCC	2 cut(s)	157, 647
BmiI	GGNNCC	2 cut(s)	768, 931
BmrFI	CCNGG	4 cut(s)	82, 105, 110, 645
BmsI	GCATC	5 cut(s)	501, 646, 657, 685, 714
BpiI	GAAGAC	1 cut(s)	195
BpmI	CTGGAG	3 cut(s)	87, 564, 945
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	488
BsaWI	WCCGGW	2 cut(s)	192, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 446
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	4 cut(s)	33, 440, 668, 768
Bse3DI	GCAATG	1 cut(s)	933
BseBI	CCWGG	4 cut(s)	82, 105, 110, 645
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	3 cut(s)	672, 729, 880
BseLI	CCNNNNNNNGG	2 cut(s)	215, 446
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	2 cut(s)	713, 724
BseNI	ACTGG	4 cut(s)	33, 440, 668, 768
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	2 cut(s)	103, 125
BseYI	CCCAGC	1 cut(s)	943
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	197
BshFI	GGCC	4 cut(s)	108, 285, 360, 505
BshNI	GGYRCC	1 cut(s)	929
BshTI	ACCGGT	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	193, 269
BslI	CCNNNNNNNGG	2 cut(s)	215, 446
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	865
BsnI	GGCC	4 cut(s)	108, 285, 360, 505
Bso31I	GGTCTC	1 cut(s)	127
Bsp1286I	GDGCHC	3 cut(s)	8, 742, 874
Bsp143I	GATC	3 cut(s)	152, 471, 766
BspACI	CCGC	2 cut(s)	119, 173
BspANI	GGCC	4 cut(s)	108, 285, 360, 505
BspCNI	CTCAG	2 cut(s)	712, 723
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	816
BspLI	GGNNCC	2 cut(s)	768, 931
BspPI	GGATC	3 cut(s)	160, 761, 774
BspT107I	GGYRCC	1 cut(s)	929
BspTNI	GGTCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	933
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	4 cut(s)	33, 440, 668, 768
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	3 cut(s)	152, 471, 766
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	4 cut(s)	82, 105, 110, 645
Bst4CI	ACNGT	4 cut(s)	13, 565, 837, 902
Bst6I	CTCTTC	3 cut(s)	395, 414, 483
BstC8I	GCNNGC	2 cut(s)	325, 914
BstDEI	CTNAG	2 cut(s)	699, 710
BstF5I	GGATG	3 cut(s)	672, 729, 880
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	3 cut(s)	155, 474, 769
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	3 cut(s)	152, 471, 766
BstMCI	CGRYCG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 511, 704, 869, 944
BstNI	CCWGG	4 cut(s)	82, 105, 110, 645
BstNSI	RCATGY	2 cut(s)	641, 851
BstSCI	CCNGG	4 cut(s)	80, 103, 108, 643
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	742
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	103, 125
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	766
BstXI	CCANNNNNNTGG	1 cut(s)	970
BstYI	RGATCY	1 cut(s)	766
BsuRI	GGCC	4 cut(s)	108, 285, 360, 505
BtsCI	GGATG	3 cut(s)	672, 729, 880
BtsIMutI	CAGTG	2 cut(s)	447, 761
Cac8I	GCNNGC	2 cut(s)	325, 914
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	157, 647
Csp6I	GTAC	1 cut(s)	14
CspAI	ACCGGT	1 cut(s)	192
CviAII	CATG	7 cut(s)	356, 638, 782, 817, 841, 848, 970
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	2 cut(s)	699, 710
DpnI	GATC	3 cut(s)	154, 473, 768
DpnII	GATC	3 cut(s)	152, 471, 766
EaeI	YGGCCR	2 cut(s)	283, 358
Eam1104I	CTCTTC	3 cut(s)	395, 414, 483
EarI	CTCTTC	3 cut(s)	395, 414, 483
Eco130I	CCWWGG	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	874
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	157, 647
EcoRI	GAATTC	1 cut(s)	219
EcoRII	CCWGG	4 cut(s)	80, 103, 108, 643
EcoT14I	CCWWGG	1 cut(s)	488
EcoT22I	ATGCAT	1 cut(s)	787
EcoT38I	GRGCYC	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	7 cut(s)	359, 641, 785, 820, 844, 851, 973
FatI	CATG	7 cut(s)	355, 637, 781, 816, 840, 847, 969
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	114, 117
FokI	GGATG	3 cut(s)	679, 736, 867
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	2 cut(s)	114, 117
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	114, 117
GsaI	CCCAGC	1 cut(s)	947
GsuI	CTGGAG	3 cut(s)	87, 564, 945
HaeIII	GGCC	4 cut(s)	108, 285, 360, 505
HapII	CCGG	2 cut(s)	193, 269
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	7 cut(s)	359, 641, 785, 820, 844, 851, 973
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	5 cut(s)	212, 257, 290, 298, 573
HpaII	CCGG	2 cut(s)	193, 269
HphI	GGTGA	5 cut(s)	60, 316, 422, 429, 868
Hpy166II	GTNNAC	3 cut(s)	437, 568, 802
Hpy188I	TCNGA	8 cut(s)	157, 199, 256, 319, 471, 684, 694, 702
Hpy188III	TCNNGA	6 cut(s)	216, 224, 261, 817, 867, 924
Hpy8I	GTNNAC	3 cut(s)	437, 568, 802
HpyAV	CCTTC	4 cut(s)	170, 301, 418, 697
HpyCH4III	ACNGT	4 cut(s)	13, 565, 837, 902
HpyCH4V	TGCA	8 cut(s)	274, 500, 514, 670, 727, 775, 785, 851
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 511, 704, 869, 944
HpyF3I	CTNAG	2 cut(s)	699, 710
Hsp92II	CATG	7 cut(s)	359, 641, 785, 820, 844, 851, 973
HspAI	GCGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	152, 471, 766
Lsp1109I	GCAGC	2 cut(s)	103, 125
LweI	GCATC	5 cut(s)	501, 646, 657, 685, 714
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	559, 686
MalI	GATC	3 cut(s)	154, 473, 768
MboI	GATC	3 cut(s)	152, 471, 766
MboII	GAAGA	8 cut(s)	102, 200, 412, 431, 470, 560, 563, 884
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	3 cut(s)	8, 742, 874
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	5 cut(s)	94, 219, 592, 729, 744
MluNI	TGGCCA	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	2 cut(s)	177, 234
Mox20I	TGGCCA	1 cut(s)	360
Mph1103I	ATGCAT	1 cut(s)	787
MroXI	GAANNNNTTC	2 cut(s)	94, 433
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	3 cut(s)	732, 788, 977
Msp20I	TGGCCA	1 cut(s)	360
MspA1I	CMGCKG	2 cut(s)	116, 584
MspI	CCGG	2 cut(s)	193, 269
MspR9I	CCNGG	4 cut(s)	82, 105, 110, 645
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	4 cut(s)	82, 105, 110, 645
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	5 cut(s)	125, 511, 704, 869, 944
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	3 cut(s)	152, 471, 766
NlaIII	CATG	7 cut(s)	359, 641, 785, 820, 844, 851, 973
NlaIV	GGNNCC	2 cut(s)	768, 931
NsiI	ATGCAT	1 cut(s)	787
NspI	RCATGY	2 cut(s)	641, 851
PagI	TCATGA	1 cut(s)	816
PciI	ACATGT	1 cut(s)	637
PctI	GAATGC	1 cut(s)	865
PdmI	GAANNNNTTC	2 cut(s)	94, 433
PfeI	GAWTC	4 cut(s)	212, 257, 290, 573
PfoI	TCCNGGA	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	115, 118
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PscI	ACATGT	1 cut(s)	637
Psp6I	CCWGG	4 cut(s)	80, 103, 108, 643
PspFI	CCCAGC	1 cut(s)	943
PspGI	CCWGG	4 cut(s)	80, 103, 108, 643
PspN4I	GGNNCC	2 cut(s)	768, 931
PspPI	GGNCC	2 cut(s)	157, 647
PsuI	RGATCY	1 cut(s)	766
PvuII	CAGCTG	2 cut(s)	116, 584
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	732, 788, 977
SatI	GCNGC	2 cut(s)	114, 117
Sau3AI	GATC	3 cut(s)	152, 471, 766
Sau96I	GGNCC	2 cut(s)	157, 647
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	4 cut(s)	82, 105, 110, 645
SduI	GDGCHC	3 cut(s)	8, 742, 874
SfaNI	GCATC	5 cut(s)	501, 646, 657, 685, 714
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	157, 647
Sse9I	AATT	5 cut(s)	94, 219, 592, 729, 744
SsiI	CCGC	2 cut(s)	119, 173
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	4 cut(s)	80, 103, 108, 643
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	4 cut(s)	13, 565, 837, 902
TaqI	TCGA	2 cut(s)	296, 398
TasI	AATT	5 cut(s)	94, 219, 592, 729, 744
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	4 cut(s)	212, 257, 290, 573
Tru1I	TTAA	3 cut(s)	732, 788, 977
Tru9I	TTAA	3 cut(s)	732, 788, 977
TscAI	CASTG	2 cut(s)	447, 768
TseI	GCWGC	2 cut(s)	113, 116
TspDTI	ATGAA	4 cut(s)	321, 805, 807, 857
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	2 cut(s)	447, 768
VpaK11BI	GGWCC	2 cut(s)	157, 647
XapI	RAATTY	3 cut(s)	94, 219, 592
XbaI	TCTAGA	1 cut(s)	260
XceI	RCATGY	2 cut(s)	641, 851
XmnI	GAANNNNTTC	2 cut(s)	94, 433
XspI	CTAG	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.